chr3 : 20,974,087 – 20,975,113

1,026 bp 99 TFs 0 linked genes

This 1.0 kb open chromatin element has no linked target genes and is bound by 99 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

99 transcription factors

AR 1 dataset

ChIP LNCaP GSE63202.AR.LNCaP 220 bp overlap

Arid3a 1 dataset

Motif DE_36h DE_36h-Arid3a_MA0151.1 6 bp overlap

BRD2 1 dataset

ChIP K-562 GSE140325.BRD2.K-562 91 bp overlap

BRD3 1 dataset

ChIP K-562_IBET151_50nM GSE120715.BRD3.K-562_IBET151_50nM 136 bp overlap

BRD4 2 datasets

ChIP HEK293_Ctrl GSE129407.BRD4.HEK293_Ctrl 76 bp overlap

ChIP hESC GSE33281.BRD4.hESC 61 bp overlap

CHD2 1 dataset

ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 223 bp overlap

CRY1 1 dataset

ChIP U2OS GSE44236.CRY1.U2OS 201 bp overlap

CTCF 3 datasets

Motif DE_36h DE_36h-CTCF_MA1930.2 33 bp overlap

ChIP SK-N-SH ENCFF731NJX 251 bp overlap

ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 184 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF274GAT 331 bp overlap

EBF3_P177L 1 dataset

ChIP SK-N-SH GSE90682.EBF3_P177L.SK-N-SH 223 bp overlap

EOMES 1 dataset

ChIP hESC GSE26097.EOMES.hESC 132 bp overlap

EP300 2 datasets

ChIP SK-N-SH ENCFF829RWA 377 bp overlap

ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 255 bp overlap

ERF::FOXI1 2 datasets

Motif DE_36h DE_36h-ERFFOXI1_MA1935.2 10 bp overlap

Motif DE_60h DE_60h-ERFFOXI1_MA1935.2 10 bp overlap

ESR1 4 datasets

ChIP MCF-7 GSE68356.ESR1.MCF-7 201 bp overlap

ChIP MCF-7_Veh_OA GSE93510.ESR1.MCF-7_Veh_OA 454 bp overlap

ChIP MCF-7_ethanol_MKL1D200 GSE107476.ESR1.MCF-7_ethanol_MKL1D200 254 bp overlap

ChIP MDA-MB-134-VI_ESTROGEN GSE51022.ESR1.MDA-MB-134-VI_ESTROGEN 329 bp overlap

ETV1 2 datasets

Motif DE_36h DE_36h-ETV1_MA0761.3 9 bp overlap

Motif DE_60h DE_60h-ETV1_MA0761.3 9 bp overlap

ETV2::FOXI1 2 datasets

Motif DE_36h DE_36h-ETV2FOXI1_MA1942.2 11 bp overlap

Motif DE_60h DE_60h-ETV2FOXI1_MA1942.2 11 bp overlap

EZH1 1 dataset

ChIP ProEs_SHCTR GSE59087.EZH1.ProEs_SHCTR 144 bp overlap

EZH2 2 datasets

ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 71 bp overlap

ChIP SU-DHL-5 GSE45982.EZH2.SU-DHL-5 121 bp overlap

Erg 2 datasets

Motif DE_36h DE_36h-Erg_MA0474.4 10 bp overlap

Motif DE_60h DE_60h-Erg_MA0474.4 10 bp overlap

FOXA1 1 dataset

ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 428 bp overlap

FOXA2 3 datasets

ChIP DE DE-FOXA2-1 439 bp overlap

ChIP DE DE-FOXA2-2 533 bp overlap

Motif DE_36h DE_36h-FOXA2_MA0047.4 8 bp overlap

FOXD2 1 dataset

Motif DE_36h DE_36h-FOXD2_MA0847.4 11 bp overlap

FOXD3 1 dataset

Motif DE_36h DE_36h-FOXD3_MA0041.3 14 bp overlap

FOXE1 1 dataset

Motif DE_36h DE_36h-FOXE1_MA1487.3 12 bp overlap

FOXG1 1 dataset

Motif DE_36h DE_36h-FOXG1_MA0613.1 8 bp overlap

FOXJ2::ELF1 2 datasets

Motif DE_36h DE_36h-FOXJ2ELF1_MA1952.2 11 bp overlap

Motif DE_60h DE_60h-FOXJ2ELF1_MA1952.2 11 bp overlap

FOXK1 1 dataset

