chr3 : 142,577,802 – 142,577,948
146 bp 76 TFs 1 linked gene
This 146 bp open chromatin element is linked to ATR and is bound by 76 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ATR 784 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:142,572,802 – 142,582,948
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
AR 9 datasets
ChIP LNCaP_DHT GSE125245.AR.LNCaP_DHT 77 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 140 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 130 bp overlap
ChIP LNCaP_sgCtrl GSE117430.AR.LNCaP_sgCtrl 105 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 146 bp overlap
ChIP VCaP-LTAD_DHT_10nM GSE94577.AR.VCaP-LTAD_DHT_10nM 146 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 146 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 146 bp overlap
ChIP prostate-cancer_C4-2-CON GSE136128.AR.prostate-cancer_C4-2-CON 83 bp overlap
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 68 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 91 bp overlap
ATF7 2 datasets
ChIP GM12878 ENCFF037PYH 140 bp overlap
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 72 bp overlap
BRD1 1 dataset
ChIP RKO GSE47190.BRD1.RKO 146 bp overlap
BRD4 1 dataset
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 142 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 146 bp overlap
CTCF 1 dataset
ChIP endodermal cell ENCFF471YCZ 146 bp overlap
CTCFL 1 dataset
ChIP FT282 GSE131931.CTCFL.FT282 111 bp overlap
CUX1 1 dataset
ChIP MCF-7 ENCFF779ATB 78 bp overlap
DRAP1 1 dataset
ChIP Hep-G2 ENCSR765MKZ.DRAP1.Hep-G2 109 bp overlap
E2F1 1 dataset
ChIP K562 ENCFF191BFW 146 bp overlap
E2F6 4 datasets
ChIP H1 ENCFF785DWK 146 bp overlap
ChIP K-562 ENCSR000EWJ.E2F6.K-562 143 bp overlap
ChIP K-562 ENCSR000BLI.E2F6.K-562 92 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 146 bp overlap
E4F1 1 dataset
ChIP K-562 ENCSR731LHZ.E4F1.K-562 67 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 77 bp overlap
EOMES 2 datasets
Motif DE_24h DE_24h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 138 bp overlap
ESRRA 1 dataset
ChIP BT-474 GSE81651.ESRRA.BT-474 80 bp overlap
FOS 1 dataset
ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 146 bp overlap
FOXA1 25 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 108 bp overlap
ChIP 22Rv1_CST GSE123618.FOXA1.22Rv1_CST 76 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 146 bp overlap
ChIP 22Rv1_CST_Crispr GSE123618.FOXA1.22Rv1_CST_Crispr 146 bp overlap
ChIP 22Rv1_CST_Crispr-36 GSE123618.FOXA1.22Rv1_CST_Crispr-36 146 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 146 bp overlap
ChIP 22Rv1_CST_Crispr_WT3 GSE123618.FOXA1.22Rv1_CST_Crispr_WT3 116 bp overlap
ChIP 22Rv1_i176m_CST GSE123618.FOXA1.22Rv1_i176m_CST 53 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 146 bp overlap
ChIP LAPC-4_TFS_p358fs-V5 GSE123618.FOXA1.LAPC-4_TFS_p358fs-V5 146 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 143 bp overlap
ChIP LNCaP-C4-2B_DHT GSE40050.FOXA1.LNCaP-C4-2B_DHT 146 bp overlap
ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 77 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 146 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 81 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 146 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 99 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 146 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 146 bp overlap
ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 146 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 106 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 81 bp overlap
ChIP T-47D_shRNF2_8h GSE137579.FOXA1.T-47D_shRNF2_8h 70 bp overlap
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 136 bp overlap
ChIP breast-cancer_ENOB-2849 GSE128018.FOXA1.breast-cancer_ENOB-2849 146 bp overlap
FOXA2 7 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 146 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 146 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 146 bp overlap
ChIP DE DE-FOXA2-1 146 bp overlap
ChIP DE DE-FOXA2-2 146 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 146 bp overlap
ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 126 bp overlap
FOXH1 1 dataset
Motif DE_24h DE_24h-FOXH1_MA0479.2 8 bp overlap
FOXL2 1 dataset
ChIP HGrC1_C134W-TGF GSE138496.FOXL2.HGrC1_C134W-TGF 130 bp overlap
FOXO1::ELF1 1 dataset
Motif DE_24h DE_24h-FOXO1ELF1_MA1953.2 13 bp overlap
GATA4 1 dataset
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 146 bp overlap
GATA6 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 146 bp overlap
HDAC1 2 datasets
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 139 bp overlap
ChIP NB4 GSE126720.HDAC1.NB4 63 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B GSE145834.HIF1A.BEAS-2B 146 bp overlap
