chr5 : 55,497,392 55,498,099
707 bp 88 TFs 5 linked genes
This 707 bp open chromatin element is linked to 5 target genes and is bound by 88 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
PLPP1 37.2 kb Distal Multiome
MTREX 189.8 kb Distal Multiome
DHX29 190.1 kb Distal Multiome
SLC38A9 214.6 kb Distal Multiome
CCNO-DT 263.8 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:55,492,392 – 55,503,099
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP GSE80256.AR.LNCaP 329 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 185 bp overlap
ATF2 3 datasets
Motif DE_36h DE_36h-ATF2_MA1632.2 10 bp overlap
Motif DE_60h DE_60h-ATF2_MA1632.2 10 bp overlap
Motif DE_72h DE_72h-ATF2_MA1632.2 10 bp overlap
BACH2 3 datasets
Motif DE_36h DE_36h-BACH2_MA1470.2 19 bp overlap
Motif DE_60h DE_60h-BACH2_MA1470.2 19 bp overlap
Motif DE_72h DE_72h-BACH2_MA1470.2 19 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 173 bp overlap
BRD4 3 datasets
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 227 bp overlap
ChIP LNCaP-C4-2_F133V GSE88871.BRD4.LNCaP-C4-2_F133V 397 bp overlap
ChIP LNCaP-C4-2_OE GSE88871.BRD4.LNCaP-C4-2_OE 291 bp overlap
BRF1 1 dataset
ChIP H9 GSE94418.BRF1.H9 136 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 230 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 179 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 415 bp overlap
E2F1 1 dataset
ChIP HeLa-S3 ENCSR000EVM.E2F1.HeLa-S3 125 bp overlap
EOMES 3 datasets
Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap
Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 309 bp overlap
ERF::NHLH1 4 datasets
Motif DE_36h DE_36h-ERFNHLH1_MA1938.2 16 bp overlap
Motif DE_48h DE_48h-ERFNHLH1_MA1938.2 16 bp overlap
Motif DE_60h DE_60h-ERFNHLH1_MA1938.2 16 bp overlap
Motif DE_72h DE_72h-ERFNHLH1_MA1938.2 16 bp overlap
ESR1 22 datasets
ChIP MCF-7 GSE48930.ESR1.MCF-7 224 bp overlap
ChIP MCF-7 GSE76893.ESR1.MCF-7 230 bp overlap
ChIP MCF-7 GSE95302.ESR1.MCF-7 193 bp overlap
ChIP MCF-7_E2 ERP000209.ESR1.MCF-7_E2 173 bp overlap
ChIP MCF-7_E2-20min-ERalpha GSE94023.ESR1.MCF-7_E2-20min-ERalpha 155 bp overlap
ChIP MCF-7_E2-5min-ERalpha GSE94023.ESR1.MCF-7_E2-5min-ERalpha 203 bp overlap
ChIP MCF-7_E2_90min GSE109820.ESR1.MCF-7_E2_90min 199 bp overlap
ChIP MCF-7_E2_talen GSE94493.ESR1.MCF-7_E2_talen 139 bp overlap
ChIP MCF-7_HC11 GSE102882.ESR1.MCF-7_HC11 216 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 271 bp overlap
ChIP MCF-7_SHCRT_E2 ERP000380.ESR1.MCF-7_SHCRT_E2 171 bp overlap
ChIP MCF-7_SICTR_E2 GSE40129.ESR1.MCF-7_SICTR_E2 185 bp overlap
ChIP MCF-7_SIGATA_E2 GSE40129.ESR1.MCF-7_SIGATA_E2 167 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 228 bp overlap
ChIP MCF-7_estradiol-Dex_4h GSE99626.ESR1.MCF-7_estradiol-Dex_4h 227 bp overlap
ChIP MCF-7_jc5849 GSE126004.ESR1.MCF-7_jc5849 298 bp overlap
ChIP MCF-7_parental GSE123284.ESR1.MCF-7_parental 244 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 295 bp overlap
ChIP T-47D GSE148277.ESR1.T-47D 292 bp overlap
ChIP T-47D_D538G_E2 GSE148277.ESR1.T-47D_D538G_E2 283 bp overlap
ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 339 bp overlap
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 244 bp overlap
ESR1_Y537N 2 datasets
ChIP MCF-7_dox GSE94493.ESR1_Y537N.MCF-7_dox 271 bp overlap
ChIP MCF-7_dox_E2 GSE94493.ESR1_Y537N.MCF-7_dox_E2 173 bp overlap
ESR1_Y537S 2 datasets
ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 182 bp overlap
ChIP MCF-7_dox GSE94493.ESR1_Y537S.MCF-7_dox 250 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 268 bp overlap
FOXA1 8 datasets
ChIP A1A3_Brg1KD_Dex GSE112491.FOXA1.A1A3_Brg1KD_Dex 272 bp overlap
ChIP LNCaP_S2101-4H GSE114266.FOXA1.LNCaP_S2101-4H 226 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 129 bp overlap
