chr4 : 90,028,302 – 90,029,057
755 bp 99 TFs 0 linked genes
This 755 bp open chromatin element has no linked target genes and is bound by 99 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:90,023,302 – 90,034,057
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
99 transcription factors
Source
Cell type
ARNTL 1 dataset
ChIP U2OS GSE44236.ARNTL.U2OS 179 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCFF037PYH 375 bp overlap
BACH1 2 datasets
ChIP GM12878 ENCFF576UEQ 365 bp overlap
ChIP GM12878 ENCSR636MKU.BACH1.GM12878 197 bp overlap
BCL11A 2 datasets
ChIP GM12878 ENCFF717YPR 271 bp overlap
ChIP GM12878 ENCSR000BHA.BCL11A.GM12878 380 bp overlap
BHLHE40 3 datasets
ChIP GM12878 ENCFF010ZUU 331 bp overlap
ChIP GM12878 ENCFF521IZR 405 bp overlap
ChIP GM12878 ENCSR987MTA.BHLHE40.GM12878 247 bp overlap
BMI1 1 dataset
ChIP GM12878 ENCSR469WII.BMI1.GM12878 486 bp overlap
BORCS8-MEF2B,MEF2B 2 datasets
ChIP GM12878 ENCFF427QAI 564 bp overlap
ChIP GM12878 ENCFF427QAI 569 bp overlap
COMMD3-BMI1,BMI1 1 dataset
ChIP GM12878 ENCFF249AMT 441 bp overlap
CUX1 2 datasets
Motif DE_48h DE_48h-CUX1_MA0754.3 9 bp overlap
Motif DE_60h DE_60h-CUX1_MA0754.3 9 bp overlap
DPF2 2 datasets
ChIP GM12878 ENCFF681AJV 597 bp overlap
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 632 bp overlap
Dux 2 datasets
Motif DE_48h DE_48h-Dux_MA0611.3 11 bp overlap
Motif DE_60h DE_60h-Dux_MA0611.3 11 bp overlap
E2F8 1 dataset
ChIP GM12878 ENCSR793HVL.E2F8.GM12878 71 bp overlap
EBF1 1 dataset
ChIP GM12878 ENCFF167CZS 321 bp overlap
ELF1 4 datasets
Motif DE_48h DE_48h-ELF1_MA0473.4 9 bp overlap
Motif DE_60h DE_60h-ELF1_MA0473.4 9 bp overlap
ChIP GM12878 ENCFF692SMY 457 bp overlap
ChIP GM12878 ENCSR841NDX.ELF1.GM12878 184 bp overlap
ELF3 2 datasets
Motif DE_48h DE_48h-ELF3_MA0640.3 9 bp overlap
Motif DE_60h DE_60h-ELF3_MA0640.3 9 bp overlap
EOMES 3 datasets
Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap
Motif DE_60h DE_60h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 331 bp overlap
EP300 3 datasets
ChIP GM12878 ENCFF039QRE 351 bp overlap
ChIP GM12878 ENCFF242HCG 361 bp overlap
ChIP GM12878 ENCSR000DZG.EP300.GM12878 162 bp overlap
Erg 2 datasets
Motif DE_48h DE_48h-Erg_MA0474.4 10 bp overlap
Motif DE_60h DE_60h-Erg_MA0474.4 10 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 709 bp overlap
ChIP DE DE-FOXA2-2 755 bp overlap
FOXB1 3 datasets
Motif DE_48h DE_48h-FOXB1_MA0845.1 11 bp overlap
Motif DE_60h DE_60h-FOXB1_MA0845.1 11 bp overlap
Motif DE_60h DE_60h-FOXB1_MA0845.1 11 bp overlap
FOXC1 2 datasets
Motif DE_48h DE_48h-FOXC1_MA0032.2 11 bp overlap
Motif DE_60h DE_60h-FOXC1_MA0032.2 11 bp overlap
GABPA 2 datasets
Motif DE_48h DE_48h-GABPA_MA0062.4 10 bp overlap
Motif DE_60h DE_60h-GABPA_MA0062.4 10 bp overlap
GATA4 3 datasets
ChIP DE DE-GATA4-1 681 bp overlap
ChIP DE DE-GATA4-2 690 bp overlap
ChIP foregut GSE117136.GATA4.foregut 271 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 641 bp overlap
ChIP DE DE-GATA6-2 671 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 614 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 606 bp overlap
GATAD2B 3 datasets
ChIP GM12878 ENCFF781IAU 537 bp overlap
ChIP GM12878 ENCFF781IAU 537 bp overlap
ChIP GM12878 ENCSR828NCB.GATAD2B.GM12878 554 bp overlap
Gfi1B 1 dataset
Motif DE_60h DE_60h-Gfi1B_MA0483.2 10 bp overlap
Hmga1 1 dataset
Motif DE_60h DE_60h-Hmga1_MA2124.1 8 bp overlap
IKZF1 3 datasets
ChIP GM12878 ENCFF753XDO 360 bp overlap
