chr5 : 64,765,815 64,766,436
621 bp 84 TFs 2 linked genes
This 621 bp open chromatin element is linked to SREK1IP1 and CWC27 and is bound by 84 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
SREK1IP1 2.2 kb Proximal Proximity
CWC27 2.5 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:64,760,815 – 64,771,436
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
AR 15 datasets
ChIP LNCaP ERP003503.AR.LNCaP 137 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 157 bp overlap
ChIP LNCaP_DHTTHZ1 GSE125245.AR.LNCaP_DHTTHZ1 126 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 215 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 250 bp overlap
ChIP LNCaP_SHFOXA1_R1881 GSE37345.AR.LNCaP_SHFOXA1_R1881 156 bp overlap
ChIP LNCaP_SHFOXA1_RPMIFBS GSE69043.AR.LNCaP_SHFOXA1_RPMIFBS 140 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 132 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 138 bp overlap
ChIP LNCaP_androgen-Y_hypoxia-N GSE114732.AR.LNCaP_androgen-Y_hypoxia-N 141 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 176 bp overlap
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 220 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 232 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 153 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 92 bp overlap
ARID1A 1 dataset
ChIP RMG-I GSE120058.ARID1A.RMG-I 574 bp overlap
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 436 bp overlap
ATF3 6 datasets
ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 219 bp overlap
ChIP HCT-116_DMSO GSE74355.ATF3.HCT-116_DMSO 126 bp overlap
ChIP HCT116 ENCFF088WVX 310 bp overlap
ChIP K-562 ENCSR028UIU.ATF3.K-562 485 bp overlap
ChIP K562 ENCFF604FPV 218 bp overlap
ChIP K562 ENCFF921JQW 492 bp overlap
ATF4 2 datasets
ChIP HepG2 ENCFF903ADR 325 bp overlap
ChIP K-562 ENCSR145TSJ.ATF4.K-562 298 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 213 bp overlap
BCL11A 2 datasets
ChIP HUDEP-2_30min GSE104676.BCL11A.HUDEP-2_30min 111 bp overlap
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 68 bp overlap
BRD4 2 datasets
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801 264 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801_rDNA 264 bp overlap
BRD9 1 dataset
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD9.MDA-MB-231_JQ1_MGSK2801 163 bp overlap
CEBPA 1 dataset
ChIP HepG2 ENCFF175DFS 280 bp overlap
CEBPB 10 datasets
ChIP HCT-116 ENCSR000BSD.CEBPB.HCT-116 221 bp overlap
ChIP HCT116 ENCFF097OLY 340 bp overlap
ChIP HeLa-S3 ENCFF722WEG 265 bp overlap
ChIP Hep-G2 ENCSR000EEX.CEBPB.Hep-G2 131 bp overlap
ChIP HepG2 ENCFF536NTI 221 bp overlap
ChIP IMR-90 ENCFF468UGY 251 bp overlap
ChIP K-562 ENCSR000EHE.CEBPB.K-562 167 bp overlap
ChIP K-562 ENCSR000BRQ.CEBPB.K-562 116 bp overlap
ChIP MCF-7 ENCFF772ZTQ 277 bp overlap
ChIP MCF-7 ENCSR000BSR.CEBPB.MCF-7 197 bp overlap
CEBPD 1 dataset
ChIP HepG2 ENCFF345JDB 285 bp overlap
CEBPG 1 dataset
ChIP K-562 ENCSR620VIC.CEBPG.K-562 195 bp overlap
CREB1 1 dataset
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 210 bp overlap
CREBBP 2 datasets
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 581 bp overlap
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 415 bp overlap
DAXX 2 datasets
ChIP PC-3 GSE68647.DAXX.PC-3 295 bp overlap
ChIP PC-3_DAXX GSE68647.DAXX.PC-3_DAXX 224 bp overlap
DNMT3B 1 dataset
ChIP HUES-8_TripleKO-TET1-2-3 GSE99346.DNMT3B.HUES-8_TripleKO-TET1-2-3 249 bp overlap
E2F7 2 datasets
ChIP IMR-90_SENES_SHCTR GSE40343.E2F7.IMR-90_SENES_SHCTR 176 bp overlap
ChIP IMR-90_SENES_SHRB GSE40343.E2F7.IMR-90_SENES_SHRB 142 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 141 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 357 bp overlap
ELF3 2 datasets
ChIP PDAC GSE64557.ELF3.PDAC 305 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 350 bp overlap
EP300 1 dataset
ChIP Hep-G2 ENCSR000BLW.EP300.Hep-G2 143 bp overlap
EPAS1 1 dataset
ChIP PC-3_hypoxia GSE106305.EPAS1.PC-3_hypoxia 198 bp overlap
ERG 2 datasets
ChIP RWPE-1 GSE114241.ERG.RWPE-1 345 bp overlap
ChIP RWPE-1 GSE37752.ERG.RWPE-1 215 bp overlap
ESR1 2 datasets
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 118 bp overlap
ChIP MCF-7_SIGATA_E2 GSE40129.ESR1.MCF-7_SIGATA_E2 121 bp overlap
EZH2 1 dataset
ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 138 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 185 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 401 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 240 bp overlap
FOS 4 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 351 bp overlap
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 118 bp overlap
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 152 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 277 bp overlap
FOSL2 1 dataset
ChIP HepG2 ENCFF548CXY 94 bp overlap
FOXA1 15 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 461 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 399 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 417 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 132 bp overlap
ChIP LNCaP_SHGATA2_R1881 GSE69043.FOXA1.LNCaP_SHGATA2_R1881 105 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 144 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 126 bp overlap
ChIP MCF-7_E2 GSE23852.FOXA1.MCF-7_E2 121 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 184 bp overlap
ChIP MCF-7_TamR GSE128445.FOXA1.MCF-7_TamR 259 bp overlap
ChIP MCF-7_estrogen_ab1 GSE112969.FOXA1.MCF-7_estrogen_ab1 234 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 269 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 546 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 408 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 577 bp overlap
FOXA2 13 datasets
ChIP BJ1-hTERT GSE90454.FOXA2.BJ1-hTERT 305 bp overlap
ChIP BJ1-hTERT_Mimo GSE92491.FOXA2.BJ1-hTERT_Mimo 291 bp overlap
ChIP BJ1-hTERT_MimosinePlus GSE90454.FOXA2.BJ1-hTERT_MimosinePlus 296 bp overlap
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 406 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 518 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 347 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 488 bp overlap
ChIP Caco-2 GSE66218.FOXA2.Caco-2 119 bp overlap
ChIP DE DE-FOXA2-1 580 bp overlap
ChIP DE DE-FOXA2-2 557 bp overlap
ChIP HepG2 ENCFF570ABM 176 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 442 bp overlap
ChIP liver ENCSR080XEY.FOXA2.liver 195 bp overlap
FOXP1 1 dataset
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 128 bp overlap
GABPB1 1 dataset
ChIP WTC11 ENCFF166QKI 279 bp overlap
GATA1 1 dataset
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 55 bp overlap
GATA2 1 dataset
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 158 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 290 bp overlap
ChIP DE DE-GATA4-2 610 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 257 bp overlap
GATA6 2 datasets
ChIP DE DE-GATA6-1 343 bp overlap
ChIP DE DE-GATA6-2 428 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR563YDA.HDGF.K-562 429 bp overlap
HIF1A 1 dataset
ChIP PC-3_hypoxia_siCtrl GSE106305.HIF1A.PC-3_hypoxia_siCtrl 222 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 512 bp overlap
HNF4A 2 datasets
ChIP IM95 GSE114018.HNF4A.IM95 195 bp overlap
ChIP IM95 GSE114018.HNF4A.IM95 186 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 466 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 621 bp overlap
JUN 1 dataset
ChIP MCF-7_TamR GSE128445.JUN.MCF-7_TamR 406 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 565 bp overlap
JUND 1 dataset
ChIP HT29_DSMO GSE77039.JUND.HT29_DSMO 280 bp overlap
KLF1 3 datasets
ChIP HEK293 ENCFF159QSW 148 bp overlap
ChIP HEK293 ENCFF159QSW 149 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 313 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 372 bp overlap
