chr5 : 13,326,233 13,326,731
498 bp 105 TFs 0 linked genes
This 498 bp open chromatin element has no linked target genes and is bound by 105 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:13,321,233 – 13,331,731
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
105 transcription factors
Source
Cell type
ARNTL 1 dataset
ChIP U2OS_trough_DMOG GSE85096.ARNTL.U2OS_trough_DMOG 262 bp overlap
Arid3a 1 dataset
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 266 bp overlap
BRD4 4 datasets
ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 190 bp overlap
ChIP HeLa GSE51633.BRD4.HeLa 180 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 77 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 197 bp overlap
CDX2 1 dataset
ChIP LS180_125 GSE31939.CDX2.LS180_125 117 bp overlap
CDX4 1 dataset
Motif DE_12h DE_12h-CDX4_MA1473.2 9 bp overlap
CTCF 50 datasets
ChIP 22Rv1 ENCFF466OXN 498 bp overlap
ChIP 22Rv1 ENCFF466OXN 466 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 341 bp overlap
Motif DE_12h DE_12h-CTCF_MA0139.2 15 bp overlap
Motif DE_12h DE_12h-CTCF_MA1930.2 33 bp overlap
ChIP GM23338 ENCFF531QOI 425 bp overlap
ChIP GM23338 ENCFF772DML 201 bp overlap
ChIP GP5D GSE51234.CTCF.GP5D 237 bp overlap
ChIP HAP1_clone21_CTCF-TSS-CRISPR_2 GSE152721.CTCF.HAP1_clone21_CTCF-TSS-CRISPR_2 210 bp overlap
ChIP HEC-1-B_WT GSE140868.CTCF.HEC-1-B_WT 109 bp overlap
ChIP HeLa GSE126990.CTCF.HeLa 297 bp overlap
ChIP HeLa-Kyoto GSE138405.CTCF.HeLa-Kyoto 297 bp overlap
ChIP HeLa-Kyoto GSE102884.CTCF.HeLa-Kyoto 188 bp overlap
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.CTCF.HeLa-Kyoto_PDS5-depleted 233 bp overlap
ChIP HeLa-Kyoto_WAPL-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL-depleted 315 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.CTCF.HeLa-Kyoto_WAPL_PDS-depleted 286 bp overlap
ChIP HeLa-S3 ENCFF565UFR 161 bp overlap
ChIP HeLa-S3 ENCSR000DUB.CTCF.HeLa-S3 110 bp overlap
ChIP HeLa_dC9Sun-D3A_CDCC85C GSE107607.CTCF.HeLa_dC9Sun-D3A_CDCC85C 156 bp overlap
ChIP HeLa_dC9Sun-D3A_MIR152 GSE107607.CTCF.HeLa_dC9Sun-D3A_MIR152 118 bp overlap
ChIP HeLa_dC9Sun-D3A_SHB GSE107607.CTCF.HeLa_dC9Sun-D3A_SHB 147 bp overlap
ChIP K-562_7140 GSE131349.CTCF.K-562_7140 109 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 430 bp overlap
ChIP MCF-7 ENCFF139NQI 277 bp overlap
ChIP MCF-7 ENCFF162GNE 245 bp overlap
ChIP MCF-7 ENCFF198DQX 231 bp overlap
ChIP MCF-7 ENCFF494VXA 231 bp overlap
ChIP MCF-7 ENCSR560BUE.CTCF.MCF-7 256 bp overlap
ChIP MCF-7 ENCSR000AHD.CTCF.MCF-7 157 bp overlap
ChIP MCF-7 ENCSR000DMR.CTCF.MCF-7 169 bp overlap
ChIP MCF-7 ENCSR000DWH.CTCF.MCF-7 139 bp overlap
ChIP MCF-7 ENCSR000DMS.CTCF.MCF-7 119 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 206 bp overlap
ChIP MCF-7_NORMOXIA GSE78113.CTCF.MCF-7_NORMOXIA 231 bp overlap
ChIP OVCAR-8 GSE70764.CTCF.OVCAR-8 209 bp overlap
ChIP Peyer's patch ENCFF746TCR 357 bp overlap
ChIP Peyers-patch ENCSR375VXU.CTCF.Peyers-patch 169 bp overlap
ChIP SK-MEL-147 GSE94488.CTCF.SK-MEL-147 102 bp overlap
ChIP WA01_NEUR GSE52457.CTCF.WA01_NEUR 139 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 231 bp overlap
ChIP endodermal cell ENCFF471YCZ 443 bp overlap
ChIP endothelial cell of umbilical vein ENCFF455OQM 197 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 293 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 262 bp overlap
ChIP islet ERP004003.CTCF.islet 337 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 190 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 229 bp overlap
ChIP neural progenitor cell ENCFF420RBO 411 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 202 bp overlap
ChIP progenitor cell of endocrine pancreas ENCFF492KHV 437 bp overlap
CTCFL 1 dataset
Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 498 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF798NMV 90 bp overlap
DUX4 5 datasets
