chr3 : 124,748,731 124,749,138
407 bp 78 TFs 0 linked genes
This 407 bp open chromatin element has no linked target genes and is bound by 78 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:124,743,731 – 124,754,138
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
AFF4 4 datasets
ChIP HeLa GSE40632.AFF4.HeLa 175 bp overlap
ChIP HeLa_DOX GSE40632.AFF4.HeLa_DOX 225 bp overlap
ChIP HeLa_DOX_EGF GSE40632.AFF4.HeLa_DOX_EGF 62 bp overlap
ChIP HeLa_DOX_EGF GSE40632.AFF4.HeLa_DOX_EGF 149 bp overlap
AGO2 2 datasets
ChIP HepG2 ENCFF773YDL 365 bp overlap
ChIP HepG2 ENCFF773YDL 407 bp overlap
AHR 1 dataset
ChIP MCF-7_DMSO_1d GSE90550.AHR.MCF-7_DMSO_1d 84 bp overlap
AR 20 datasets
ChIP 22Rv1_R1881 GSE80742.AR.22Rv1_R1881 173 bp overlap
ChIP 22Rv1_siARFL_R1881 GSE80742.AR.22Rv1_siARFL_R1881 141 bp overlap
ChIP DU145_FOXA1_ARQ6540X GSE47987.AR.DU145_FOXA1_ARQ6540X 185 bp overlap
ChIP LNCaP_DHT GSE125245.AR.LNCaP_DHT 76 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 133 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 140 bp overlap
ChIP LNCaP_Talen_DHT GSE89938.AR.LNCaP_Talen_DHT 127 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 237 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 386 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 95 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 96 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 102 bp overlap
ChIP VCaP_SH1_R1881 GSE79128.AR.VCaP_SH1_R1881 128 bp overlap
ChIP VCaP_SH2_R1881 GSE79128.AR.VCaP_SH2_R1881 165 bp overlap
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 307 bp overlap
ChIP breast_tumor_Male_26 GSE104399.AR.breast_tumor_Male_26 190 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.AR.primary-prostate-cancer_P2_DSG 173 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.AR.prostate-cancer_PDX_189-4 180 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 121 bp overlap
ChIP prostate_1730_T GSE130408.AR.prostate_1730_T 92 bp overlap
BCL11A 1 dataset
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 91 bp overlap
BCL3 3 datasets
ChIP A-549 ENCSR000BQH.BCL3.A-549 94 bp overlap
ChIP A-549 ENCSR000BQH.BCL3.A-549 272 bp overlap
ChIP GM12878 ENCSR000BNQ.BCL3.GM12878 213 bp overlap
BRD2 1 dataset
ChIP THP-1_iBET-BD2 GSE138084.BRD2.THP-1_iBET-BD2 187 bp overlap
BRD3 1 dataset
ChIP MV4-11_IBET151_50nM GSE120715.BRD3.MV4-11_IBET151_50nM 139 bp overlap
BRD4 3 datasets
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 400 bp overlap
ChIP MV4-11_SGC GSE71776.BRD4.MV4-11_SGC 173 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 271 bp overlap
BRF1 1 dataset
ChIP H9_Activin GSE94418.BRF1.H9_Activin 148 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 99 bp overlap
CDKN1B 2 datasets
ChIP MDA-MB-231 GSE112444.CDKN1B.MDA-MB-231 299 bp overlap
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 299 bp overlap
CSNK2A1 1 dataset
ChIP LNCaP_DHT GSE58607.CSNK2A1.LNCaP_DHT 190 bp overlap
CTCF 2 datasets
ChIP GSC23 GSE139416.CTCF.GSC23 314 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 115 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF262VBH 218 bp overlap
ChIP BLaER1 ENCFF335XTP 160 bp overlap
E2F8 1 dataset
ChIP K-562 ENCSR953DVM.E2F8.K-562 340 bp overlap
ELL2 1 dataset
ChIP HeLa GSE40632.ELL2.HeLa 244 bp overlap
EPAS1 1 dataset
ChIP 501-mel GSE95280.EPAS1.501-mel 348 bp overlap
ERG 1 dataset
ChIP SKNO-1 GSE23730.ERG.SKNO-1 150 bp overlap
ESR1 3 datasets
ChIP MCF-7_PaPE-1 GSE93510.ESR1.MCF-7_PaPE-1 340 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 347 bp overlap
ChIP breast-cancer_S440-2187 GSE128018.ESR1.breast-cancer_S440-2187 74 bp overlap
FLI1 1 dataset
ChIP SKNO-1 GSE23730.FLI1.SKNO-1 247 bp overlap
FOSL2 2 datasets
ChIP A-549 ENCSR448TVS.FOSL2.A-549 337 bp overlap
