chr4 : 6,201,655 – 6,202,156
501 bp 72 TFs 4 linked genes
This 501 bp open chromatin element is linked to 4 target genes and is bound by 72 transcription factors.
Linked Genes
4 genes
Distance
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000251408 171 bp At TSS Proximity
ENSG00000290803 923 bp At TSS Proximity
C4orf50 1.1 kb Proximal Proximity
JAKMIP1 1.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:6,196,655 – 6,207,156
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
72 transcription factors
Source
Cell type
ATF1 1 dataset
ChIP K-562 ENCSR091GVJ.ATF1.K-562 298 bp overlap
ATF3 3 datasets
ChIP GM12878 ENCFF358BXK 211 bp overlap
ChIP GM12878 ENCSR000BJY.ATF3.GM12878 197 bp overlap
ChIP H1 ENCFF852GZY 241 bp overlap
BCL6 1 dataset
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 286 bp overlap
BHLHE40 1 dataset
ChIP GM12878 ENCFF521IZR 405 bp overlap
BRD4 3 datasets
ChIP Jurkat GSE83777.BRD4.Jurkat 447 bp overlap
ChIP KOPT-K1 GSE54379.BRD4.KOPT-K1 496 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 300 bp overlap
CBFA2T2 1 dataset
ChIP K-562 ENCSR699PVC.CBFA2T2.K-562 193 bp overlap
CBX1 1 dataset
ChIP K-562 ENCSR948QLZ.CBX1.K-562 76 bp overlap
CBX5 1 dataset
ChIP GM12878 ENCFF542UDC 270 bp overlap
CDK7 1 dataset
ChIP Jurkat GSE50622.CDK7.Jurkat 215 bp overlap
CREB1 1 dataset
ChIP GM12878 ENCSR000BUF.CREB1.GM12878 162 bp overlap
DPF1 2 datasets
ChIP K-562 GSE97661.DPF1.K-562 282 bp overlap
ChIP MCF-7 GSE97661.DPF1.MCF-7 194 bp overlap
DPF2 1 dataset
ChIP GM12878 ENCSR509FWH.DPF2.GM12878 375 bp overlap
E2F6 2 datasets
ChIP K-562 ENCSR000EWJ.E2F6.K-562 265 bp overlap
ChIP K-562 ENCSR000BLI.E2F6.K-562 114 bp overlap
E4F1 1 dataset
ChIP K-562 ENCSR731LHZ.E4F1.K-562 288 bp overlap
EBF1 2 datasets
ChIP GM12878 ENCFF813OXE 265 bp overlap
ChIP MUTUL GSE75503.EBF1.MUTUL 235 bp overlap
ELF1 9 datasets
ChIP A-549 GSE122203.ELF1.A-549 111 bp overlap
ChIP GM12878 ENCFF432UGA 365 bp overlap
ChIP GM12878 ENCFF692SMY 180 bp overlap
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 464 bp overlap
ChIP GM12878 ENCSR841NDX.ELF1.GM12878 268 bp overlap
ChIP Hep-G2 ENCSR000BMZ.ELF1.Hep-G2 143 bp overlap
ChIP K-562 ENCSR000BMD.ELF1.K-562 212 bp overlap
ChIP K562 ENCFF496AKI 277 bp overlap
ChIP MCF-7 ENCSR502NRF.ELF1.MCF-7 207 bp overlap
ELF3 2 datasets
ChIP PDAC GSE64557.ELF3.PDAC 418 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 501 bp overlap
ELF4 1 dataset
ChIP K562 ENCFF940SAL 311 bp overlap
ERG 1 dataset
ChIP Jurkat GSE49091.ERG.Jurkat 277 bp overlap
ETS1 1 dataset
ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 308 bp overlap
EZH2 3 datasets
ChIP A-1847 GSE95643.EZH2.A-1847 501 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 434 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 61 bp overlap
FOXA1 7 datasets
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 148 bp overlap
ChIP VCaP_ETOH24H GSE58428.FOXA1.VCaP_ETOH24H 154 bp overlap
ChIP breast-cancer_ENOB-2848 GSE128018.FOXA1.breast-cancer_ENOB-2848 152 bp overlap