ChIP MCF-7_JC4692 GSE126004.FOXA1.MCF-7_JC4692 181 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 149 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 120 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 118 bp overlap
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 283 bp overlap
FOXA2 4 datasets
ChIP DE DE-FOXA2-1 667 bp overlap
ChIP DE DE-FOXA2-2 676 bp overlap
Motif DE_48h DE_48h-FOXA2_MA0047.4 8 bp overlap
Motif DE_60h DE_60h-FOXA2_MA0047.4 8 bp overlap
FOXA3 2 datasets
Motif DE_48h DE_48h-FOXA3_MA1683.2 7 bp overlap
Motif DE_60h DE_60h-FOXA3_MA1683.2 7 bp overlap
FOXI1 2 datasets
Motif DE_48h DE_48h-FOXI1_MA0042.2 7 bp overlap
Motif DE_60h DE_60h-FOXI1_MA0042.2 7 bp overlap
FOXP1 2 datasets
Motif DE_48h DE_48h-FOXP1_MA0481.4 7 bp overlap
Motif DE_60h DE_60h-FOXP1_MA0481.4 7 bp overlap
FOXP4 2 datasets
Motif DE_48h DE_48h-FOXP4_MA2117.1 7 bp overlap
Motif DE_60h DE_60h-FOXP4_MA2117.1 7 bp overlap
FOXS1 2 datasets
Motif DE_48h DE_48h-FOXS1_MA2118.1 8 bp overlap
Motif DE_60h DE_60h-FOXS1_MA2118.1 8 bp overlap
GATA2 1 dataset
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 416 bp overlap
GATA4 5 datasets
ChIP BJ1-hTERT_FOXA2_GATA4_Coexp GSE92491.GATA4.BJ1-hTERT_FOXA2_GATA4_Coexp 175 bp overlap
ChIP DE DE-GATA4-1 643 bp overlap
ChIP DE DE-GATA4-2 670 bp overlap
ChIP cardiomyocyte_7 GSE85628.GATA4.cardiomyocyte_7 148 bp overlap
ChIP foregut GSE117136.GATA4.foregut 261 bp overlap
GATA6 12 datasets
ChIP DE DE-GATA6-1 593 bp overlap
ChIP DE DE-GATA6-2 687 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 593 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 586 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 592 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 600 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 707 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 598 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 559 bp overlap
ChIP foregut GSE117136.GATA6.foregut 310 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 489 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 246 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 205 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 204 bp overlap
HIC2 3 datasets
Motif DE_36h DE_36h-HIC2_MA0738.2 6 bp overlap
Motif DE_60h DE_60h-HIC2_MA0738.2 6 bp overlap
Motif DE_72h DE_72h-HIC2_MA0738.2 6 bp overlap
HNF4A 1 dataset
ChIP liver ENCFF449HPV 116 bp overlap
HOXC13 2 datasets
Motif DE_48h DE_48h-HOXC13_MA0907.2 9 bp overlap
Motif DE_60h DE_60h-HOXC13_MA0907.2 9 bp overlap
JUN 5 datasets
Motif DE_36h DE_36h-JUN_MA0488.2 10 bp overlap
Motif DE_60h DE_60h-JUN_MA0488.2 10 bp overlap
Motif DE_72h DE_72h-JUN_MA0488.2 10 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 368 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 263 bp overlap
JUND 3 datasets
Motif DE_36h DE_36h-JUND_MA0492.2 11 bp overlap
Motif DE_60h DE_60h-JUND_MA0492.2 11 bp overlap
Motif DE_72h DE_72h-JUND_MA0492.2 11 bp overlap
KLF6 1 dataset
Motif DE_60h DE_60h-KLF6_MA1517.2 9 bp overlap
KLF9 1 dataset
Motif DE_60h DE_60h-KLF9_MA1107.3 11 bp overlap
MEIS1 3 datasets
Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MGA 2 datasets
Motif DE_48h DE_48h-MGA_MA0801.1 8 bp overlap
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
MITF 1 dataset
ChIP melanocyte_BRAFV600E GSE50681.MITF.melanocyte_BRAFV600E 210 bp overlap
NANOG 3 datasets
ChIP WA01 ENCSR000BMT.NANOG.WA01 119 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 613 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 189 bp overlap
NEUROD1 1 dataset
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 230 bp overlap
NFATC3 3 datasets
Motif DE_36h DE_36h-NFATC3_MA0625.3 6 bp overlap
Motif DE_48h DE_48h-NFATC3_MA0625.3 6 bp overlap
Motif DE_72h DE_72h-NFATC3_MA0625.3 6 bp overlap
Nfatc1 3 datasets
Motif DE_36h DE_36h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_48h DE_48h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_72h DE_72h-Nfatc1_MA0624.3 6 bp overlap
