chr3 : 62,941,101 – 62,941,300
199 bp 65 TFs 1 linked gene
This 199 bp open chromatin element is linked to LINC00698 and is bound by 65 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC00698 9.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:62,936,101 – 62,946,300
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 107 bp overlap
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 199 bp overlap
ATF3 4 datasets
ChIP K-562 ENCSR632DCH.ATF3.K-562 111 bp overlap
ChIP K-562 ENCSR028UIU.ATF3.K-562 199 bp overlap
ChIP K562 ENCFF604FPV 131 bp overlap
ChIP K562 ENCFF921JQW 56 bp overlap
ATF4 3 datasets
ChIP HepG2 ENCFF903ADR 120 bp overlap
ChIP K-562 ENCSR145TSJ.ATF4.K-562 199 bp overlap
ChIP K562 ENCFF674KTF 119 bp overlap
ATF7 1 dataset
ChIP K-562 ENCSR972ZBV.ATF7.K-562 148 bp overlap
BACH1 4 datasets
ChIP AsPC-1 GSE124406.BACH1.AsPC-1 142 bp overlap
ChIP H1 ENCFF282VDB 55 bp overlap
ChIP K-562 ENCSR740NPG.BACH1.K-562 199 bp overlap
ChIP WA01 ENCSR000EBQ.BACH1.WA01 65 bp overlap
BRD2 5 datasets
ChIP MDA-MB-231_BAZ2AsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA 199 bp overlap
ChIP MDA-MB-231_BAZ2BsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2BsiRNA 199 bp overlap
ChIP MDA-MB-231_NTsiRNA GSE116879.BRD2.MDA-MB-231_NTsiRNA 199 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 199 bp overlap
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 161 bp overlap
BRD4 10 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 199 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 141 bp overlap
ChIP K-562_DMSO GSE99178.BRD4.K-562_DMSO 199 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 56 bp overlap
ChIP MM1-S_JQ1_5NM GSE42355.BRD4.MM1-S_JQ1_5NM 69 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 199 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 172 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 126 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 199 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 199 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_Trametinib GSE126143.CASZ1.rhabdomyosarcoma_Trametinib 142 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 199 bp overlap
CEBPG 3 datasets
ChIP K-562 ENCSR620VIC.CEBPG.K-562 199 bp overlap
ChIP K-562 ENCSR490LWA.CEBPG.K-562 61 bp overlap
ChIP K562 ENCFF783ADE 199 bp overlap
CRY1 2 datasets
ChIP U2OS GSE130602.CRY1.U2OS 145 bp overlap
ChIP U2OS_DMSO GSE130506.CRY1.U2OS_DMSO 145 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF031ISE 114 bp overlap
ChIP BLaER1 ENCFF093OYK 140 bp overlap
ChIP BLaER1 ENCFF896HSY 122 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 158 bp overlap
EP300 1 dataset
ChIP HeLa-S3 ENCSR000ECV.EP300.HeLa-S3 187 bp overlap
ESR1 4 datasets
ChIP MCF-7 GSE68356.ESR1.MCF-7 199 bp overlap
ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 199 bp overlap
ChIP MCF-7_estradiol-DHT_45min GSE99626.ESR1.MCF-7_estradiol-DHT_45min 161 bp overlap
ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 199 bp overlap
ESR1_Y537S 1 dataset
ChIP MCF-7_E2 GSE94493.ESR1_Y537S.MCF-7_E2 167 bp overlap
EZH2 1 dataset
ChIP THP-1 GSE135024.EZH2.THP-1 199 bp overlap
FOSL1 3 datasets
ChIP K-562 ENCSR239ZLZ.FOSL1.K-562 131 bp overlap
ChIP K562 ENCFF455MKD 199 bp overlap
ChIP K562 ENCFF455MKD 199 bp overlap
FOSL2 1 dataset
ChIP HepG2 ENCFF548CXY 60 bp overlap
FOXO1-PAX3 1 dataset
ChIP RH4_DMSO-6H GSE116344.FOXO1-PAX3.RH4_DMSO-6H 126 bp overlap
GABPB1 1 dataset
ChIP WTC11 ENCFF166QKI 90 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 199 bp overlap
HIF1A 3 datasets
ChIP U2OS_DMOG GSE85096.HIF1A.U2OS_DMOG 157 bp overlap
ChIP U2OS_DMSO GSE85096.HIF1A.U2OS_DMSO 199 bp overlap
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 99 bp overlap
IKZF1 3 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 199 bp overlap
ChIP K562 ENCFF348IBL 199 bp overlap
ChIP K562 ENCFF348IBL 75 bp overlap
ILK 1 dataset
ChIP K-562 ENCSR648INT.ILK.K-562 131 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 199 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 142 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 199 bp overlap