KLF4 3 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 389 bp overlap
ChIP PDAC GSE64557.KLF4.PDAC 615 bp overlap
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 426 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 621 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 295 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 334 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 338 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 180 bp overlap
NR1H2 2 datasets
ChIP HT29_GW3965_2H GSE77039.NR1H2.HT29_GW3965_2H 256 bp overlap
ChIP HT29_GW3965_48H GSE77039.NR1H2.HT29_GW3965_48H 541 bp overlap
NR3C1 1 dataset
ChIP LNCaP_1F5_SIFOXA1 GSE30623.NR3C1.LNCaP_1F5_SIFOXA1 114 bp overlap
POLR2A 1 dataset
ChIP transverse colon ENCFF610RWV 328 bp overlap
POU5F1 2 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 218 bp overlap
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 184 bp overlap
PPARG 2 datasets
ChIP HT29_ROSIG_2H GSE77039.PPARG.HT29_ROSIG_2H 303 bp overlap
ChIP HT29_ROSIG_48H GSE77039.PPARG.HT29_ROSIG_48H 582 bp overlap
PRDM10 2 datasets
ChIP Hep-G2 ENCSR289PSX.PRDM10.Hep-G2 166 bp overlap
ChIP Hep-G2 ENCSR289PSX.PRDM10.Hep-G2 184 bp overlap
PROX1 2 datasets
ChIP SW480 GSE60390.PROX1.SW480 163 bp overlap
ChIP SW480 GSE60390.PROX1.SW480 109 bp overlap
RBFOX2 2 datasets
ChIP K562 ENCFF196WTG 177 bp overlap
ChIP K562 ENCFF967GRF 177 bp overlap
RBPJ 2 datasets
ChIP SCC_0h GSE156486.RBPJ.SCC_0h 331 bp overlap
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 349 bp overlap
RELA 1 dataset
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 277 bp overlap
RUNX1 1 dataset
ChIP MCF-10A GSE129314.RUNX1.MCF-10A 209 bp overlap
SCRT2 2 datasets
ChIP HEK293 ENCFF711QQB 330 bp overlap
ChIP HEK293 ENCFF711QQB 521 bp overlap
SMAD3 6 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 264 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 475 bp overlap
ChIP HMLE_Doxycicline_TGFb GSE104760.SMAD3.HMLE_Doxycicline_TGFb 312 bp overlap
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 475 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 519 bp overlap
ChIP PC-3_hypoxia GSE106305.SMAD3.PC-3_hypoxia 309 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 419 bp overlap
SMARCA4 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 543 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 508 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 366 bp overlap
SMARCC1 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 336 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-K785R 197 bp overlap
SP1 2 datasets
ChIP HCT-116 ENCSR000BSF.SP1.HCT-116 128 bp overlap
ChIP HCT116 ENCFF800LBN 346 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 370 bp overlap
SPI1 9 datasets
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 135 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 127 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 190 bp overlap
ChIP GM12878 ENCFF134LCP 205 bp overlap
ChIP GM12891 ENCFF563IUT 192 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 164 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 173 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 164 bp overlap
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 130 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 474 bp overlap
STAT3 3 datasets
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 219 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 235 bp overlap
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 201 bp overlap
TEAD1 1 dataset
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 493 bp overlap
ZEB1 1 dataset
ChIP PDAC GSE64557.ZEB1.PDAC 307 bp overlap
ZEB2 2 datasets
ChIP K-562 ENCSR322CFO.ZEB2.K-562 205 bp overlap
ChIP K-562 ENCSR004GKA.ZEB2.K-562 199 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 148 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 181 bp overlap