POU5F1 1 dataset
ChIP hiPSC GSE56567.POU5F1.hiPSC 153 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 221 bp overlap
Prdm15 1 dataset
Motif DE_36h DE_36h-Prdm15_MA1616.2 11 bp overlap
RAD21 1 dataset
ChIP IMR-5 GSE78957.RAD21.IMR-5 165 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 681 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 314 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 349 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 457 bp overlap
SMARCA4 3 datasets
ChIP NGP GSE134626.SMARCA4.NGP 194 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 280 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 308 bp overlap
SMARCC1 1 dataset
ChIP DE_D1 S15-DE-d1-BAF155-exp1 365 bp overlap
SNAI2 2 datasets
ChIP SMS-CTR_D48 GSE137168.SNAI2.SMS-CTR_D48 261 bp overlap
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 428 bp overlap
SOX10 2 datasets
Motif DE_36h DE_36h-SOX10_MA0442.3 6 bp overlap
Motif DE_72h DE_72h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 463 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 517 bp overlap
SOX4 2 datasets
Motif DE_36h DE_36h-SOX4_MA0867.3 8 bp overlap
Motif DE_72h DE_72h-SOX4_MA0867.3 8 bp overlap
SOX8 1 dataset
ChIP RH4_Entinostat-6H GSE116344.SOX8.RH4_Entinostat-6H 270 bp overlap
SPI1 1 dataset
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 186 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3_SHSPIB GSE56857.SPIB.OCI-Ly3_SHSPIB 192 bp overlap
STAT3 1 dataset
ChIP SU-DHL-10 GSE50723.STAT3.SU-DHL-10 189 bp overlap
Sox6 2 datasets
Motif DE_36h DE_36h-Sox6_MA0515.1 10 bp overlap
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
TBR1 2 datasets
Motif DE_48h DE_48h-TBR1_MA0802.2 9 bp overlap
Motif DE_60h DE_60h-TBR1_MA0802.2 9 bp overlap
TBX1 2 datasets
Motif DE_48h DE_48h-TBX1_MA0805.1 8 bp overlap
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
TBX15 2 datasets
Motif DE_48h DE_48h-TBX15_MA0803.1 8 bp overlap
Motif DE_60h DE_60h-TBX15_MA0803.1 8 bp overlap
TBX18 2 datasets
Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
TBX2 2 datasets
Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap
Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap
TBX20 2 datasets
Motif DE_48h DE_48h-TBX20_MA0689.1 11 bp overlap
Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap
TBX21 2 datasets
Motif DE_48h DE_48h-TBX21_MA0690.3 10 bp overlap
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
TBX3 2 datasets
Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap
Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap
TBX4 2 datasets
Motif DE_48h DE_48h-TBX4_MA0806.1 8 bp overlap
Motif DE_60h DE_60h-TBX4_MA0806.1 8 bp overlap
TBX5 2 datasets
Motif DE_48h DE_48h-TBX5_MA0807.1 8 bp overlap
Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap
Tbx6 2 datasets
Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 215 bp overlap
ZNF354A 2 datasets
Motif DE_48h DE_48h-ZNF354A_MA1978.2 20 bp overlap
Motif DE_60h DE_60h-ZNF354A_MA1978.2 20 bp overlap
ZNF449 1 dataset
ChIP HEK293 GSE76494.ZNF449.HEK293 123 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 339 bp overlap
ZNF554 1 dataset
ChIP HEK293 GSE76494.ZNF554.HEK293 161 bp overlap
ZNF76 3 datasets
Motif DE_36h DE_36h-ZNF76_MA1716.2 17 bp overlap
Motif DE_60h DE_60h-ZNF76_MA1716.2 17 bp overlap
Motif DE_72h DE_72h-ZNF76_MA1716.2 17 bp overlap
ZNF766 1 dataset
Motif DE_36h DE_36h-ZNF766_MA2098.1 9 bp overlap
ZNF770 3 datasets
ChIP HEK293 ENCFF468FCG 226 bp overlap
ChIP HEK293 ENCSR242BGR.ZNF770.HEK293 252 bp overlap
ChIP Hep-G2 ENCSR510GKB.ZNF770.Hep-G2 96 bp overlap
ZNF90 1 dataset
ChIP HEK293T GSE78099.ZNF90.HEK293T 190 bp overlap
ZSCAN4 2 datasets
Motif DE_48h DE_48h-ZSCAN4_MA1155.1 15 bp overlap
Motif DE_60h DE_60h-ZSCAN4_MA1155.1 15 bp overlap