chr5 : 51,392,697 51,393,166
469 bp 72 TFs 2 linked genes
This 469 bp open chromatin element is linked to ISL1 and ISL1-DT and is bound by 72 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
ISL1 9.2 kb Proximal Proximity
ISL1-DT 9.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:51,387,697 – 51,398,166
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
72 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 108 bp overlap
ATF2 9 datasets
ChIP GM12878 ENCFF066HPG 133 bp overlap
ChIP GM12878 ENCSR961PPA.ATF2.GM12878 403 bp overlap
ChIP HEK293 ENCFF194VKZ 385 bp overlap
ChIP HEK293 ENCSR217HTK.ATF2.HEK293 355 bp overlap
ChIP Hep-G2 ENCSR047BUZ.ATF2.Hep-G2 428 bp overlap
ChIP HepG2 ENCFF955VER 359 bp overlap
ChIP K-562 ENCSR869IUD.ATF2.K-562 358 bp overlap
ChIP K562 ENCFF139ZZG 261 bp overlap
ChIP WA01 ENCSR000BQU.ATF2.WA01 329 bp overlap
ATF3 1 dataset
ChIP K-562 ENCSR028UIU.ATF3.K-562 278 bp overlap
ATF7 6 datasets
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 346 bp overlap
ChIP Hep-G2 ENCSR545FXC.ATF7.Hep-G2 391 bp overlap
ChIP HepG2 ENCFF470FKK 323 bp overlap
ChIP K-562 ENCSR972ZBV.ATF7.K-562 346 bp overlap
ChIP MCF-7 ENCFF578WKB 263 bp overlap
ChIP MCF-7 ENCSR866QPZ.ATF7.MCF-7 412 bp overlap
BCOR 4 datasets
ChIP WA01 GSE104690.BCOR.WA01 292 bp overlap
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 398 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 203 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 280 bp overlap
BRD4 1 dataset
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 227 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 199 bp overlap
CREB1 2 datasets
ChIP MCF-7 ENCSR620DUQ.CREB1.MCF-7 235 bp overlap
ChIP MCF-7 ENCSR897JAS.CREB1.MCF-7 246 bp overlap
CREB5 2 datasets
ChIP SK-N-SH ENCFF144PMI 294 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 330 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 242 bp overlap
CTCF 1 dataset
ChIP islet ERP004003.CTCF.islet 134 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF896HSY 368 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 189 bp overlap
EZH2 2 datasets
ChIP GM23338 ENCFF613YON 143 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 304 bp overlap
Elf5 1 dataset
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 399 bp overlap
ChIP DE DE-FOXA2-2 388 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 190 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 365 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 369 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-2 418 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 271 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 278 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 329 bp overlap
GRHL2 1 dataset
Motif DE_12h DE_12h-GRHL2_MA1105.3 8 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 139 bp overlap
HIC2 1 dataset
Motif DE_12h DE_12h-HIC2_MA0738.2 6 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
ISL1 1 dataset
ChIP SK-N-SH ENCFF285GEQ 467 bp overlap
JUN 9 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 434 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 457 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 457 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 452 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 468 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 469 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 465 bp overlap
ChIP Hep-G2 ENCSR000EEK.JUN.Hep-G2 154 bp overlap
ChIP HepG2 ENCFF401CRH 285 bp overlap
JUND 6 datasets
ChIP HepG2 ENCFF869OPW 271 bp overlap
ChIP SK-N-SH ENCFF551NEQ 120 bp overlap
ChIP SK-N-SH ENCFF551NEQ 321 bp overlap
ChIP SK-N-SH ENCFF971JKN 291 bp overlap
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 141 bp overlap
ChIP SK-N-SH ENCSR000EIB.JUND.SK-N-SH 142 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 93 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
MEIS2 1 dataset
Motif DE_12h DE_12h-MEIS2_MA0774.1 8 bp overlap
MEIS3 1 dataset
Motif DE_12h DE_12h-MEIS3_MA0775.2 7 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 280 bp overlap
MYB 1 dataset
Motif DE_12h DE_12h-MYB_MA0100.4 6 bp overlap
NANOG 9 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 469 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 325 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 232 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 469 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 263 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 365 bp overlap
ChIP hESC GSE20650.NANOG.hESC 170 bp overlap
ChIP hESC GSE18292.NANOG.hESC 113 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NFATC4 1 dataset
Motif DE_12h DE_12h-NFATC4_MA1525.3 9 bp overlap
NKX2-5 2 datasets
ChIP hESC_ab3584 GSE89457.NKX2-5.hESC_ab3584 223 bp overlap
ChIP hESC_sc-14033 GSE89457.NKX2-5.hESC_sc-14033 175 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 285 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 247 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 284 bp overlap
POU5F1 3 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 469 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 186 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 399 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 189 bp overlap
Prdm14 1 dataset
Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap
Prdm4 1 dataset
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 84 bp overlap
REL 1 dataset
Motif DE_12h DE_12h-REL_MA0101.1 10 bp overlap
RELA 1 dataset
Motif DE_12h DE_12h-RELA_MA0107.1 10 bp overlap
REST 1 dataset
Motif DE_12h DE_12h-REST_MA0138.3 20 bp overlap
RNF2 2 datasets
ChIP H1 ENCFF239FFS 469 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 469 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 380 bp overlap
SCRT2 1 dataset
Motif DE_12h DE_12h-SCRT2_MA0744.3 10 bp overlap
SIN3A 3 datasets
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 171 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 167 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 113 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 250 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 329 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 357 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 209 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 223 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 469 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 365 bp overlap
THAP1 1 dataset
Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 189 bp overlap
ZNF652 1 dataset
Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap
ZNF667 1 dataset
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
ZNF680 1 dataset
Motif DE_12h DE_12h-ZNF680_MA1729.2 11 bp overlap
ZNF75A 1 dataset
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap
Zic1::Zic2 2 datasets
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 1 dataset
Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap
Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap