chr3 : 107,237,025 107,237,235
210 bp 74 TFs 2 linked genes
This 210 bp open chromatin element is linked to LINC00882 and DUBR and is bound by 74 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
LINC00882 3.4 kb Proximal Proximity
DUBR 3.4 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:107,232,025 – 107,242,235
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
74 transcription factors
Source
Cell type
AR 8 datasets
ChIP DU145 GSE47987.AR.DU145 198 bp overlap
ChIP DU145_ARQ6540X GSE47987.AR.DU145_ARQ6540X 196 bp overlap
ChIP LNCaP_1F5_SIFOXA1 GSE30623.AR.LNCaP_1F5_SIFOXA1 206 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 143 bp overlap
ChIP MDA-MB-453_R1881_SICTR GSE70161.AR.MDA-MB-453_R1881_SICTR 210 bp overlap
ChIP MDA-MB-453_R1881_SIPIAS1 GSE70161.AR.MDA-MB-453_R1881_SIPIAS1 210 bp overlap
ChIP PC-3_R1881 GSE54110.AR.PC-3_R1881 210 bp overlap
ChIP VCaP_R1881_30M GSE84432.AR.VCaP_R1881_30M 137 bp overlap
ARID1A 4 datasets
ChIP 12Z GSE129781.ARID1A.12Z 210 bp overlap
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 210 bp overlap
ChIP MCF-7_DCDT GSE123284.ARID1A.MCF-7_DCDT 153 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 210 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNMM GSE100148.ATRX.metastatic-neuroblastoma_SKNMM 210 bp overlap
BCL11A 1 dataset
ChIP HUDEP-2_90min GSE104676.BCL11A.HUDEP-2_90min 98 bp overlap
BRD2 4 datasets
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 210 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 130 bp overlap
ChIP SUM159PT_DMSO GSE116879.BRD2.SUM159PT_DMSO 167 bp overlap
ChIP SUM159PT_MGSK2801 GSE116879.BRD2.SUM159PT_MGSK2801 88 bp overlap
BRD4 12 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 210 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 83 bp overlap
ChIP SUM159PT_100nMtrametinib_1h GSE87418.BRD4.SUM159PT_100nMtrametinib_1h 205 bp overlap
ChIP SUM159PT_100nMtrametinib_4h GSE87418.BRD4.SUM159PT_100nMtrametinib_4h 210 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 209 bp overlap
ChIP SUM159PT_100nMtrametinib_8h GSE87418.BRD4.SUM159PT_100nMtrametinib_8h 210 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 167 bp overlap
ChIP SUM159PT_DMSO GSE131097.BRD4.SUM159PT_DMSO 210 bp overlap
ChIP SUM159PT_DMSO_72h GSE87418.BRD4.SUM159PT_DMSO_72h 201 bp overlap
ChIP SUM159PT_DMSO_8h GSE87418.BRD4.SUM159PT_DMSO_8h 210 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 210 bp overlap
ChIP SUM159PT_scramble GSE131097.BRD4.SUM159PT_scramble 210 bp overlap
CDK7 1 dataset
ChIP SK-MEL-147 GSE45984.CDK7.SK-MEL-147 175 bp overlap
CEBPB 1 dataset
ChIP HeLa-S3 ENCFF722WEG 156 bp overlap
CHD4 1 dataset
ChIP 501-mel GSE134848.CHD4.501-mel 65 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 157 bp overlap
CTCF 3 datasets
ChIP HT-1080 GSE135580.CTCF.HT-1080 171 bp overlap
ChIP Panc1 ENCFF056JQX 166 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 54 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF798NMV 109 bp overlap
EP300 2 datasets
ChIP HeLa-S3 ENCSR000ECV.EP300.HeLa-S3 91 bp overlap
ChIP PC-3 GSE147455.EP300.PC-3 138 bp overlap
ESR1 24 datasets
ChIP MCF-7 GSE68355.ESR1.MCF-7 200 bp overlap
ChIP MCF-7 GSE119702.ESR1.MCF-7 200 bp overlap