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
Motif DE_12h DE_12h-DUX4_MA0468.1 11 bp overlap
ChIP HEK293 GSE75791.DUX4.HEK293 238 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 362 bp overlap
Dux 1 dataset
Motif DE_12h DE_12h-Dux_MA0611.3 11 bp overlap
ERG 1 dataset
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 297 bp overlap
ESR1 9 datasets
ChIP MCF-7 GSE119057.ESR1.MCF-7 269 bp overlap
ChIP MCF-7_ER_t10 GSE119057.ESR1.MCF-7_ER_t10 284 bp overlap
ChIP MCF-7_ER_t20 GSE119057.ESR1.MCF-7_ER_t20 234 bp overlap
ChIP MCF-7_ER_t30 GSE119057.ESR1.MCF-7_ER_t30 214 bp overlap
ChIP MCF-7_ER_t40 GSE119057.ESR1.MCF-7_ER_t40 218 bp overlap
ChIP MCF-7_ER_t50 GSE119057.ESR1.MCF-7_ER_t50 208 bp overlap
ChIP MCF-7_ER_t70 GSE119057.ESR1.MCF-7_ER_t70 213 bp overlap
ChIP MCF-7_ER_t80 GSE119057.ESR1.MCF-7_ER_t80 227 bp overlap
ChIP MCF-7_ER_t90 GSE119057.ESR1.MCF-7_ER_t90 275 bp overlap
Foxq1 1 dataset
Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap
GABPA 1 dataset
ChIP VCaP GSE49091.GABPA.VCaP 157 bp overlap
GATA6 4 datasets
ChIP DE_D1 S14-DE-d1-GATA6-exp1 282 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 380 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 380 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 331 bp overlap
HAND2 1 dataset
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
HIF1A 1 dataset
ChIP U2OS_DMOG GSE85096.HIF1A.U2OS_DMOG 116 bp overlap
HNF1A 1 dataset
Motif DE_12h DE_12h-HNF1A_MA0046.3 13 bp overlap
HNF1B 1 dataset
Motif DE_12h DE_12h-HNF1B_MA0153.2 13 bp overlap
HOXB4 1 dataset
Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap
HOXB9 2 datasets
Motif DE_12h DE_12h-HOXB9_MA1503.2 9 bp overlap
Motif DE_12h DE_12h-HOXB9_MA1503.2 9 bp overlap
HOXC10 2 datasets
Motif DE_12h DE_12h-HOXC10_MA0905.2 9 bp overlap
Motif DE_12h DE_12h-HOXC10_MA0905.2 9 bp overlap
HOXC13 1 dataset
Motif DE_12h DE_12h-HOXC13_MA0907.2 9 bp overlap
HOXC4 1 dataset
Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap
HOXC9 1 dataset
Motif DE_12h DE_12h-HOXC9_MA0485.3 9 bp overlap
HOXD10 1 dataset
Motif DE_12h DE_12h-HOXD10_MA1506.2 10 bp overlap
HOXD11 1 dataset
Motif DE_12h DE_12h-HOXD11_MA0908.2 9 bp overlap
HOXD12 2 datasets
Motif DE_12h DE_12h-HOXD12_MA0873.2 10 bp overlap
Motif DE_12h DE_12h-HOXD12_MA0873.2 10 bp overlap
HOXD4 1 dataset
Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Hoxa11 2 datasets
Motif DE_12h DE_12h-Hoxa11_MA0911.2 9 bp overlap
Motif DE_12h DE_12h-Hoxa11_MA0911.2 9 bp overlap
JUN 3 datasets
Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 372 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 350 bp overlap
JUND 2 datasets
Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap
ChIP Kasumi-1_RUNX1-KO GSE117105.JUND.Kasumi-1_RUNX1-KO 119 bp overlap
LIN54 1 dataset
Motif DE_12h DE_12h-LIN54_MA0619.2 7 bp overlap
Lef1 1 dataset
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
MAX::MYC 1 dataset
Motif DE_12h DE_12h-MAXMYC_MA0059.2 10 bp overlap
MED25 1 dataset
ChIP PC-3_FLAG GSE133445.MED25.PC-3_FLAG 239 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA1639.2 9 bp overlap
MEIS2 1 dataset
Motif DE_12h DE_12h-MEIS2_MA1640.2 9 bp overlap
MXI1 2 datasets
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
Motif DE_12h DE_12h-MXI1_MA1108.3 6 bp overlap
MYCN 1 dataset
ChIP SH-EP_MYCNER_plusOHT GSE111905.MYCN.SH-EP_MYCNER_plusOHT 150 bp overlap
NANOG 5 datasets
ChIP WA01 ERP004238.NANOG.WA01 245 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 293 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 229 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 194 bp overlap
ChIP hESC GSE18292.NANOG.hESC 177 bp overlap
NFATC3 2 datasets
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NFATC4 1 dataset
Motif DE_12h DE_12h-NFATC4_MA1525.3 9 bp overlap
NKX6-1 1 dataset
Motif DE_12h DE_12h-NKX6-1_MA0674.2 7 bp overlap
NKX6-3 1 dataset