ChIP GM12878 ENCFF824TGK 617 bp overlap
ChIP GM12878 ENCFF824TGK 580 bp overlap
IKZF2 4 datasets
ChIP GM12878 ENCFF238LYK 571 bp overlap
ChIP GM12878 ENCFF918AID 551 bp overlap
ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 485 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 385 bp overlap
ISL2 1 dataset
Motif DE_60h DE_60h-ISL2_MA0914.2 6 bp overlap
LIN54 1 dataset
Motif DE_60h DE_60h-LIN54_MA0619.2 7 bp overlap
Lhx3 1 dataset
Motif DE_60h DE_60h-Lhx3_MA0135.2 12 bp overlap
MAF::NFE2 2 datasets
Motif DE_48h DE_48h-MAFNFE2_MA0501.2 11 bp overlap
Motif DE_60h DE_60h-MAFNFE2_MA0501.2 11 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 215 bp overlap
MAFG::NFE2L1 2 datasets
Motif DE_48h DE_48h-MAFGNFE2L1_MA0089.3 11 bp overlap
Motif DE_60h DE_60h-MAFGNFE2L1_MA0089.3 11 bp overlap
MEF2B 1 dataset
ChIP GM12878 ENCSR177VFS.MEF2B.GM12878 489 bp overlap
MEF2C 1 dataset
Motif DE_60h DE_60h-MEF2C_MA0497.2 11 bp overlap
MEIS1 2 datasets
Motif DE_48h DE_48h-MEIS1_MA0498.3 5 bp overlap
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MGA 2 datasets
Motif DE_48h DE_48h-MGA_MA0801.1 8 bp overlap
Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap
MLLT1 2 datasets
ChIP GM12878 ENCFF995GXC 248 bp overlap
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 615 bp overlap
MTA2 1 dataset
ChIP GM12878 ENCFF615CWQ 644 bp overlap
MXI1 1 dataset
Motif DE_60h DE_60h-MXI1_MA1108.3 6 bp overlap
MZF1 1 dataset
Motif DE_60h DE_60h-MZF1_MA0056.3 8 bp overlap
NBN 2 datasets
ChIP GM12878 ENCFF213ZNN 204 bp overlap
ChIP GM12878 ENCSR278SQL.NBN.GM12878 432 bp overlap
NFATC3 4 datasets
Motif DE_48h DE_48h-NFATC3_MA0625.3 6 bp overlap
Motif DE_60h DE_60h-NFATC3_MA0625.3 6 bp overlap
ChIP GM12878 ENCFF340KVJ 291 bp overlap
ChIP GM12878 ENCSR437GBJ.NFATC3.GM12878 624 bp overlap
NFATC4 2 datasets
Motif DE_48h DE_48h-NFATC4_MA1525.3 9 bp overlap
Motif DE_60h DE_60h-NFATC4_MA1525.3 9 bp overlap
NR2C1 2 datasets
Motif DE_48h DE_48h-NR2C1_MA1535.2 6 bp overlap
Motif DE_60h DE_60h-NR2C1_MA1535.2 6 bp overlap
NR2C2 2 datasets
Motif DE_48h DE_48h-NR2C2_MA1536.2 6 bp overlap
Motif DE_60h DE_60h-NR2C2_MA1536.2 6 bp overlap
NR2F1 2 datasets
ChIP GM12878 ENCFF273VKX 505 bp overlap
ChIP GM12878 ENCSR514VYD.NR2F1.GM12878 371 bp overlap
Nfatc1 2 datasets
Motif DE_48h DE_48h-Nfatc1_MA0624.3 6 bp overlap
Motif DE_60h DE_60h-Nfatc1_MA0624.3 6 bp overlap
Nfe2l2 2 datasets
Motif DE_48h DE_48h-Nfe2l2_MA0150.3 11 bp overlap
Motif DE_60h DE_60h-Nfe2l2_MA0150.3 11 bp overlap
Nr1H2 2 datasets
Motif DE_48h DE_48h-Nr1H2_MA1996.2 6 bp overlap
Motif DE_60h DE_60h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 2 datasets
Motif DE_48h DE_48h-Nr1H4_MA1110.3 6 bp overlap
Motif DE_60h DE_60h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 2 datasets
Motif DE_48h DE_48h-Nr1h3_MA2337.1 6 bp overlap
Motif DE_60h DE_60h-Nr1h3_MA2337.1 6 bp overlap
Nr1h3::Rxra 2 datasets
Motif DE_48h DE_48h-Nr1h3Rxra_MA0494.2 16 bp overlap
Motif DE_60h DE_60h-Nr1h3Rxra_MA0494.2 16 bp overlap
PAX4 2 datasets
Motif DE_48h DE_48h-PAX4_MA0068.2 8 bp overlap
Motif DE_60h DE_60h-PAX4_MA0068.2 8 bp overlap
PKNOX1 2 datasets
ChIP GM12878 ENCFF589FCY 213 bp overlap
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 394 bp overlap
POU2F1 1 dataset
Motif DE_60h DE_60h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_60h DE_60h-POU2F2_MA0507.3 13 bp overlap
POU3F1 1 dataset
Motif DE_60h DE_60h-POU3F1_MA0786.2 10 bp overlap
POU4F2 1 dataset