ChIP MCF-7 GSE103023.ESR1.MCF-7 158 bp overlap
ChIP MCF-7_E2 GSE119702.ESR1.MCF-7_E2 200 bp overlap
ChIP MCF-7_E2+4OHT GSE119702.ESR1.MCF-7_E2+4OHT 210 bp overlap
ChIP MCF-7_E2+4OHT_SRC-3 GSE119702.ESR1.MCF-7_E2+4OHT_SRC-3 210 bp overlap
ChIP MCF-7_E2_SRC-3 GSE119702.ESR1.MCF-7_E2_SRC-3 210 bp overlap
ChIP MCF-7_IL1b_45m GSE67295.ESR1.MCF-7_IL1b_45m 154 bp overlap
ChIP MCF-7_LY2_ETOH GSE54592.ESR1.MCF-7_LY2_ETOH 169 bp overlap
ChIP MCF-7_OHT GSE119702.ESR1.MCF-7_OHT 210 bp overlap
ChIP MCF-7_PROG GSE68355.ESR1.MCF-7_PROG 210 bp overlap
ChIP MCF-7_R5020 GSE68355.ESR1.MCF-7_R5020 210 bp overlap
ChIP MCF-7_SRC3 GSE119702.ESR1.MCF-7_SRC3 210 bp overlap
ChIP MCF-7_SRC3_OHT GSE119702.ESR1.MCF-7_SRC3_OHT 210 bp overlap
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.ESR1.MCF-7_parental_4-hydroxytamoxifen 203 bp overlap
ChIP MCF-7_shFbxo GSE119702.ESR1.MCF-7_shFbxo 210 bp overlap
ChIP MCF-7_shFbxo_E2 GSE119702.ESR1.MCF-7_shFbxo_E2 210 bp overlap
ChIP MCF-7_shFbxo_E2_4OHT GSE119702.ESR1.MCF-7_shFbxo_E2_4OHT 182 bp overlap
ChIP MCF-7_shFbxo_E2_4OHT_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_E2_4OHT_SRC-3 210 bp overlap
ChIP MCF-7_shFbxo_E2_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_E2_SRC-3 210 bp overlap
ChIP MCF-7_shFbxo_OHT GSE119702.ESR1.MCF-7_shFbxo_OHT 182 bp overlap
ChIP MCF-7_shFbxo_OHT_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_OHT_SRC-3 210 bp overlap
ChIP MCF-7_shFbxo_SRC-3 GSE119702.ESR1.MCF-7_shFbxo_SRC-3 210 bp overlap
ChIP MCF-7_shTEAD4 GSE125594.ESR1.MCF-7_shTEAD4 180 bp overlap
ESRRA 1 dataset
ChIP BT-474 GSE81651.ESRRA.BT-474 55 bp overlap
FOS 1 dataset
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 97 bp overlap
FOSL1 1 dataset
ChIP BT-549 GSE112961.FOSL1.BT-549 138 bp overlap
FOXA1 3 datasets
ChIP MCF-7 GSE81714.FOXA1.MCF-7 189 bp overlap
ChIP MCF-7_JC4691 GSE126004.FOXA1.MCF-7_JC4691 94 bp overlap
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 62 bp overlap
GABPA 1 dataset
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 133 bp overlap
GATA1 10 datasets
ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 55 bp overlap
ChIP CD34_ERYTH_BIO GSE29194.GATA1.CD34_ERYTH_BIO 145 bp overlap
ChIP CD34_ERYTH_BMP GSE29194.GATA1.CD34_ERYTH_BMP 147 bp overlap
ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 157 bp overlap
ChIP K-562 GSE107726.GATA1.K-562 210 bp overlap
ChIP K-562_dCas9-LSD1 GSE132212.GATA1.K-562_dCas9-LSD1 159 bp overlap
ChIP K-562_enCRISPRi-LK GSE132212.GATA1.K-562_enCRISPRi-LK 204 bp overlap
ChIP erythroblast ENCFF867JAR 210 bp overlap
ChIP erythroblast ENCSR000EXP.GATA1.erythroblast 210 bp overlap
ChIP erythroid_Don001 GSE137982.GATA1.erythroid_Don001 200 bp overlap
GATA2 5 datasets
ChIP SH-SY5Y ENCFF485YIB 210 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 210 bp overlap
ChIP SK-N-SH ENCFF764OZD 78 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 161 bp overlap
ChIP TF1 GSE73207.GATA2.TF1 210 bp overlap
GATA3 7 datasets
ChIP Kelly GSE65664.GATA3.Kelly 210 bp overlap
ChIP MCF-7 GSE122847.GATA3.MCF-7 203 bp overlap
ChIP MCF-7 GSE133072.GATA3.MCF-7 210 bp overlap
ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 164 bp overlap
ChIP MCF-7_E2 GSE81510.GATA3.MCF-7_E2 210 bp overlap
