chr5 : 75,055,671 – 75,056,095
424 bp 64 TFs 1 linked gene
This 424 bp open chromatin element is linked to GCNT4 and is bound by 64 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
GCNT4 3.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:75,050,671 – 75,061,095
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
64 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP 12Z GSE129781.ARID1A.12Z 165 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 424 bp overlap
ATF2 6 datasets
ChIP H1 ENCFF295GZO 310 bp overlap
ChIP HEK293 ENCFF194VKZ 129 bp overlap
ChIP HEK293 ENCSR217HTK.ATF2.HEK293 59 bp overlap
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 125 bp overlap
ChIP K-562 ENCSR869IUD.ATF2.K-562 61 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 178 bp overlap
ATF7 2 datasets
ChIP Hep-G2 ENCSR545FXC.ATF7.Hep-G2 63 bp overlap
ChIP MCF-7 ENCSR866QPZ.ATF7.MCF-7 103 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 424 bp overlap
BRD4 1 dataset
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 277 bp overlap
BRD9 1 dataset
ChIP G-401 GSE120234.BRD9.G-401 424 bp overlap
CEBPB 3 datasets
ChIP H1 ENCFF871PTR 261 bp overlap
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 283 bp overlap
ChIP WA01 ENCSR000EBV.CEBPB.WA01 232 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 187 bp overlap
CHD7 2 datasets
ChIP WA01 ENCSR000AVA.CHD7.WA01 220 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 345 bp overlap
CREB1 4 datasets
ChIP GM23338 ENCFF432ZEW 155 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 302 bp overlap
ChIP H1 ENCFF955PMP 299 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 284 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 257 bp overlap
CTCF 2 datasets
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
ChIP Panc1 ENCFF056JQX 117 bp overlap
CTCFL 1 dataset
Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 225 bp overlap
EP300 4 datasets
ChIP H1 ENCFF927IYK 247 bp overlap
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 169 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 385 bp overlap
ChIP WA01 ENCSR000AUQ.EP300.WA01 115 bp overlap
ESR1 1 dataset
ChIP Ishikawa ENCSR000BIY.ESR1.Ishikawa 167 bp overlap
ETS1 1 dataset
ChIP hESC ENCSR534VHI.ETS1.hESC 153 bp overlap
FEZF2 2 datasets
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Motif ES_0h ES_0h-FEZF2_MA2341.1 8 bp overlap
GATA2 2 datasets
ChIP ESF GSE108408.GATA2.ESF 310 bp overlap
ChIP primary-endometrial-stromal-cell_Veh_P1 GSE145673.GATA2.primary-endometrial-stromal-cell_Veh_P1 263 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-1 260 bp overlap
GATA6 6 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 311 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 253 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 272 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 281 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 273 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 345 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF939VKA 146 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 139 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 205 bp overlap
HOXB13 1 dataset
ChIP G-401 GSE65381.HOXB13.G-401 298 bp overlap
JUN 8 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 247 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 268 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 368 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 363 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 363 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 282 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 383 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 271 bp overlap
JUND 2 datasets
ChIP H1 ENCFF010YXS 253 bp overlap
ChIP WA01 ENCSR000EBZ.JUND.WA01 216 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 165 bp overlap
MAZ 1 dataset
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
MED1 7 datasets
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 245 bp overlap
ChIP hMSC-TERT4_D14 GSE104537.MED1.hMSC-TERT4_D14 240 bp overlap
ChIP hMSC-TERT4_adipocyte-D7 GSE113253.MED1.hMSC-TERT4_adipocyte-D7 214 bp overlap
ChIP hMSC-TERT4_osteoblast-4H GSE113253.MED1.hMSC-TERT4_osteoblast-4H 234 bp overlap
ChIP hMSC-TERT4_osteoblast-D1 GSE113253.MED1.hMSC-TERT4_osteoblast-D1 302 bp overlap
ChIP hMSC-TERT4_osteoblast-D3 GSE113253.MED1.hMSC-TERT4_osteoblast-D3 406 bp overlap
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 370 bp overlap
MEN1 1 dataset
ChIP ML-2 GSE95511.MEN1.ML-2 424 bp overlap
MYC 1 dataset
ChIP BJ GSE36570.MYC.BJ 118 bp overlap
NANOG 8 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 266 bp overlap
ChIP H1 ENCFF747ZPQ 230 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 424 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 315 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 280 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 293 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 385 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 387 bp overlap
