chr3 : 28,117,573 – 28,118,410
837 bp 107 TFs 0 linked genes
This 837 bp open chromatin element has no linked target genes and is bound by 107 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr3:28,112,573 – 28,123,410
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
107 transcription factors
Source
Cell type
ATF2 1 dataset
Motif DE_12h DE_12h-ATF2_MA1632.2 10 bp overlap
BCL11A 1 dataset
ChIP WA01 ENCSR000BIP.BCL11A.WA01 112 bp overlap
BCOR 2 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 184 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 243 bp overlap
BHLHE22 2 datasets
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
Motif ES_0h ES_0h-BHLHE22_MA1635.2 6 bp overlap
CDK6 1 dataset
ChIP KB_IL GSE52469.CDK6.KB_IL 103 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 591 bp overlap
ChIP H1 ENCFF126NLU 389 bp overlap
Crx 2 datasets
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
Motif ES_0h ES_0h-Crx_MA0467.3 6 bp overlap
DMRTA2 1 dataset
Motif DE_12h DE_12h-DMRTA2_MA1478.2 6 bp overlap
E2F8 1 dataset
ChIP GM12878 ENCSR793HVL.E2F8.GM12878 144 bp overlap
EP300 1 dataset
ChIP WA01 ENCSR000BKK.EP300.WA01 125 bp overlap
ERF::HOXB13 2 datasets
Motif DE_12h DE_12h-ERFHOXB13_MA1937.2 13 bp overlap
Motif ES_0h ES_0h-ERFHOXB13_MA1937.2 13 bp overlap
ETS1 2 datasets
ChIP cardiomyocyte_D14 GSE129986.ETS1.cardiomyocyte_D14 180 bp overlap
ChIP hESC ENCSR534VHI.ETS1.hESC 125 bp overlap
ETV5::FOXO1 2 datasets
Motif DE_12h DE_12h-ETV5FOXO1_MA1947.2 10 bp overlap
Motif ES_0h ES_0h-ETV5FOXO1_MA1947.2 10 bp overlap
EWSR1-FLI1 2 datasets
Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap
Elf5 2 datasets
Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap
Motif ES_0h ES_0h-Elf5_MA0136.4 8 bp overlap
Erg 1 dataset
Motif DE_12h DE_12h-Erg_MA0474.4 10 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
Foxq1 1 dataset
Motif ES_0h ES_0h-Foxq1_MA0040.2 10 bp overlap
GABPA 1 dataset
Motif DE_12h DE_12h-GABPA_MA0062.4 10 bp overlap
GSC 2 datasets
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
Motif ES_0h ES_0h-GSC_MA0648.2 6 bp overlap
GSC2 2 datasets
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
Motif ES_0h ES_0h-GSC2_MA0891.2 6 bp overlap
Gfi1B 2 datasets
Motif DE_12h DE_12h-Gfi1B_MA0483.2 10 bp overlap
Motif ES_0h ES_0h-Gfi1B_MA0483.2 10 bp overlap
HAND2 2 datasets
Motif DE_12h DE_12h-HAND2_MA1638.2 6 bp overlap
Motif ES_0h ES_0h-HAND2_MA1638.2 6 bp overlap
HOXC13 2 datasets
Motif DE_12h DE_12h-HOXC13_MA0907.2 9 bp overlap
Motif ES_0h ES_0h-HOXC13_MA0907.2 9 bp overlap
Hand1::Tcf3 2 datasets
Motif DE_12h DE_12h-Hand1Tcf3_MA0092.2 9 bp overlap
Motif ES_0h ES_0h-Hand1Tcf3_MA0092.2 9 bp overlap
Hic1 2 datasets
Motif DE_12h DE_12h-Hic1_MA0739.2 8 bp overlap
Motif ES_0h ES_0h-Hic1_MA0739.2 8 bp overlap
Hmga1 2 datasets
Motif DE_12h DE_12h-Hmga1_MA2124.1 8 bp overlap
Motif ES_0h ES_0h-Hmga1_MA2124.1 8 bp overlap
Hnf1A 2 datasets
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
IKZF1 1 dataset
ChIP GM12878 ENCFF753XDO 431 bp overlap
IKZF2 3 datasets
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
ChIP GM12878 ENCSR680UQE.IKZF2.GM12878 245 bp overlap
IRF3 3 datasets
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
Motif DE_12h DE_12h-IRF3_MA1418.2 17 bp overlap
Motif ES_0h ES_0h-IRF3_MA1418.2 17 bp overlap
Irf1 1 dataset
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
JUN 4 datasets
Motif DE_12h DE_12h-JUN_MA0488.2 10 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 275 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 329 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 444 bp overlap
JUND 1 dataset
Motif DE_12h DE_12h-JUND_MA0492.2 11 bp overlap
MAF::NFE2 1 dataset
Motif DE_12h DE_12h-MAFNFE2_MA0501.2 11 bp overlap
MAX 1 dataset
ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap
MLLT1 2 datasets
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 244 bp overlap
ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 141 bp overlap
MSANTD3 2 datasets
Motif DE_12h DE_12h-MSANTD3_MA1523.2 7 bp overlap
