chr4 : 24,321,560 – 24,322,104
544 bp 86 TFs 1 linked gene
This 544 bp open chromatin element is linked to ENSG00000289902 and is bound by 86 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000289902 106 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:24,316,560 – 24,327,104
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
AFF4 3 datasets
ChIP HeLa GSE40632.AFF4.HeLa 460 bp overlap
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 320 bp overlap
ChIP HeLa_EGF GSE40632.AFF4.HeLa_EGF 347 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 181 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 536 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 227 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 544 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 442 bp overlap
BHLHE22 1 dataset
Motif ES_0h ES_0h-BHLHE22_MA1635.2 6 bp overlap
BRD2 4 datasets
ChIP SUM149PT_DMSO GSE131097.BRD2.SUM149PT_DMSO 115 bp overlap
ChIP SUM149PT_JQ1 GSE131097.BRD2.SUM149PT_JQ1 195 bp overlap
ChIP SUM149PT_R_DMSO GSE131097.BRD2.SUM149PT_R_DMSO 233 bp overlap
ChIP SUM159PT_JQ1_MGSK2801 GSE116879.BRD2.SUM159PT_JQ1_MGSK2801 123 bp overlap
BRD4 14 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 374 bp overlap
ChIP HeLa GSE151038.BRD4.HeLa 346 bp overlap
ChIP HeLa_JQ1 GSE151038.BRD4.HeLa_JQ1 279 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 233 bp overlap
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 179 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 234 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 151 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 286 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 318 bp overlap
ChIP SUM159PT_DMSO_48h GSE87418.BRD4.SUM159PT_DMSO_48h 53 bp overlap
ChIP SUM159PT_DMSO_72h GSE87418.BRD4.SUM159PT_DMSO_72h 67 bp overlap
ChIP SUM159PT_Dox_48h GSE87418.BRD4.SUM159PT_Dox_48h 91 bp overlap
ChIP SUM159PT_shMYC_DMSO_48h GSE87418.BRD4.SUM159PT_shMYC_DMSO_48h 145 bp overlap
ChIP SUM159PT_shMYC_dox_48h GSE87418.BRD4.SUM159PT_shMYC_dox_48h 166 bp overlap
CBX8 2 datasets
ChIP A-549 ENCSR616MOB.CBX8.A-549 319 bp overlap
ChIP K-562 ENCSR000ATW.CBX8.K-562 544 bp overlap
CHD1 2 datasets
ChIP HeLa-S3 ENCSR392EAA.CHD1.HeLa-S3 272 bp overlap
ChIP HeLa-S3 ENCSR392EAA.CHD1.HeLa-S3 76 bp overlap
CHD7 4 datasets
ChIP H1 ENCFF126NLU 539 bp overlap
ChIP H1 ENCFF126NLU 383 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 245 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 540 bp overlap
CREBBP 1 dataset
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 179 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 453 bp overlap
CTCF 2 datasets
ChIP K-562_11698 GSE131349.CTCF.K-562_11698 107 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 256 bp overlap
Dmrt1 1 dataset
Motif ES_0h ES_0h-Dmrt1_MA1603.2 9 bp overlap
ELL2 2 datasets
ChIP HeLa GSE40632.ELL2.HeLa 213 bp overlap
ChIP HeLa_DOX GSE40632.ELL2.HeLa_DOX 56 bp overlap
EP300 3 datasets
ChIP HeLa-S3 ENCSR000ECV.EP300.HeLa-S3 158 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 136 bp overlap
ChIP hESC GSE17917.EP300.hESC 295 bp overlap
ESR1 1 dataset
ChIP MCF-7 GSE35109.ESR1.MCF-7 112 bp overlap
ETV2::FOXI1 1 dataset
Motif ES_0h ES_0h-ETV2FOXI1_MA1942.2 11 bp overlap
ETV5::FOXI1 1 dataset
Motif ES_0h ES_0h-ETV5FOXI1_MA1946.2 12 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 544 bp overlap
EZH2_phosphoT487 1 dataset
ChIP neuron_bipolar_doxy_4d ENCSR886KKK.EZH2_phosphoT487.neuron_bipolar_doxy_4d 263 bp overlap
FLI1::FOXI1 1 dataset
Motif ES_0h ES_0h-FLI1FOXI1_MA1950.2 11 bp overlap
FOXA1 1 dataset
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 83 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-2 363 bp overlap
FOXK1 1 dataset
ChIP WTC11 ENCFF875IGU 391 bp overlap
FOXO1::ELF1 1 dataset
Motif ES_0h ES_0h-FOXO1ELF1_MA1953.2 13 bp overlap
FOXO1::ELK1 1 dataset
Motif ES_0h ES_0h-FOXO1ELK1_MA1954.2 13 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 128 bp overlap
GATA6 1 dataset
ChIP OACP4-C GSE132680.GATA6.OACP4-C 187 bp overlap
GTF2F1 1 dataset
ChIP HeLa-S3 ENCSR000ECZ.GTF2F1.HeLa-S3 255 bp overlap
HDAC2 2 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 227 bp overlap
INTS11 1 dataset
ChIP HeLa GSE125534.INTS11.HeLa 166 bp overlap
JUN 2 datasets
ChIP ESC S24-ESC-d0-JUN-exp1 406 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 376 bp overlap
LIN54 1 dataset
Motif ES_0h ES_0h-LIN54_MA0619.2 7 bp overlap
MEF2D 1 dataset
ChIP retina_Hu13 GSE137311.MEF2D.retina_Hu13 188 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 314 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 173 bp overlap
NANOG 10 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 297 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 544 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 530 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 183 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 522 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 544 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 544 bp overlap