ChIP breast-cancer_ENOB-2849 GSE128018.FOXA1.breast-cancer_ENOB-2849 199 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 376 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 98 bp overlap
ChIP breast_tumor_Male_13 GSE104399.FOXA1.breast_tumor_Male_13 70 bp overlap
GABPA 1 dataset
ChIP K-562 ENCSR000BLO.GABPA.K-562 133 bp overlap
GABPB1 2 datasets
ChIP K-562 ENCSR138YYY.GABPB1.K-562 501 bp overlap
ChIP K562 ENCFF015GDS 343 bp overlap
GATA1 1 dataset
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 64 bp overlap
GATA6 3 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 434 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 190 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 380 bp overlap
GTF2F1 1 dataset
ChIP GM12878 ENCSR769ZTN.GTF2F1.GM12878 476 bp overlap
HCFC1 1 dataset
ChIP GM12878 ENCSR514VAY.HCFC1.GM12878 254 bp overlap
INTS13 1 dataset
ChIP monocyte GSE106359.INTS13.monocyte 160 bp overlap
IRF4 1 dataset
ChIP GM12878 ENCFF769ZDL 321 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 83 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 86 bp overlap
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 88 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 228 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 121 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 155 bp overlap
L3MBTL2 2 datasets
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 405 bp overlap
ChIP K562 ENCFF320EQC 453 bp overlap
MAX 12 datasets
ChIP K-562 ENCSR000EFV.MAX.K-562 155 bp overlap
ChIP K562 ENCFF110LJS 351 bp overlap
ChIP K562 ENCFF524IJO 346 bp overlap
ChIP MCF-7 ENCSR000BUL.MAX.MCF-7 199 bp overlap
ChIP NB4 ENCFF966MWB 277 bp overlap
ChIP NB4 ENCSR000EHS.MAX.NB4 128 bp overlap
ChIP P493-6 GSE36354.MAX.P493-6 467 bp overlap
ChIP P493-6 GSE42262.MAX.P493-6 424 bp overlap
ChIP P493-6_24HR GSE125863.MAX.P493-6_24HR 311 bp overlap
ChIP P493-6_4HR GSE125863.MAX.P493-6_4HR 300 bp overlap
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 253 bp overlap
ChIP P493-6_CMYC_24H GSE36354.MAX.P493-6_CMYC_24H 255 bp overlap
MEF2B 1 dataset
ChIP DLBCL GSE110682.MEF2B.DLBCL 198 bp overlap
MYB 1 dataset
ChIP Jurkat GSE59657.MYB.Jurkat 274 bp overlap
MYC 3 datasets
ChIP Jurkat GSE83777.MYC.Jurkat 252 bp overlap
ChIP P493-6 GSE77061.MYC.P493-6 235 bp overlap
ChIP P493-6_Dpy30-shRNA GSE101853.MYC.P493-6_Dpy30-shRNA 161 bp overlap
MYCN 1 dataset
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 303 bp overlap
NBN 1 dataset
ChIP GM12878 ENCSR278SQL.NBN.GM12878 381 bp overlap
NELFE 1 dataset
ChIP K-562_HS GSE112379.NELFE.K-562_HS 218 bp overlap
NFYB 5 datasets
ChIP GM12878 ENCFF474DNH 368 bp overlap
ChIP GM12878 ENCSR000DNM.NFYB.GM12878 263 bp overlap
ChIP Hep-G2 ENCSR935GZV.NFYB.Hep-G2 260 bp overlap
ChIP HepG2 ENCFF174VYX 380 bp overlap
ChIP K-562 ENCSR000EGQ.NFYB.K-562 205 bp overlap
NFYC 2 datasets
ChIP Hep-G2 ENCSR569ARC.NFYC.Hep-G2 379 bp overlap
ChIP HepG2 ENCFF836FYP 190 bp overlap
NR2C1 1 dataset
ChIP GM12878 ENCFF101ELO 357 bp overlap