ChIP Hep-G2 ENCSR000BHP.FOSL2.Hep-G2 166 bp overlap
FOXA1 15 datasets
ChIP 22Rv1_CST GSE123618.FOXA1.22Rv1_CST 112 bp overlap
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 89 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 95 bp overlap
ChIP 22Rv1_r261g_CST GSE123618.FOXA1.22Rv1_r261g_CST 121 bp overlap
ChIP A-549 ENCSR000BPX.FOXA1.A-549 111 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 63 bp overlap
ChIP MCF-7_4OH-Tam GSE75201.FOXA1.MCF-7_4OH-Tam 99 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 138 bp overlap
ChIP breast-cancer_ENOB-2849 GSE128018.FOXA1.breast-cancer_ENOB-2849 231 bp overlap
ChIP breast-cancer_ENOB-2852 GSE128018.FOXA1.breast-cancer_ENOB-2852 286 bp overlap
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 81 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 185 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 188 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 122 bp overlap
ChIP prostate_2030_T GSE130408.FOXA1.prostate_2030_T 162 bp overlap
FOXA2 5 datasets
ChIP BJ1-hTERT_Mimo GSE92491.FOXA2.BJ1-hTERT_Mimo 176 bp overlap
ChIP DE DE-FOXA2-1 234 bp overlap
ChIP DE DE-FOXA2-2 202 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 114 bp overlap
ChIP PANC-1_HNF1B-OE GSE119930.FOXA2.PANC-1_HNF1B-OE 357 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-1 85 bp overlap
HDGF 1 dataset
ChIP K-562 ENCSR197ALX.HDGF.K-562 323 bp overlap
HNF1B 1 dataset
ChIP HepG2 ENCFF928THX 357 bp overlap
HNF4G 2 datasets
ChIP 22Rv1 GSE85558.HNF4G.22Rv1 135 bp overlap
ChIP 22Rv1_Dox GSE85558.HNF4G.22Rv1_Dox 126 bp overlap
HNRNPH1 2 datasets
ChIP Hep-G2 ENCSR066FXN.HNRNPH1.Hep-G2 218 bp overlap
ChIP Hep-G2 GSE120104.HNRNPH1.Hep-G2 243 bp overlap
IFNA1 2 datasets
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 407 bp overlap
ChIP Huh-7_NS5 GSE110511.IFNA1.Huh-7_NS5 391 bp overlap
ILF3 1 dataset
ChIP K-562 GSE103215.ILF3.K-562 216 bp overlap
JARID2 1 dataset
ChIP MRC-5_IPS25_MEG3 GSE48515.JARID2.MRC-5_IPS25_MEG3 214 bp overlap
JUN 1 dataset
ChIP MDA-MB-231 GSE112444.JUN.MDA-MB-231 293 bp overlap
JUND 1 dataset
ChIP A-549 ENCSR000BRF.JUND.A-549 145 bp overlap
MAF 1 dataset
ChIP CD4_TH2 GSE72266.MAF.CD4_TH2 115 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 165 bp overlap
MTA3 1 dataset
ChIP GM12878 ENCSR000BRH.MTA3.GM12878 407 bp overlap
MYBL2 2 datasets
ChIP A-673 GSE119971.MYBL2.A-673 407 bp overlap
ChIP MCF-10A_DOX GSE115787.MYBL2.MCF-10A_DOX 320 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 176 bp overlap
ChIP SHEP-21N GSE80151.MYCN.SHEP-21N 104 bp overlap
MYNN 1 dataset
ChIP K-562 ENCSR737LTZ.MYNN.K-562 407 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_Bethyl275_G GSE118494.NCAPH2.IMR-90_Bethyl275_G 261 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 123 bp overlap
NR3C1 8 datasets
ChIP A-549 ENCSR000BHE.NR3C1.A-549 254 bp overlap
ChIP A-549 ENCSR000BHG.NR3C1.A-549 217 bp overlap
ChIP A-549 ENCSR000BJR.NR3C1.A-549 220 bp overlap
ChIP A-549 ENCSR000BHF.NR3C1.A-549 195 bp overlap
ChIP BEAS-2B_TNF_IA1 GSE125623.NR3C1.BEAS-2B_TNF_IA1 407 bp overlap
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 407 bp overlap
ChIP MDA-MB-361 GSE152203.NR3C1.MDA-MB-361 61 bp overlap
ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 74 bp overlap
ONECUT1 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 57 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 407 bp overlap
PARP1 1 dataset
ChIP MCF-10A GSE93038.PARP1.MCF-10A 61 bp overlap
PAX6 1 dataset
ChIP retina_pigment GSE60024.PAX6.retina_pigment 137 bp overlap
PGR 5 datasets
ChIP T-47D_PROG GSE68355.PGR.T-47D_PROG 160 bp overlap
ChIP T-47D_R5020 GSE68355.PGR.T-47D_R5020 159 bp overlap
ChIP T-47D_R5020-A1 GSE126859.PGR.T-47D_R5020-A1 144 bp overlap