KLF6 1 dataset
ChIP K-562 ENCSR297CGF.KLF6.K-562 166 bp overlap
L3MBTL2 1 dataset
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 184 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 199 bp overlap
MAFF 2 datasets
ChIP HeLa-S3 ENCFF783SBT 78 bp overlap
ChIP K562 ENCFF071YKK 66 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 199 bp overlap
MAFK 7 datasets
ChIP H1 ENCFF854XWE 67 bp overlap
ChIP HepG2 ENCFF767LDG 71 bp overlap
ChIP K-562 ENCSR000EGX.MAFK.K-562 58 bp overlap
ChIP K562 ENCFF380WHM 76 bp overlap
ChIP MCF-7 ENCFF558JLG 75 bp overlap
ChIP MCF-7 ENCSR555PBN.MAFK.MCF-7 180 bp overlap
ChIP WA01 ENCSR000EBS.MAFK.WA01 74 bp overlap
MAX 2 datasets
ChIP WTC11 ENCFF223QFY 199 bp overlap
ChIP melanocyte GSE115845.MAX.melanocyte 139 bp overlap
MED1 1 dataset
ChIP U-87MG GSE36354.MED1.U-87MG 199 bp overlap
MSX2 1 dataset
ChIP MCF-7 ENCFF179YRV 199 bp overlap
NCOA2 1 dataset
ChIP MCF-7 ERP000901.NCOA2.MCF-7 112 bp overlap
NCOA3 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA3.MCF-7_E2 179 bp overlap
NFE2 1 dataset
ChIP K-562 ENCSR552YGL.NFE2.K-562 156 bp overlap
NFE2L2 1 dataset
ChIP A-375_DMSO GSE57431.NFE2L2.A-375_DMSO 147 bp overlap
NFRKB 1 dataset
ChIP K-562 ENCSR657EOF.NFRKB.K-562 199 bp overlap
NFXL1 1 dataset
ChIP GM12878 ENCSR746XEG.NFXL1.GM12878 199 bp overlap
NR3C1 3 datasets
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 51 bp overlap
ChIP SUM159PT GSE152203.NR3C1.SUM159PT 58 bp overlap
ChIP SUP-B15_DEX GSE107584.NR3C1.SUP-B15_DEX 118 bp overlap
NRIP1 2 datasets
ChIP MCF-7 ERP005838.NRIP1.MCF-7 199 bp overlap
ChIP MCF-7_E2 ERP005838.NRIP1.MCF-7_E2 166 bp overlap
PGR 1 dataset
ChIP AB32 GSE31129.PGR.AB32 141 bp overlap
POU5F1 1 dataset
ChIP hiPSC GSE56567.POU5F1.hiPSC 54 bp overlap
RAD21 2 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 88 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 136 bp overlap
REST 2 datasets
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 199 bp overlap
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 131 bp overlap
RFX1 1 dataset
ChIP K-562 ENCSR968GIB.RFX1.K-562 165 bp overlap
RNF2 1 dataset
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 199 bp overlap
RUVBL2 2 datasets
ChIP U2OS GSE130602.RUVBL2.U2OS 199 bp overlap
ChIP U2OS_cordycepin GSE130507.RUVBL2.U2OS_cordycepin 199 bp overlap
SETDB1 2 datasets
ChIP HEK293 ENCSR348AGV.SETDB1.HEK293 173 bp overlap
ChIP U2OS ENCSR000EYD.SETDB1.U2OS 173 bp overlap
SMAD3 1 dataset
ChIP SUM159PT GSE130364.SMAD3.SUM159PT 160 bp overlap
SMARCA4 7 datasets
ChIP 501-mel_SHMITF GSE61965.SMARCA4.501-mel_SHMITF 199 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 199 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 199 bp overlap
ChIP K-562 ENCSR587OQL.SMARCA4.K-562 190 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 94 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 199 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 199 bp overlap
SMARCB1 1 dataset
ChIP MCF-7_DCDT GSE123284.SMARCB1.MCF-7_DCDT 199 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS_shSSX GSE108025.SMARCC1.Aska-SS_shSSX 76 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 199 bp overlap
TEAD4 1 dataset
ChIP SK-MEL-147 GSE94488.TEAD4.SK-MEL-147 148 bp overlap
ZBTB11 1 dataset
ChIP K562 ENCFF694AXU 199 bp overlap
ZFX 3 datasets
ChIP MCF-7 ENCFF009NAJ 199 bp overlap
ChIP MCF-7 ENCFF009NAJ 199 bp overlap
ChIP MCF-7 ENCSR435OQD.ZFX.MCF-7 199 bp overlap
ZNF143 3 datasets
Motif DE_12h DE_12h-ZNF143_MA0088.2 16 bp overlap
ChIP MCF-7 GSE76454.ZNF143.MCF-7 199 bp overlap
ChIP MCF-7_E2 GSE76454.ZNF143.MCF-7_E2 123 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 82 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 199 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 199 bp overlap
ZNF76 1 dataset
Motif DE_12h DE_12h-ZNF76_MA1716.2 17 bp overlap
ZNF766 1 dataset
ChIP K562 ENCFF348LDO 199 bp overlap
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