NR2F1 3 datasets
ChIP GM12878 ENCFF273VKX 351 bp overlap
ChIP GM12878 ENCSR514VYD.NR2F1.GM12878 487 bp overlap
ChIP K-562 ENCSR970NKQ.NR2F1.K-562 339 bp overlap
PBX3 1 dataset
ChIP GM12878 ENCSR000BGR.PBX3.GM12878 130 bp overlap
PKNOX1 1 dataset
ChIP GM12878 ENCSR711XNY.PKNOX1.GM12878 340 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 425 bp overlap
POLR2A 12 datasets
ChIP GM12878 ENCFF263VRI 352 bp overlap
ChIP GM12878 ENCFF263VRI 431 bp overlap
ChIP GM12878 ENCFF412KAE 237 bp overlap
ChIP GM12878 ENCFF412KAE 501 bp overlap
ChIP GM12878 ENCFF521FXC 276 bp overlap
ChIP GM12878 ENCFF631ERR 339 bp overlap
ChIP GM12878 ENCFF631ERR 454 bp overlap
ChIP GM12892 ENCFF506PGQ 343 bp overlap
ChIP GM15510 ENCFF880HVJ 319 bp overlap
ChIP GM18505 ENCFF311CYB 354 bp overlap
ChIP GM18526 ENCFF599EPS 336 bp overlap
ChIP spleen ENCFF446ZGT 211 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 501 bp overlap
RAD51 5 datasets
ChIP GM12878 ENCFF916JXQ 198 bp overlap
ChIP GM12878 ENCSR482TWQ.RAD51.GM12878 326 bp overlap
ChIP K-562 ENCSR524BUE.RAD51.K-562 404 bp overlap
ChIP K562 ENCFF133ELP 183 bp overlap
ChIP MCF-7 ENCSR442VBJ.RAD51.MCF-7 232 bp overlap
RBAK 4 datasets
ChIP HEK293 ENCFF263SUK 159 bp overlap
ChIP HEK293 ENCSR441UBA.RBAK.HEK293 114 bp overlap
ChIP HEK293T GSE78099.RBAK.HEK293T 78 bp overlap
ChIP HepG2 ENCFF712MSJ 174 bp overlap
RBM25 1 dataset
ChIP K-562 ENCSR791OZM.RBM25.K-562 168 bp overlap
RNF2 1 dataset
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 402 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE68976.RUNX1.Jurkat 158 bp overlap
RUNX3 1 dataset
ChIP GM12878 ENCFF395WHA 227 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 170 bp overlap
SMARCA4 3 datasets
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 447 bp overlap
ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 336 bp overlap
ChIP J-Lat_GFP-Clone-A72_DMSO GSE100266.SMARCA4.J-Lat_GFP-Clone-A72_DMSO 191 bp overlap
SP1 1 dataset
ChIP GM12878 ENCSR000BHK.SP1.GM12878 152 bp overlap
SPI1 18 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 216 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 435 bp overlap
ChIP CTV-1_delA GSE128835.SPI1.CTV-1_delA 302 bp overlap
ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 353 bp overlap
ChIP CTV-1_delQA GSE128835.SPI1.CTV-1_delQA 344 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 256 bp overlap
ChIP GM12878 ENCFF134LCP 214 bp overlap
ChIP GM12891 ENCFF563IUT 241 bp overlap
ChIP GM12891 ENCSR000BIJ.SPI1.GM12891 210 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 190 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 151 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 232 bp overlap
ChIP K562 ENCFF410ORC 205 bp overlap
ChIP NB4 GSE128834.SPI1.NB4 194 bp overlap
ChIP NCI-H929 GSE56857.SPI1.NCI-H929 107 bp overlap
ChIP OCI-Ly7 GSE69558.SPI1.OCI-Ly7 285 bp overlap
ChIP RS4-11_DEX GSE71616.SPI1.RS4-11_DEX 181 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 171 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 131 bp overlap