Motif ES_0h ES_0h-MSANTD3_MA1523.2 7 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCFF065NZG 299 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 206 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 422 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 299 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 167 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 402 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 394 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 432 bp overlap
ChIP hESC GSE18292.NANOG.hESC 105 bp overlap
NCOR1 1 dataset
ChIP LS180_125 GSE39277.NCOR1.LS180_125 101 bp overlap
NEUROG2 1 dataset
ChIP MRC-5_N_05DPT GSE75910.NEUROG2.MRC-5_N_05DPT 174 bp overlap
NIPBL 2 datasets
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 252 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 257 bp overlap
NKX2-2 2 datasets
Motif DE_12h DE_12h-NKX2-2_MA1645.2 8 bp overlap
Motif ES_0h ES_0h-NKX2-2_MA1645.2 8 bp overlap
NR2F6 1 dataset
Motif DE_12h DE_12h-NR2F6_MA1539.1 15 bp overlap
NUTM1 2 datasets
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 221 bp overlap
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 211 bp overlap
Neurod2 2 datasets
Motif DE_12h DE_12h-Neurod2_MA1993.2 6 bp overlap
Motif ES_0h ES_0h-Neurod2_MA1993.2 6 bp overlap
Nfe2l2 1 dataset
Motif DE_12h DE_12h-Nfe2l2_MA0150.3 11 bp overlap
OTX1 2 datasets
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
Motif ES_0h ES_0h-OTX1_MA0711.2 6 bp overlap
Olig2 2 datasets
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
Motif ES_0h ES_0h-Olig2_MA1997.2 6 bp overlap
PITX1 2 datasets
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
Motif ES_0h ES_0h-PITX1_MA0682.3 6 bp overlap
PITX3 2 datasets
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
Motif ES_0h ES_0h-PITX3_MA0714.2 6 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F3 2 datasets
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
POU5F1 17 datasets
ChIP BG03 GSE21614.POU5F1.BG03 159 bp overlap
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 115 bp overlap
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 299 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 443 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 304 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 368 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 220 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 275 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 322 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 231 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 431 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 396 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 232 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 173 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Pparg::Rxra 2 datasets
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
Motif ES_0h ES_0h-PpargRxra_MA0065.3 13 bp overlap
Ptf1A 2 datasets
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
Motif ES_0h ES_0h-Ptf1A_MA1619.2 8 bp overlap
RELB 2 datasets
ChIP GM12878 ENCFF217ADF 83 bp overlap
ChIP GM12878 ENCSR387QUV.RELB.GM12878 627 bp overlap
RHOXF1 2 datasets
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
Motif ES_0h ES_0h-RHOXF1_MA0719.2 6 bp overlap
RREB1 1 dataset
Motif DE_12h DE_12h-RREB1_MA0073.2 19 bp overlap
RUNX3 1 dataset
Motif DE_12h DE_12h-RUNX3_MA0684.3 8 bp overlap
Rhox11 3 datasets
Motif DE_12h DE_12h-Rhox11_MA0629.2 9 bp overlap
Motif DE_12h DE_12h-Rhox11_MA0629.2 9 bp overlap
Motif ES_0h ES_0h-Rhox11_MA0629.2 9 bp overlap
SIX1 2 datasets
Motif DE_12h DE_12h-SIX1_MA1118.2 9 bp overlap
Motif ES_0h ES_0h-SIX1_MA1118.2 9 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE21614.SMAD3.BG03 202 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 302 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 294 bp overlap
SMARCA5 1 dataset
ChIP GM12878 ENCSR706YUH.SMARCA5.GM12878 190 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 306 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 429 bp overlap