ChIP T-47D_progesterone GSE132649.PGR.T-47D_progesterone 151 bp overlap
ChIP T-47D_progesterone_siCtrl GSE132649.PGR.T-47D_progesterone_siCtrl 146 bp overlap
PITX1 1 dataset
ChIP HepG2 ENCFF468QTQ 178 bp overlap
POLR2A 13 datasets
ChIP GM12878 ENCFF521FXC 240 bp overlap
ChIP GM12891 ENCFF127ICP 249 bp overlap
ChIP GM12891 ENCFF379FCI 161 bp overlap
ChIP H1 ENCFF566JSR 246 bp overlap
ChIP H1 ENCFF833NJP 375 bp overlap
ChIP HL-60 ENCFF321XKE 327 bp overlap
ChIP HeLa-S3 ENCFF224LWS 407 bp overlap
ChIP HepG2 ENCFF252NAR 407 bp overlap
ChIP HepG2 ENCFF718XAJ 377 bp overlap
ChIP SK-N-MC ENCFF088IVG 407 bp overlap
ChIP endothelial cell of umbilical vein ENCFF467WJF 407 bp overlap
ChIP spleen ENCFF446ZGT 119 bp overlap
ChIP spleen ENCFF446ZGT 407 bp overlap
POLR2B 1 dataset
ChIP K562 ENCFF513ENO 392 bp overlap
POLR2G 2 datasets
ChIP HepG2 ENCFF241AEG 407 bp overlap
ChIP HepG2 ENCFF508UTS 407 bp overlap
PPARG 1 dataset
ChIP HUVEC-C_PPARG_HYPO GSE50144.PPARG.HUVEC-C_PPARG_HYPO 123 bp overlap
RBM22 4 datasets
ChIP HepG2 ENCFF292RVQ 203 bp overlap
ChIP HepG2 ENCFF292RVQ 235 bp overlap
ChIP HepG2 ENCFF561IAJ 204 bp overlap
ChIP HepG2 ENCFF561IAJ 184 bp overlap
RPA2_phospho 3 datasets
ChIP HeLa GSE108172.RPA2_phospho.HeLa 407 bp overlap
ChIP HeLa_shASF GSE108172.RPA2_phospho.HeLa_shASF 157 bp overlap
ChIP HeLa_shTOP1 GSE108172.RPA2_phospho.HeLa_shTOP1 402 bp overlap
SALL2 1 dataset
ChIP HEK293 GSE145940.SALL2.HEK293 198 bp overlap
SIRT6 1 dataset
ChIP K-562 ENCSR000AUB.SIRT6.K-562 250 bp overlap
SMAD3 7 datasets
ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 200 bp overlap
ChIP H69_4Veh GSE145250.SMAD3.H69_4Veh 89 bp overlap
ChIP H69_5TGF GSE145250.SMAD3.H69_5TGF 76 bp overlap
ChIP H69_5TGF GSE145250.SMAD3.H69_5TGF 146 bp overlap
ChIP H69_5Veh GSE145250.SMAD3.H69_5Veh 112 bp overlap
ChIP H69_5Veh GSE145250.SMAD3.H69_5Veh 150 bp overlap
ChIP SUM159PT GSE130364.SMAD3.SUM159PT 407 bp overlap
SMARCA4 1 dataset
ChIP A-549_AG15689 GSE132290.SMARCA4.A-549_AG15689 154 bp overlap
SMARCB1 2 datasets
ChIP HeLa-S3 ENCSR000EDK.SMARCB1.HeLa-S3 191 bp overlap
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 338 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 188 bp overlap
SMC3 2 datasets
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 54 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 241 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 234 bp overlap
SSRP1 2 datasets
ChIP HepG2 ENCFF540BLL 407 bp overlap
ChIP HepG2 ENCFF540BLL 300 bp overlap
SUPT5H 10 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 256 bp overlap
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 95 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 103 bp overlap
ChIP HCT-116_DMSO GSE138548.SUPT5H.HCT-116_DMSO 407 bp overlap
ChIP HCT-116_DMSO_pThr806 GSE138548.SUPT5H.HCT-116_DMSO_pThr806 225 bp overlap
ChIP HCT-116_Nut3 GSE138548.SUPT5H.HCT-116_Nut3 406 bp overlap
ChIP HEK293_PNUTS GSE134198.SUPT5H.HEK293_PNUTS 307 bp overlap
ChIP HeLa GSE125534.SUPT5H.HeLa 407 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 139 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 197 bp overlap
SUPT6H 1 dataset
ChIP HCT-116 GSE130509.SUPT6H.HCT-116 300 bp overlap
TBL1X 1 dataset
ChIP HEK293T GSE35197.TBL1X.HEK293T 192 bp overlap
U2AF1 2 datasets
ChIP Hep-G2 GSE120104.U2AF1.Hep-G2 227 bp overlap
ChIP Hep-G2 ENCSR868JLS.U2AF1.Hep-G2 186 bp overlap
YY1 1 dataset
ChIP Huh-7 GSE97411.YY1.Huh-7 301 bp overlap
ZBTB6 3 datasets
ChIP HEK293 ENCFF881ECZ 289 bp overlap
ChIP HEK293 GSE76494.ZBTB6.HEK293 359 bp overlap
ChIP HEK293 ENCSR619OUC.ZBTB6.HEK293 296 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 367 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T4 GSE39263.ZNF143.FLP143HA_T4 189 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 103 bp overlap