HMGXB4 1 dataset
ChIP Hep-G2 ENCSR174GOO.HMGXB4.Hep-G2 117 bp overlap
INO80 1 dataset
ChIP Huh-7 GSE97411.INO80.Huh-7 106 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 116 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 87 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 54 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 71 bp overlap
KAT7 1 dataset
ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 146 bp overlap
KDM1A 2 datasets
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 115 bp overlap
ChIP K562 ENCFF128TYE 122 bp overlap
KMT2A 2 datasets
ChIP HEK293T_N-term_shCtrl GSE90762.KMT2A.HEK293T_N-term_shCtrl 146 bp overlap
ChIP THP-1 GSE83671.KMT2A.THP-1 146 bp overlap
L3MBTL2 2 datasets
ChIP HEK293T ENCSR862PNL.L3MBTL2.HEK293T 146 bp overlap
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 146 bp overlap
MAX 1 dataset
ChIP K562 ENCFF524IJO 146 bp overlap
MEN1 2 datasets
ChIP MCF-7_E2 GSE85317.MEN1.MCF-7_E2 146 bp overlap
ChIP PC-3 GSE132827.MEN1.PC-3 146 bp overlap
MGA 4 datasets
ChIP A-549_MGA-OE GSE112188.MGA.A-549_MGA-OE 146 bp overlap
Motif DE_24h DE_24h-MGA_MA0801.1 8 bp overlap
ChIP K-562 ENCSR710WLO.MGA.K-562 146 bp overlap
ChIP K562 ENCFF140CEX 146 bp overlap
MGA::EVX1 1 dataset
Motif DE_24h DE_24h-MGAEVX1_MA1960.2 11 bp overlap
MXD4 1 dataset
ChIP Hep-G2 ENCSR441KFW.MXD4.Hep-G2 127 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 146 bp overlap
NR1H2 2 datasets
ChIP K562 ENCFF386VZB 146 bp overlap
ChIP K562 ENCFF386VZB 146 bp overlap
ONECUT1 2 datasets
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 74 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 134 bp overlap
ONECUT2 1 dataset
ChIP A-549 GSE102599.ONECUT2.A-549 146 bp overlap
OVOL1 1 dataset
ChIP MCF-7 ENCFF537GWI 96 bp overlap
PHIP 2 datasets
ChIP HCT-116_MLL4-SET-KO_ab833 GSE101646.PHIP.HCT-116_MLL4-SET-KO_ab833 146 bp overlap
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 146 bp overlap
PRDM1 1 dataset
ChIP A549 ENCFF012KDW 115 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 146 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 146 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 146 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 146 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 146 bp overlap
SMARCA4 6 datasets
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 121 bp overlap
ChIP A-549_AG15684 GSE132290.SMARCA4.A-549_AG15684 65 bp overlap
ChIP A-549_AG15685 GSE132290.SMARCA4.A-549_AG15685 85 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 95 bp overlap
ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 66 bp overlap
ChIP TTC-1240_SMARCB1-FL GSE124903.SMARCA4.TTC-1240_SMARCB1-FL 146 bp overlap
STAG1 1 dataset
ChIP MCF-7_E2_SHCTCF ERP000209.STAG1.MCF-7_E2_SHCTCF 101 bp overlap
STAT5B 2 datasets
ChIP CD8_H9 GSE64713.STAT5B.CD8_H9 72 bp overlap
ChIP CD8_IL2 GSE64713.STAT5B.CD8_IL2 93 bp overlap
SUPT5H 2 datasets
ChIP HCT-116_DMSO GSE138548.SUPT5H.HCT-116_DMSO 133 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 146 bp overlap
Spi1 1 dataset
Motif DE_24h DE_24h-Spi1_MA0080.7 13 bp overlap
TAF1 1 dataset
ChIP Hep-G2 ENCSR918OKK.TAF1.Hep-G2 59 bp overlap
TBR1 1 dataset
Motif DE_24h DE_24h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_24h DE_24h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_24h DE_24h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_24h DE_24h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
Motif DE_24h DE_24h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_24h DE_24h-TBX20_MA0689.1 11 bp overlap
TBX21 4 datasets
ChIP CD4_Th1 GSE62482.TBX21.CD4_Th1 141 bp overlap
Motif DE_24h DE_24h-TBX21_MA0690.3 10 bp overlap
ChIP GM12878 ENCSR739IHN.TBX21.GM12878 132 bp overlap
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 135 bp overlap
TBX3 1 dataset
Motif DE_24h DE_24h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_24h DE_24h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_24h DE_24h-TBX5_MA0807.1 8 bp overlap
Tbx6 1 dataset
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
ZBTB20 1 dataset
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 146 bp overlap
ZFP64 1 dataset
ChIP Hep-G2 ENCSR487CPI.ZFP64.Hep-G2 106 bp overlap
ZFY 1 dataset
ChIP Hep-G2 ENCSR949OEV.ZFY.Hep-G2 146 bp overlap
ZHX3 1 dataset
ChIP HepG2 ENCFF631YWI 146 bp overlap
ZNF2 1 dataset
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 101 bp overlap
ZNF382 1 dataset
Motif DE_24h DE_24h-ZNF382_MA1594.1 24 bp overlap
ZNF395 1 dataset
ChIP K562 ENCFF464EIT 136 bp overlap
ZNF629 1 dataset
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 88 bp overlap
ZNF660 1 dataset
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 146 bp overlap
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