chr1 : 9,319,794 9,320,541
747 bp 91 TFs 5 linked genes
This 747 bp open chromatin element is linked to 5 target genes and is bound by 91 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
SPSB1 27.3 kb Distal Multiome
H6PD 85.4 kb Distal Multiome
GPR157 191.4 kb Distal Multiome
SLC25A33 219.3 kb Distal Multiome
TMEM201 268.7 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:9,314,794 – 9,325,541
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
91 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP MCF-7 GSE144036.AFF4.MCF-7 138 bp overlap
AR 2 datasets
ChIP prostate_cancer-associated-fibroblasts GSE90772.AR.prostate_cancer-associated-fibroblasts 296 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 324 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 724 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 134 bp overlap
BCL6 1 dataset
ChIP OCI-Ly1 GSE29282.BCL6.OCI-Ly1 704 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 419 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 202 bp overlap
BRD4 7 datasets
ChIP COLO-205 GSE73319.BRD4.COLO-205 499 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 262 bp overlap
ChIP T-47D ERP003925.BRD4.T-47D 166 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 174 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 346 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 394 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 164 bp overlap
CREBBP 1 dataset
ChIP LS180_125 GSE39277.CREBBP.LS180_125 106 bp overlap
CTBP1 2 datasets
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 108 bp overlap
ChIP K-562 ENCSR201NQZ.CTBP1.K-562 246 bp overlap
CTCF 6 datasets
ChIP GM23338 ENCFF772DML 173 bp overlap
ChIP WERI-Rb-1 ENCFF349QKF 208 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 153 bp overlap
ChIP endodermal cell ENCFF471YCZ 355 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 101 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 137 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF031ISE 305 bp overlap
ChIP BLaER1 ENCFF262VBH 292 bp overlap
ChIP BLaER1 ENCFF262VBH 53 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 240 bp overlap
E2F6 2 datasets
ChIP WA01 ENCSR000BSI.E2F6.WA01 339 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 178 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 166 bp overlap
EGR1 1 dataset
ChIP A-375 GSE116190.EGR1.A-375 359 bp overlap
ERG 1 dataset
ChIP MCF-7 GSE23730.ERG.MCF-7 198 bp overlap
ESR1 7 datasets
ChIP Ishikawa_C2-14 GSE147141.ESR1.Ishikawa_C2-14 245 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 386 bp overlap
ChIP Ishikawa_DMSO_D538G_clone3 GSE132426.ESR1.Ishikawa_DMSO_D538G_clone3 153 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 738 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 392 bp overlap
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 297 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 280 bp overlap
ETV6 1 dataset
ChIP WTC11 ENCFF812SCD 140 bp overlap
EZH2 2 datasets
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 208 bp overlap
ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 321 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 501 bp overlap
ChIP DE DE-FOXA2-2 568 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 349 bp overlap
ChIP DE DE-GATA4-2 662 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 338 bp overlap
ChIP DE DE-GATA6-2 687 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 309 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 283 bp overlap
ChIP foregut GSE117136.GATA6.foregut 371 bp overlap
GLIS2 1 dataset
Motif DE_72h DE_72h-GLIS2_MA0736.1 14 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 734 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 247 bp overlap
HNF4A 2 datasets
ChIP IM95 GSE114018.HNF4A.IM95 232 bp overlap
ChIP KATO-III GSE114018.HNF4A.KATO-III 230 bp overlap
ID3 1 dataset
ChIP K-562 ENCSR005NMT.ID3.K-562 212 bp overlap
IFNA1 1 dataset
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 182 bp overlap
JUN 6 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 509 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 490 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 281 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 531 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 266 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 130 bp overlap
MAX 5 datasets
ChIP H1 ENCFF914VQY 357 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 727 bp overlap
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 655 bp overlap
ChIP WTC11 ENCFF223QFY 563 bp overlap
ChIP WTC11 ENCFF223QFY 569 bp overlap
MCM3 1 dataset
ChIP K-562 ENCSR990AZC.MCM3.K-562 57 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 393 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 199 bp overlap
MYC 2 datasets
ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 445 bp overlap
ChIP P493-6 GSE77061.MYC.P493-6 143 bp overlap
MYOCD 1 dataset
ChIP A-549 GSE128921.MYOCD.A-549 293 bp overlap
NANOG 3 datasets
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 428 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 150 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_FLAG_G GSE118494.NCAPH2.IMR-90_FLAG_G 245 bp overlap
NFIA 1 dataset
Motif DE_72h DE_72h-NFIA_MA0670.2 6 bp overlap
NFIC 3 datasets
Motif DE_72h DE_72h-NFIC_MA0161.3 7 bp overlap
ChIP Ishikawa ENCFF029AAD 381 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 269 bp overlap
NFIX 1 dataset
Motif DE_72h DE_72h-NFIX_MA0671.2 6 bp overlap
NRF1 1 dataset
ChIP K562 ENCFF791UHF 84 bp overlap
OGG1 2 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 232 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 223 bp overlap
PLAG1 2 datasets
ChIP K-562 GSE111469.PLAG1.K-562 191 bp overlap
ChIP K-562 GSE111469.PLAG1.K-562 269 bp overlap
POU5F1 4 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 622 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 568 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 199 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 170 bp overlap
RB1 1 dataset
ChIP GM12878 ENCSR785OKZ.RB1.GM12878 269 bp overlap
RBBP5 2 datasets
ChIP WA01 ENCSR000AQC.RBBP5.WA01 379 bp overlap
ChIP WA01 ENCSR000AQC.RBBP5.WA01 186 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 213 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 265 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 214 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 691 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 691 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 483 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 366 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 618 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 531 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 331 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 287 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 211 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 507 bp overlap
SMARCB1 1 dataset
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 170 bp overlap
SOX14 1 dataset
Motif DE_72h DE_72h-SOX14_MA1562.2 9 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 511 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 550 bp overlap
SOX18 1 dataset
Motif DE_72h DE_72h-SOX18_MA1563.2 8 bp overlap
SOX8 1 dataset
Motif DE_72h DE_72h-SOX8_MA0868.3 7 bp overlap
SOX9 1 dataset
Motif DE_72h DE_72h-SOX9_MA0077.2 8 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 140 bp overlap
SREBP2 1 dataset
ChIP HCC70 GSE126380.SREBP2.HCC70 307 bp overlap
SUZ12 2 datasets
ChIP K-562 ENCSR000AUC.SUZ12.K-562 226 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 269 bp overlap
Sox11 1 dataset
Motif DE_72h DE_72h-Sox11_MA0869.3 8 bp overlap
Sox17 1 dataset
Motif DE_72h DE_72h-Sox17_MA0078.3 10 bp overlap
Sox5 1 dataset
Motif DE_72h DE_72h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_72h DE_72h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_72h DE_72h-Sox7_MA2095.1 10 bp overlap
Spz1 1 dataset
Motif DE_72h DE_72h-Spz1_MA0111.1 11 bp overlap
TBP 1 dataset
ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 302 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 251 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 252 bp overlap
TCF3 2 datasets
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 184 bp overlap
ChIP NPC GSE154479.TCF3.NPC 244 bp overlap
THAP1 1 dataset
ChIP K-562 ENCSR000BNN.THAP1.K-562 143 bp overlap
TP63 2 datasets
ChIP keratinocyte GSE33571.TP63.keratinocyte 134 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 197 bp overlap
TRIM28 1 dataset
ChIP HCT-116 GSE72622.TRIM28.HCT-116 129 bp overlap
USF2 1 dataset
ChIP WTC11 ENCFF139JAW 254 bp overlap
YY1 4 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP Huh-7 GSE97411.YY1.Huh-7 273 bp overlap
ChIP Ishikawa ENCSR000BSY.YY1.Ishikawa 100 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 287 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 319 bp overlap
ZBTB7A 2 datasets
ChIP Ishikawa ENCSR000BSZ.ZBTB7A.Ishikawa 132 bp overlap
ChIP K-562 ENCSR000BME.ZBTB7A.K-562 104 bp overlap
ZFP91 1 dataset
ChIP HepG2 ENCFF012CME 570 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 679 bp overlap
ZNF143 1 dataset
ChIP MCF-7 GSE76454.ZNF143.MCF-7 74 bp overlap
ZNF263 3 datasets
ChIP K-562 ENCSR000EWN.ZNF263.K-562 220 bp overlap
ChIP K-562 ENCSR000EWN.ZNF263.K-562 344 bp overlap
ChIP K562 ENCFF650LPZ 123 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF600 1 dataset
ChIP HEK293 ENCFF785JSX 80 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 147 bp overlap
ZSCAN22 1 dataset
ChIP HEK293 GSE76494.ZSCAN22.HEK293 304 bp overlap