SMARCC1 3 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 195 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 185 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 289 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 106 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 270 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 314 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 222 bp overlap
SP5 3 datasets
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SPI1 1 dataset
ChIP THP-1 GSE128834.SPI1.THP-1 145 bp overlap
SPIB 6 datasets
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
Motif ES_0h ES_0h-SPIB_MA0081.3 13 bp overlap
Motif ES_0h ES_0h-SPIB_MA0081.3 13 bp overlap
STAT1::STAT2 2 datasets
Motif DE_12h DE_12h-STAT1STAT2_MA0517.2 13 bp overlap
Motif ES_0h ES_0h-STAT1STAT2_MA0517.2 13 bp overlap
Six4 2 datasets
Motif DE_12h DE_12h-Six4_MA2001.2 7 bp overlap
Motif ES_0h ES_0h-Six4_MA2001.2 7 bp overlap
Spi1 4 datasets
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Motif DE_12h DE_12h-Spi1_MA0080.7 13 bp overlap
Motif ES_0h ES_0h-Spi1_MA0080.7 13 bp overlap
Stat6 2 datasets
Motif DE_12h DE_12h-Stat6_MA0520.2 10 bp overlap
Motif ES_0h ES_0h-Stat6_MA0520.2 10 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 131 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TEAD4 3 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 272 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
ChIP hESC GSE99202.TEAD4.hESC 214 bp overlap
TFAP4 2 datasets
Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap
Motif ES_0h ES_0h-TFAP4_MA0691.1 10 bp overlap
THRA 2 datasets
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
Motif ES_0h ES_0h-THRA_MA1969.2 18 bp overlap
TRIM22 2 datasets
ChIP GM12878 ENCFF919OMX 63 bp overlap
ChIP GM12878 ENCSR835XKS.TRIM22.GM12878 89 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 201 bp overlap
TWIST1 2 datasets
Motif DE_12h DE_12h-TWIST1_MA1123.3 8 bp overlap
Motif ES_0h ES_0h-TWIST1_MA1123.3 8 bp overlap
Tcf12 2 datasets
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Motif ES_0h ES_0h-Tcf12_MA0521.3 6 bp overlap
Twist2 2 datasets
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
Motif ES_0h ES_0h-Twist2_MA0633.3 6 bp overlap
VEZF1 1 dataset
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 123 bp overlap
ZBTB12 2 datasets
Motif DE_12h DE_12h-ZBTB12_MA1649.2 7 bp overlap
Motif ES_0h ES_0h-ZBTB12_MA1649.2 7 bp overlap
ZKSCAN5 4 datasets
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
Motif DE_12h DE_12h-ZKSCAN5_MA1652.2 9 bp overlap
Motif ES_0h ES_0h-ZKSCAN5_MA1652.2 9 bp overlap
Motif ES_0h ES_0h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF189 1 dataset
Motif DE_12h DE_12h-ZNF189_MA1725.2 9 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF214 2 datasets
Motif DE_12h DE_12h-ZNF214_MA1975.2 13 bp overlap
Motif ES_0h ES_0h-ZNF214_MA1975.2 13 bp overlap
ZNF263 3 datasets
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
Motif DE_12h DE_12h-ZNF263_MA0528.3 7 bp overlap
Motif ES_0h ES_0h-ZNF263_MA0528.3 7 bp overlap
ZNF317 2 datasets
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
Motif ES_0h ES_0h-ZNF317_MA1593.2 8 bp overlap
ZNF341 1 dataset
Motif DE_12h DE_12h-ZNF341_MA1655.2 8 bp overlap
ZNF35 1 dataset
Motif ES_0h ES_0h-ZNF35_MA2333.1 7 bp overlap
ZNF354C 1 dataset
Motif ES_0h ES_0h-ZNF354C_MA0130.1 6 bp overlap
ZNF398 1 dataset
ChIP BG01V GSE133630.ZNF398.BG01V 197 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 223 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 201 bp overlap
ZNF667 1 dataset
Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap
ZNF684 2 datasets
Motif DE_12h DE_12h-ZNF684_MA1600.2 14 bp overlap
Motif ES_0h ES_0h-ZNF684_MA1600.2 14 bp overlap
ZNF766 1 dataset
Motif ES_0h ES_0h-ZNF766_MA2098.1 9 bp overlap
ZNF85 1 dataset
Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap
ZSCAN4 2 datasets
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Motif ES_0h ES_0h-ZSCAN4_MA1155.1 15 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
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