ChIP MCF-7_E2_Dex GSE81510.GATA3.MCF-7_E2_Dex 210 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 161 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 210 bp overlap
ChIP DE DE-GATA4-2 210 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 174 bp overlap
ChIP foregut GSE117136.GATA4.foregut 210 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 210 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 207 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 210 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 210 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 210 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 167 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 210 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 210 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 194 bp overlap
ChIP foregut GSE117136.GATA6.foregut 210 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 210 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 188 bp overlap
GTF3C2 2 datasets
ChIP HeLa-S3 ENCFF144RTV 113 bp overlap
ChIP HeLa-S3 ENCSR000DNY.GTF3C2.HeLa-S3 56 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 180 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 210 bp overlap
HNF4G 2 datasets
ChIP 22Rv1 GSE85558.HNF4G.22Rv1 175 bp overlap
ChIP 22Rv1_Dox GSE85558.HNF4G.22Rv1_Dox 105 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 177 bp overlap
JUND 2 datasets
ChIP HeLa-S3 ENCFF642OHL 131 bp overlap
ChIP HeLa-S3 ENCSR000EDH.JUND.HeLa-S3 86 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 210 bp overlap
KMT2A 1 dataset
ChIP HEK293T_C-term_C104 GSE90762.KMT2A.HEK293T_C-term_C104 99 bp overlap
MED1 1 dataset
ChIP SUM159PT_DMSO_24h GSE87418.MED1.SUM159PT_DMSO_24h 210 bp overlap
MYC 1 dataset
ChIP HeLa-S3 ENCSR000EZD.MYC.HeLa-S3 119 bp overlap
MYCN 1 dataset
ChIP SH-EP_pRRL-MYCN GSE111905.MYCN.SH-EP_pRRL-MYCN 79 bp overlap
NELFE 2 datasets
ChIP HeLa GSE125534.NELFE.HeLa 210 bp overlap
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 147 bp overlap
NR3C1 9 datasets
ChIP A-549 ENCSR000BHF.NR3C1.A-549 119 bp overlap
ChIP HeLa-B2_P65KD_TA_TNFA GSE24518.NR3C1.HeLa-B2_P65KD_TA_TNFA 151 bp overlap
ChIP HeLa-B2_TA GSE24518.NR3C1.HeLa-B2_TA 195 bp overlap
ChIP HeLa-B2_TA_TNFA GSE24518.NR3C1.HeLa-B2_TA_TNFA 210 bp overlap
ChIP MCF-10A_EGF_DEX_20min GSE102355.NR3C1.MCF-10A_EGF_DEX_20min 205 bp overlap
ChIP MCF-7_E2_Dex GSE81510.NR3C1.MCF-7_E2_Dex 210 bp overlap
ChIP MCF-7_ICI_Dex GSE81510.NR3C1.MCF-7_ICI_Dex 210 bp overlap
ChIP MDA-MB-453 GSE152203.NR3C1.MDA-MB-453 210 bp overlap
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 210 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 201 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 193 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 210 bp overlap
PGR 3 datasets
ChIP AB32 GSE31129.PGR.AB32 210 bp overlap
ChIP MCF-7_PROG GSE68355.PGR.MCF-7_PROG 210 bp overlap
ChIP MCF-7_R5020 GSE68355.PGR.MCF-7_R5020 210 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 210 bp overlap
PHOX2B 1 dataset
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 72 bp overlap
PRDM1 1 dataset
ChIP HeLa-S3 ENCFF893HDJ 153 bp overlap
RAD21 2 datasets