NIPBL 3 datasets
ChIP hESC GSE64758.NIPBL.hESC 285 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 228 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 274 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
POLR2A 3 datasets
ChIP H1 ENCFF566JSR 198 bp overlap
ChIP H1 ENCFF770YBQ 344 bp overlap
ChIP H1 ENCFF770YBQ 339 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 414 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 210 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 227 bp overlap
RARA 1 dataset
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 235 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 244 bp overlap
RELA 3 datasets
ChIP Detroit-562_LPS GSE91018.RELA.Detroit-562_LPS 222 bp overlap
ChIP Detroit-562_TNFa GSE91018.RELA.Detroit-562_TNFa 298 bp overlap
ChIP Detroit-562_tri-DAP GSE91018.RELA.Detroit-562_tri-DAP 220 bp overlap
RNF2 1 dataset
ChIP fibroblast GSE139053.RNF2.fibroblast 184 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 199 bp overlap
SMAD2 1 dataset
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 280 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 333 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 284 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 331 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 274 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 316 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 357 bp overlap
SMARCA2 2 datasets
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 202 bp overlap
ChIP NPC_R1159Q GSE122631.SMARCA2.NPC_R1159Q 193 bp overlap
SMARCA4 6 datasets
ChIP G-401_NoDox GSE71504.SMARCA4.G-401_NoDox 175 bp overlap
ChIP NPC_K755R-pos GSE122631.SMARCA4.NPC_K755R-pos 207 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 324 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCA4.TTC-1240_delC 345 bp overlap
ChIP TTC-549_Dox GSE71504.SMARCA4.TTC-549_Dox 241 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 201 bp overlap
SMARCC1 4 datasets
ChIP G-401_Dox GSE71504.SMARCC1.G-401_Dox 319 bp overlap
ChIP G-401_NoDox GSE71504.SMARCC1.G-401_NoDox 179 bp overlap
ChIP TTC-1240_delC GSE124903.SMARCC1.TTC-1240_delC 234 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 175 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 230 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 338 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 257 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 368 bp overlap
SRF 4 datasets
ChIP H1 ENCFF036PEF 217 bp overlap
ChIP Ishikawa ENCFF992QXM 80 bp overlap
ChIP Ishikawa ENCSR000BTD.SRF.Ishikawa 140 bp overlap
ChIP WA01 ENCSR000BIV.SRF.WA01 292 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 179 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 424 bp overlap
TAF7 1 dataset
ChIP WA01 ENCSR000BLU.TAF7.WA01 132 bp overlap
TBP 6 datasets
ChIP H1 ENCFF859IIO 231 bp overlap
ChIP WA01 ENCSR000ECB.TBP.WA01 393 bp overlap
ChIP hESC GSE122298.TBP.hESC 373 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 119 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 138 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 424 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 223 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 337 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 130 bp overlap
TEAD1 5 datasets
ChIP HEK293_siE1A GSE130135.TEAD1.HEK293_siE1A 108 bp overlap
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 287 bp overlap
ChIP MSTO GSE68170.TEAD1.MSTO 194 bp overlap
ChIP WTC11 ENCFF502QUV 335 bp overlap
ChIP adipocyte GSE140782.TEAD1.adipocyte 289 bp overlap
TEAD4 11 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 350 bp overlap
ChIP H1 ENCFF778PAX 172 bp overlap
ChIP HUCCT1 GSE68296.TEAD4.HUCCT1 245 bp overlap
ChIP Ishikawa ENCFF772OTG 239 bp overlap
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 289 bp overlap
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 355 bp overlap
ChIP PC-9_2DF_DMSO GSE131687.TEAD4.PC-9_2DF_DMSO 351 bp overlap
ChIP SNU-216 GSE44416.TEAD4.SNU-216 293 bp overlap
ChIP WTC11 ENCFF114TZS 302 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 288 bp overlap
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 242 bp overlap
TRIM28 1 dataset
ChIP hESC GSE115387.TRIM28.hESC 206 bp overlap
YAP1 2 datasets
ChIP MCF-10A GSE97972.YAP1.MCF-10A 169 bp overlap
ChIP WA01 GSE99202.YAP1.WA01 298 bp overlap
YY1 2 datasets
ChIP H1 ENCFF524BTL 282 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 287 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 194 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 345 bp overlap
Zfp809 2 datasets
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap
Huangfu Lab · Publications · Resources · Contact