ChIP hESC GSE20650.NANOG.hESC 199 bp overlap
ChIP hESC GSE18292.NANOG.hESC 142 bp overlap
NFATC3 1 dataset
Motif ES_0h ES_0h-NFATC3_MA0625.3 6 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 57 bp overlap
Neurod2 1 dataset
Motif ES_0h ES_0h-Neurod2_MA1993.2 6 bp overlap
Nfatc1 1 dataset
Motif ES_0h ES_0h-Nfatc1_MA0624.3 6 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
Olig2 1 dataset
Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 232 bp overlap
POLR2A 1 dataset
ChIP HeLa-S3 ENCFF224LWS 77 bp overlap
POU2F3 1 dataset
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
POU5F1 7 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 544 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 471 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 302 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 282 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 537 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 238 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 273 bp overlap
Pou5f1::Sox2 1 dataset
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 4 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 482 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 185 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 452 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 180 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 74 bp overlap
REST 1 dataset
ChIP hippocampus GSE144226.REST.hippocampus 179 bp overlap
RNF2 5 datasets
ChIP K-562 ENCSR820GND.RNF2.K-562 544 bp overlap
ChIP K562 ENCFF022XJR 247 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 364 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 120 bp overlap
ChIP fibroblast GSE139053.RNF2.fibroblast 141 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 204 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 169 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 160 bp overlap
SMARCA2 3 datasets
ChIP NPC_K755R-pos GSE122631.SMARCA2.NPC_K755R-pos 219 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 164 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 403 bp overlap
SMARCA4 8 datasets
ChIP K-562 ENCSR643VTW.SMARCA4.K-562 336 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 207 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 223 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 292 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 393 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 411 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 544 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 544 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 537 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 526 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 330 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 544 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d3 432 bp overlap
SOX10 1 dataset
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX2 7 datasets
ChIP HCC95 GSE137459.SOX2.HCC95 204 bp overlap
ChIP HNSC GSE69479.SOX2.HNSC 544 bp overlap
ChIP KYSE-70 GSE46837.SOX2.KYSE-70 351 bp overlap
ChIP hESC GSE69479.SOX2.hESC 180 bp overlap
ChIP hESC GSE18292.SOX2.hESC 135 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 397 bp overlap
ChIP hiPSC_KDP53_INHI GSE67282.SOX2.hiPSC_KDP53_INHI 293 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 339 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 186 bp overlap
SUPT5H 1 dataset
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 149 bp overlap
Stat6 1 dataset
Motif ES_0h ES_0h-Stat6_MA0520.2 10 bp overlap
TAF1 3 datasets
ChIP HeLa-S3 ENCFF556LCN 57 bp overlap
ChIP HeLa-S3 ENCFF556LCN 273 bp overlap
ChIP HeLa-S3 ENCSR000BHT.TAF1.HeLa-S3 175 bp overlap
TBP 1 dataset
ChIP HeLa-S3 ENCSR000EDD.TBP.HeLa-S3 343 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 383 bp overlap
TCF7L2 2 datasets
ChIP HeLa-S3 ENCFF673QAB 140 bp overlap
ChIP HeLa-S3 ENCFF673QAB 345 bp overlap
TFAP4 1 dataset
Motif ES_0h ES_0h-TFAP4_MA0691.1 10 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 336 bp overlap
Tcf12 1 dataset
Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap
UBN1 1 dataset
ChIP HeLa GSE45024.UBN1.HeLa 211 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 290 bp overlap
ZBTB43 1 dataset
ChIP WTC11 ENCFF058JUB 422 bp overlap
ZIC1 1 dataset
Motif ES_0h ES_0h-ZIC1_MA0696.1 14 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 434 bp overlap
ZNF35 1 dataset
Motif ES_0h ES_0h-ZNF35_MA2333.1 7 bp overlap
ZNF382 1 dataset
Motif ES_0h ES_0h-ZNF382_MA1594.1 24 bp overlap
ZNF677 1 dataset
Motif ES_0h ES_0h-ZNF677_MA2101.1 12 bp overlap
Zic1::Zic2 1 dataset
Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 1 dataset
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
Zic3 1 dataset
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap
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