Motif DE_60h DE_60h-POU4F2_MA0683.2 15 bp overlap
POU5F1B 1 dataset
Motif DE_60h DE_60h-POU5F1B_MA0792.1 9 bp overlap
RB1 1 dataset
ChIP GM12878 ENCSR785OKZ.RB1.GM12878 279 bp overlap
RELB 1 dataset
ChIP GM12878 ENCFF217ADF 403 bp overlap
RFX7 2 datasets
Motif DE_48h DE_48h-RFX7_MA1554.2 8 bp overlap
Motif DE_60h DE_60h-RFX7_MA1554.2 8 bp overlap
RUNX3 1 dataset
Motif DE_60h DE_60h-RUNX3_MA0684.3 8 bp overlap
Rfx6 2 datasets
Motif DE_48h DE_48h-Rfx6_MA1724.2 9 bp overlap
Motif DE_60h DE_60h-Rfx6_MA1724.2 9 bp overlap
SKIL 1 dataset
ChIP GM12878 ENCSR212YKD.SKIL.GM12878 250 bp overlap
SMAD1 1 dataset
ChIP GM12878 ENCSR813DCK.SMAD1.GM12878 289 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 486 bp overlap
SMARCA5 1 dataset
ChIP GM12878 ENCSR706YUH.SMARCA5.GM12878 484 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 558 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 393 bp overlap
SP5 2 datasets
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
SP8 1 dataset
Motif DE_60h DE_60h-SP8_MA0747.2 11 bp overlap
Sox6 2 datasets
Motif DE_48h DE_48h-Sox6_MA0515.1 10 bp overlap
Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 187 bp overlap
TARDBP 1 dataset
ChIP GM12878 ENCFF866POT 148 bp overlap
TBR1 2 datasets
Motif DE_48h DE_48h-TBR1_MA0802.2 9 bp overlap
Motif DE_60h DE_60h-TBR1_MA0802.2 9 bp overlap
TBX1 2 datasets
Motif DE_48h DE_48h-TBX1_MA0805.1 8 bp overlap
Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap
TBX15 2 datasets
Motif DE_48h DE_48h-TBX15_MA0803.1 8 bp overlap
Motif DE_60h DE_60h-TBX15_MA0803.1 8 bp overlap
TBX18 2 datasets
Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
TBX2 2 datasets
Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap
Motif DE_60h DE_60h-TBX2_MA0688.2 9 bp overlap
TBX20 2 datasets
Motif DE_48h DE_48h-TBX20_MA0689.1 11 bp overlap
Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap
TBX21 3 datasets
Motif DE_48h DE_48h-TBX21_MA0690.3 10 bp overlap
Motif DE_60h DE_60h-TBX21_MA0690.3 10 bp overlap
ChIP GM12878 ENCFF951HUW 547 bp overlap
TBX3 2 datasets
Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap
Motif DE_60h DE_60h-TBX3_MA1566.3 9 bp overlap
TBX4 2 datasets
Motif DE_48h DE_48h-TBX4_MA0806.1 8 bp overlap
Motif DE_60h DE_60h-TBX4_MA0806.1 8 bp overlap
TBX5 2 datasets
Motif DE_48h DE_48h-TBX5_MA0807.1 8 bp overlap
Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap
TP53 1 dataset
ChIP IMR-90 GSE42728.TP53.IMR-90 115 bp overlap
TRIM22 3 datasets
ChIP GM12878 ENCFF919OMX 445 bp overlap
ChIP GM12878 ENCSR637QAM.TRIM22.GM12878 568 bp overlap
ChIP GM12878 ENCSR835XKS.TRIM22.GM12878 653 bp overlap
Tbx6 2 datasets
Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
ZBTB7B 2 datasets
Motif DE_48h DE_48h-ZBTB7B_MA0694.2 10 bp overlap
Motif DE_60h DE_60h-ZBTB7B_MA0694.2 10 bp overlap
ZBTB7C 2 datasets
Motif DE_48h DE_48h-ZBTB7C_MA0695.2 8 bp overlap
Motif DE_60h DE_60h-ZBTB7C_MA0695.2 8 bp overlap
ZNF143 1 dataset
Motif DE_60h DE_60h-ZNF143_MA0088.2 16 bp overlap
ZNF217 2 datasets
ChIP GM12878 ENCFF978IGL 465 bp overlap
ChIP GM12878 ENCSR764CZW.ZNF217.GM12878 291 bp overlap
ZNF24 2 datasets
ChIP GM12878 ENCFF688STO 147 bp overlap
ChIP GM12878 ENCSR072PWP.ZNF24.GM12878 292 bp overlap
ZNF667 1 dataset
Motif DE_60h DE_60h-ZNF667_MA1984.2 11 bp overlap
ZNF687 1 dataset
ChIP GM12878 ENCFF233SGE 457 bp overlap
ZNF75D 1 dataset
Motif DE_60h DE_60h-ZNF75D_MA1601.2 12 bp overlap
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