Motif DE_12h DE_12h-NKX6-3_MA1530.2 8 bp overlap
NR2F1 1 dataset
Motif DE_12h DE_12h-NR2F1_MA1537.2 13 bp overlap
Nanog 1 dataset
Motif DE_12h DE_12h-Nanog_MA2339.1 7 bp overlap
Nfatc1 2 datasets
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_12h DE_12h-Nfatc2_MA0152.3 8 bp overlap
Nr2F6 1 dataset
Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap
Nr2f6 1 dataset
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
ONECUT3 1 dataset
Motif DE_12h DE_12h-ONECUT3_MA0757.2 12 bp overlap
PAX1 1 dataset
Motif DE_12h DE_12h-PAX1_MA0779.2 16 bp overlap
PAX2 1 dataset
Motif DE_12h DE_12h-PAX2_MA0067.3 16 bp overlap
PAX3 1 dataset
Motif DE_12h DE_12h-PAX3_MA0780.1 10 bp overlap
PAX9 1 dataset
Motif DE_12h DE_12h-PAX9_MA0781.2 16 bp overlap
PBX2 1 dataset
Motif DE_12h DE_12h-PBX2_MA1113.3 9 bp overlap
PDX1 3 datasets
ChIP hiPSC GSE125768.PDX1.hiPSC 430 bp overlap
ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 171 bp overlap
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 397 bp overlap
PHOX2A 1 dataset
Motif DE_12h DE_12h-PHOX2A_MA0713.1 11 bp overlap
POU4F1 1 dataset
Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap
POU4F2 1 dataset
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
POU4F3 1 dataset
Motif DE_12h DE_12h-POU4F3_MA0791.2 12 bp overlap
POU6F1 1 dataset
Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap
POU6F2 1 dataset
Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap
PPARD 1 dataset
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
Pax7 1 dataset
Motif DE_12h DE_12h-Pax7_MA0680.3 10 bp overlap
Prdm4 1 dataset
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1618.2 9 bp overlap
RAD21 10 datasets
ChIP H1 ENCFF698EWO 241 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP HUVEC-C_hypoxia GSE94872.RAD21.HUVEC-C_hypoxia 202 bp overlap
ChIP MCF-7 ENCFF724VCQ 257 bp overlap
ChIP MCF-7 GSE72082.RAD21.MCF-7 171 bp overlap
ChIP MCF-7 ENCSR000BTQ.RAD21.MCF-7 167 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 172 bp overlap
ChIP MCF-7 ENCSR703TNG.RAD21.MCF-7 125 bp overlap
ChIP MDM GSE103477.RAD21.MDM 168 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 203 bp overlap
RARA 3 datasets
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
ChIP hiPSC_D3 GSE109172.RARA.hiPSC_D3 354 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 222 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
Rxra 1 dataset
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
SATB1 1 dataset
Motif DE_12h DE_12h-SATB1_MA1963.2 7 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 295 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 327 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 139 bp overlap
SMC3 1 dataset
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 198 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap
STAG1 4 datasets
ChIP HeLa GSE126990.STAG1.HeLa 341 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 330 bp overlap
ChIP MCF-7 ERP000209.STAG1.MCF-7 209 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 164 bp overlap
STAT3 1 dataset
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 94 bp overlap
TCF7 1 dataset
Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 1 dataset
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
TFAP4 2 datasets
Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap
Motif DE_12h DE_12h-TFAP4_MA1570.1 10 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1575.2 17 bp overlap
TP53 1 dataset
ChIP H9 GSE142050.TP53.H9 182 bp overlap
Yy1 1 dataset
Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap
ZIC1 1 dataset
Motif DE_12h DE_12h-ZIC1_MA0696.1 14 bp overlap
ZIC4 1 dataset
Motif DE_12h DE_12h-ZIC4_MA0751.2 14 bp overlap
ZIC5 1 dataset
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
ZNF143 1 dataset
ChIP HeLa GSE39263.ZNF143.HeLa 368 bp overlap
ZNF24 1 dataset
Motif DE_12h DE_12h-ZNF24_MA1124.1 13 bp overlap