chr1 : 87,742,620 87,742,893
273 bp 72 TFs 0 linked genes
This 273 bp open chromatin element has no linked target genes and is bound by 72 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:87,737,620 – 87,747,893
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
72 transcription factors
Source
Cell type
ASXL3 1 dataset
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 273 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 273 bp overlap
BRD4 7 datasets
ChIP K-562_iBET GSE138084.BRD4.K-562_iBET 233 bp overlap
ChIP NCI-H1963 GSE145028.BRD4.NCI-H1963 273 bp overlap
ChIP NCI-H1963_dBET6 GSE145028.BRD4.NCI-H1963_dBET6 219 bp overlap
ChIP NCI-H1963_shASXL3 GSE145028.BRD4.NCI-H1963_shASXL3 273 bp overlap
ChIP RH4 GSE83726.BRD4.RH4 273 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 273 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 222 bp overlap
CTCF 1 dataset
ChIP RH4 GSE83726.CTCF.RH4 233 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF031ISE 224 bp overlap
ChIP BLaER1 ENCFF274GAT 273 bp overlap
ChIP BLaER1 ENCFF460KDD 259 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 170 bp overlap
ESR1 7 datasets
ChIP Ishikawa ENCSR000BQR.ESR1.Ishikawa 158 bp overlap
ChIP Ishikawa ENCSR000BKL.ESR1.Ishikawa 126 bp overlap
ChIP Ishikawa_C2-14 GSE147141.ESR1.Ishikawa_C2-14 191 bp overlap
ChIP Ishikawa_ETV4-KO1_Mili GSE129803.ESR1.Ishikawa_ETV4-KO1_Mili 179 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 273 bp overlap
ChIP Ishikawa_siETV4-96h GSE129803.ESR1.Ishikawa_siETV4-96h 66 bp overlap
ChIP Ishikawa_siNTC-72h GSE129803.ESR1.Ishikawa_siNTC-72h 232 bp overlap
ETS1 1 dataset
ChIP SCC-25 GSE109884.ETS1.SCC-25 214 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 180 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 225 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 168 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 175 bp overlap
FOXA1 2 datasets
ChIP MCF-7_TAMR_E2_TAM ERP000380.FOXA1.MCF-7_TAMR_E2_TAM 119 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 133 bp overlap
FOXO1-PAX3 2 datasets
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 173 bp overlap
ChIP RH4_Entinostat-6H GSE116344.FOXO1-PAX3.RH4_Entinostat-6H 151 bp overlap
GFI1B 2 datasets
ChIP HEK293 ENCFF264FBS 169 bp overlap
ChIP HEK293 ENCSR445PDR.GFI1B.HEK293 147 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 96 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 188 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 145 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 267 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 273 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 258 bp overlap
HIC1 1 dataset
ChIP HEK293 ENCFF252CFL 273 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 103 bp overlap
KLF1 2 datasets
ChIP HEK293 ENCFF159QSW 141 bp overlap
ChIP HEK293 ENCSR859BMR.KLF1.HEK293 224 bp overlap
MAX 1 dataset
ChIP NCI-H128 GSE41105.MAX.NCI-H128 196 bp overlap
MAZ 1 dataset
ChIP HEK293 GSE76494.MAZ.HEK293 129 bp overlap
MED1 1 dataset
ChIP RH4 GSE83726.MED1.RH4 256 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 218 bp overlap
MYC 1 dataset
ChIP NCI-H2171 GSE41105.MYC.NCI-H2171 224 bp overlap
MYCN 3 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 172 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 273 bp overlap
ChIP RH4 GSE83726.MYCN.RH4 271 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 209 bp overlap
MYOG 2 datasets
ChIP RH4 GSE83726.MYOG.RH4 169 bp overlap
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 227 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 231 bp overlap
NELFE 1 dataset
ChIP K-562_HS GSE112379.NELFE.K-562_HS 188 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 128 bp overlap
NR3C1 1 dataset
ChIP Ishikawa ENCSR000BJC.NR3C1.Ishikawa 186 bp overlap
PAX3-FOXO1 2 datasets
ChIP RH3 GSE83726.PAX3-FOXO1.RH3 173 bp overlap
ChIP RH4 GSE140115.PAX3-FOXO1.RH4 273 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 273 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 60 bp overlap
POLR2A 1 dataset
ChIP SK-N-MC ENCFF088IVG 200 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 192 bp overlap
RAD21 2 datasets
ChIP Ishikawa ENCSR000BTU.RAD21.Ishikawa 153 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 273 bp overlap
RBBP4 1 dataset
ChIP RH5 GSE155861.RBBP4.RH5 201 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 135 bp overlap
SMARCA4 1 dataset
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 200 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 273 bp overlap
SMARCC1 3 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 144 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 102 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 273 bp overlap
SOX2 2 datasets
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 180 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 220 bp overlap
SOX8 2 datasets
ChIP RH4 GSE116344.SOX8.RH4 218 bp overlap
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 273 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 273 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 160 bp overlap
SS18 1 dataset
ChIP SYO-1_shCt GSE139053.SS18.SYO-1_shCt 273 bp overlap
SUZ12 1 dataset
ChIP LNCaP GSE39459.SUZ12.LNCaP 194 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 87 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 269 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 159 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 159 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 98 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 135 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 135 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 273 bp overlap
ZBTB44 2 datasets
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 73 bp overlap
ChIP HEK293 ENCSR076STQ.ZBTB44.HEK293 97 bp overlap
ZBTB7A 1 dataset
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 243 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 192 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 273 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 273 bp overlap
ZNF362 2 datasets
ChIP HEK293 ENCFF436CGE 273 bp overlap
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 273 bp overlap
ZNF391 2 datasets
ChIP HEK293 ENCFF835SNY 187 bp overlap
ChIP HEK293 ENCSR210MET.ZNF391.HEK293 114 bp overlap
ZNF423 2 datasets
ChIP HEK293 ENCFF937QHI 197 bp overlap
ChIP HEK293 ENCSR477OJI.ZNF423.HEK293 126 bp overlap
ZNF479 1 dataset
ChIP HEK293T GSE78099.ZNF479.HEK293T 125 bp overlap
ZNF501 1 dataset
ChIP HEK293 ENCFF066RAQ 273 bp overlap
ZNF519 1 dataset
ChIP HEK293T GSE78099.ZNF519.HEK293T 128 bp overlap
ZNF692 2 datasets
ChIP HEK293 ENCFF040AZE 259 bp overlap
ChIP HEK293 ENCSR418MKG.ZNF692.HEK293 145 bp overlap
ZNF816 1 dataset
ChIP HEK293 GSE76494.ZNF816.HEK293 165 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 262 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 273 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 61 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 175 bp overlap