TBX21 2 datasets
ChIP CD4_Th1 GSE62482.TBX21.CD4_Th1 182 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 311 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 381 bp overlap
TRIM28 2 datasets
ChIP HEK293 ENCFF582MWI 354 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 153 bp overlap
USF1 21 datasets
ChIP A-549 ENCSR000BPV.USF1.A-549 351 bp overlap
ChIP A-549 ENCSR000BJB.USF1.A-549 208 bp overlap
ChIP A-549 ENCSR000BHX.USF1.A-549 166 bp overlap
ChIP GM12878 ENCFF880HJL 185 bp overlap
ChIP GM12878 ENCSR000BGI.USF1.GM12878 426 bp overlap
ChIP H1 ENCFF090WVU 185 bp overlap
ChIP HCT-116 ENCSR000BVK.USF1.HCT-116 269 bp overlap
ChIP HCT116 ENCFF330PYP 365 bp overlap
ChIP Hep-G2 ENCSR000BGM.USF1.Hep-G2 197 bp overlap
ChIP HepG2 ENCFF201JKA 266 bp overlap
ChIP HepG2 ENCFF807KYJ 118 bp overlap
ChIP Ishikawa ENCFF728IEG 261 bp overlap
ChIP Ishikawa ENCSR000BSX.USF1.Ishikawa 333 bp overlap
ChIP K-562 ENCSR000BKT.USF1.K-562 295 bp overlap
ChIP K562 ENCFF202SFC 124 bp overlap
ChIP K562 ENCFF633EZB 89 bp overlap
ChIP SK-N-SH ENCFF967PDP 311 bp overlap
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 278 bp overlap
ChIP SK-N-SH ENCSR000BTZ.USF1.SK-N-SH 113 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 302 bp overlap
ChIP WTC11 ENCFF699QGS 425 bp overlap
USF2 20 datasets
ChIP A-549 ENCSR563FBT.USF2.A-549 313 bp overlap
ChIP A549 ENCFF343KII 337 bp overlap
ChIP GM12878 ENCFF078SJX 277 bp overlap
ChIP GM12878 GSE97661.USF2.GM12878 500 bp overlap
ChIP GM12878 ENCSR000DZU.USF2.GM12878 187 bp overlap
ChIP H1 ENCFF434EDF 277 bp overlap
ChIP Hep-G2 GSE97661.USF2.Hep-G2 397 bp overlap
ChIP Hep-G2 ENCSR145QNL.USF2.Hep-G2 340 bp overlap
ChIP Hep-G2 ENCSR000EEF.USF2.Hep-G2 211 bp overlap
ChIP HepG2 ENCFF671JRC 265 bp overlap
ChIP IMR-90 ENCFF438KUN 257 bp overlap
ChIP IMR-90 ENCSR513UQG.USF2.IMR-90 180 bp overlap
ChIP K-562 GSE111469.USF2.K-562 405 bp overlap
ChIP K-562 ENCSR359NFW.USF2.K-562 309 bp overlap
ChIP K-562 ENCSR578KEN.USF2.K-562 240 bp overlap
ChIP K-562 ENCSR000EHG.USF2.K-562 141 bp overlap
ChIP K562 ENCFF306QPU 501 bp overlap
ChIP K562 ENCFF397QGU 147 bp overlap
ChIP WA01 ENCSR000ECD.USF2.WA01 210 bp overlap
ChIP WTC11 ENCFF139JAW 232 bp overlap
ZBTB40 1 dataset
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 270 bp overlap
ZMYM3 2 datasets
ChIP GM12878 GSE97661.ZMYM3.GM12878 158 bp overlap
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 133 bp overlap
ZNF12 5 datasets
ChIP HEK293T GSE78099.ZNF12.HEK293T 257 bp overlap
ChIP Hep-G2 ENCSR711KBM.ZNF12.Hep-G2 297 bp overlap
ChIP HepG2 ENCFF347LSW 105 bp overlap
ChIP K-562 ENCSR041YBR.ZNF12.K-562 221 bp overlap
ChIP K562 ENCFF867LAR 89 bp overlap
ZNF143 1 dataset
ChIP GM12878 ENCSR936XTK.ZNF143.GM12878 359 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 102 bp overlap
ZNF687 2 datasets
ChIP GM12878 ENCFF233SGE 365 bp overlap
ChIP GM12878 ENCSR859FDL.ZNF687.GM12878 247 bp overlap
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