Transcription factors with Perturb-seq knockdown data for NPM1P27. The Binding column indicates whether any binding evidence exists for this TF–gene pair (ChIP-seq or motif footprint peaks). The Mean coef is the average Perturb-seq regression coefficient across active gRNAs (positive = NPM1P27 upregulated upon KD; negative = downregulated). The Outlier column indicates whether this gene is in the top or bottom 5% of all TF knockdown effects.
| TF | Mean coef | Binding | Outlier | TF→Gene link |
|---|
Open chromatin peaks (ATAC-seq) in the genomic neighbourhood of NPM1P27, linked by TSS proximity or chromatin conformation (Multiome / HiCAR). Each element overlaps at least one TF ChIP-seq binding site — the TFs column shows how many distinct TFs bind that element.
| Accessibility | Element | Dist. to TSS | Link type | TFs |
|---|---|---|---|---|
| chr5:93,674,203–93,674,372 | 9.3 kb | Proximal (<10kb) | 78 | |
| chr5:93,677,273–93,677,961 | 5.7 kb | Proximal (<10kb) | 468 | |
| chr5:93,681,217–93,681,770 | 1.9 kb | Proximal (<10kb) | 63 |
Genomic view of the NPM1P27 locus showing ATAC-seq accessibility and RNA-seq expression across the ESC → DE time course, together with TF binding peaks and element-to-TSS loop connections.