ChIP HeLa-S3 ENCFF775CHI 140 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 170 bp overlap
RCOR1 2 datasets
ChIP HeLa GSE45441.RCOR1.HeLa 194 bp overlap
ChIP HeLa-S3 ENCFF471KYI 152 bp overlap
RELA 4 datasets
ChIP HeLa-B2_TA_TNFA GSE24518.RELA.HeLa-B2_TA_TNFA 210 bp overlap
ChIP HeLa-B2_TNFA GSE24518.RELA.HeLa-B2_TNFA 88 bp overlap
ChIP MCF-7_IL1b_45m GSE67295.RELA.MCF-7_IL1b_45m 210 bp overlap
ChIP MCF-7_TNFa_45m GSE67295.RELA.MCF-7_TNFa_45m 210 bp overlap
SMAD3 1 dataset
ChIP SUM159PT GSE130364.SMAD3.SUM159PT 210 bp overlap
SMARCA4 1 dataset
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 210 bp overlap
SMARCB1 2 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 150 bp overlap
ChIP MCF-7_estrogen GSE123284.SMARCB1.MCF-7_estrogen 182 bp overlap
SMC3 2 datasets
ChIP HeLa-Kyoto_PDS5-depleted GSE102884.SMC3.HeLa-Kyoto_PDS5-depleted 210 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 176 bp overlap
STAT3 4 datasets
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 107 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 210 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 86 bp overlap
ChIP SUM159PT GSE152203.STAT3.SUM159PT 210 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 146 bp overlap
TAL1 3 datasets
ChIP CD34 GSE52924.TAL1.CD34 152 bp overlap
ChIP K-562_enCRISPRi-KL GSE132212.TAL1.K-562_enCRISPRi-KL 101 bp overlap
ChIP ProEs GSE59087.TAL1.ProEs 144 bp overlap
TBX2 1 dataset
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 169 bp overlap
TCF7L2 5 datasets
ChIP HeLa-S3 ENCFF673QAB 210 bp overlap
ChIP HeLa-S3 ENCSR000EVE.TCF7L2.HeLa-S3 210 bp overlap
ChIP MCF-7 ENCFF219LIX 210 bp overlap
ChIP MCF-7 ENCSR000EWT.TCF7L2.MCF-7 210 bp overlap
ChIP MDA-MB-453 GSE45201.TCF7L2.MDA-MB-453 210 bp overlap
TEAD4 2 datasets
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 140 bp overlap
ChIP MCF-7_Veh GSE125594.TEAD4.MCF-7_Veh 64 bp overlap
TFAP2C 1 dataset
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 128 bp overlap
TRPS1 1 dataset
ChIP MCF-7 GSE133072.TRPS1.MCF-7 185 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 108 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 108 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 210 bp overlap
ZFP36 4 datasets
ChIP A-549 ENCSR294JWV.ZFP36.A-549 96 bp overlap
ChIP A549 ENCFF505LUC 112 bp overlap
ChIP HeLa-S3 ENCSR184MFH.ZFP36.HeLa-S3 113 bp overlap
ChIP K-562 ENCSR776CYN.ZFP36.K-562 114 bp overlap
ZHX1 1 dataset
ChIP HeLa-S3 ENCSR855WKQ.ZHX1.HeLa-S3 210 bp overlap
ZNF18 3 datasets
ChIP HEK293 ENCFF066NGR 210 bp overlap
ChIP HEK293 ENCSR977HTH.ZNF18.HEK293 210 bp overlap
ChIP HEK293 GSE76494.ZNF18.HEK293 194 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 210 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 210 bp overlap
ZNF436 1 dataset
ChIP HEK293 GSE76494.ZNF436.HEK293 84 bp overlap
ZNF623 2 datasets
ChIP HEK293 ENCFF505YHP 210 bp overlap
ChIP HEK293 ENCSR022IZK.ZNF623.HEK293 189 bp overlap
ZNF629 3 datasets
ChIP HEK293 ENCFF096ELQ 210 bp overlap
ChIP HEK293 ENCFF096ELQ 114 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 157 bp overlap
ZNF750 1 dataset
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 210 bp overlap
ZNF92 1 dataset
ChIP retina_pigment GSE60024.ZNF92.retina_pigment 99 bp overlap