Motif DE_36h DE_36h-FOXK1_MA0852.3 7 bp overlap

FOXK2 1 dataset

Motif DE_36h DE_36h-FOXK2_MA1103.3 7 bp overlap

FOXL1 1 dataset

Motif DE_36h DE_36h-FOXL1_MA0033.2 7 bp overlap

FOXN3 1 dataset

Motif DE_36h DE_36h-FOXN3_MA1489.1 8 bp overlap

FOXO4 1 dataset

Motif DE_36h DE_36h-FOXO4_MA0848.1 7 bp overlap

FOXO6 1 dataset

Motif DE_36h DE_36h-FOXO6_MA0849.1 7 bp overlap

FOXP2 1 dataset

Motif DE_36h DE_36h-FOXP2_MA0593.2 9 bp overlap

FOXP3 1 dataset

Motif DE_36h DE_36h-FOXP3_MA0850.1 7 bp overlap

FOXS1 1 dataset

Motif DE_36h DE_36h-FOXS1_MA2118.1 8 bp overlap

Foxf1 1 dataset

Motif DE_36h DE_36h-Foxf1_MA1606.2 7 bp overlap

Foxj2 1 dataset

Motif DE_36h DE_36h-Foxj2_MA0614.1 8 bp overlap

Foxj3 1 dataset

Motif DE_36h DE_36h-Foxj3_MA0851.2 9 bp overlap

Foxo1 1 dataset

Motif DE_36h DE_36h-Foxo1_MA0480.3 7 bp overlap

Foxo3 1 dataset

Motif DE_36h DE_36h-Foxo3_MA0157.4 7 bp overlap

Foxq1 1 dataset

Motif DE_36h DE_36h-Foxq1_MA0040.2 10 bp overlap

GABPA 2 datasets

Motif DE_36h DE_36h-GABPA_MA0062.4 10 bp overlap

Motif DE_60h DE_60h-GABPA_MA0062.4 10 bp overlap

GATA1 1 dataset

ChIP HUDEP-2_30min GSE104676.GATA1.HUDEP-2_30min 77 bp overlap

GATA2 7 datasets

ChIP K-562 ENCSR000DKA.GATA2.K-562 577 bp overlap

ChIP K-562 ENCSR000EWG.GATA2.K-562 227 bp overlap

ChIP K562 ENCFF830LLA 577 bp overlap

ChIP SH-SY5Y ENCFF485YIB 141 bp overlap

ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 429 bp overlap

ChIP SK-N-SH ENCFF764OZD 417 bp overlap

ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 305 bp overlap

GATA3 5 datasets

ChIP BE2C GSE65664.GATA3.BE2C 221 bp overlap

ChIP NGP GSE65664.GATA3.NGP 174 bp overlap

ChIP SH-SY5Y ENCFF475HYF 481 bp overlap

ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 388 bp overlap

ChIP SK-N-SH ENCFF040SSB 365 bp overlap

GATA4 3 datasets

ChIP DE DE-GATA4-1 616 bp overlap

ChIP DE DE-GATA4-2 580 bp overlap

ChIP foregut GSE117136.GATA4.foregut 284 bp overlap

GATA6 10 datasets

ChIP DE DE-GATA6-1 335 bp overlap

ChIP DE DE-GATA6-2 543 bp overlap

ChIP DE_D1 S09-DE-d1-GATA6-exp1 763 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 492 bp overlap

ChIP DE_D1 S41-DE-d1-GATA6-exp2 623 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 519 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 787 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 816 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 383 bp overlap

ChIP foregut GSE117136.GATA6.foregut 308 bp overlap

GRHL2 1 dataset

ChIP LNCaP GSE80256.GRHL2.LNCaP 188 bp overlap

HAND2 1 dataset

ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 238 bp overlap

HDAC3 1 dataset

ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 193 bp overlap

Hic1 1 dataset

Motif DE_36h DE_36h-Hic1_MA0739.2 8 bp overlap

Hoxa13 1 dataset

Motif DE_36h DE_36h-Hoxa13_MA0650.4 8 bp overlap

IKZF1 2 datasets

Motif DE_36h DE_36h-IKZF1_MA1508.2 8 bp overlap

Motif DE_60h DE_60h-IKZF1_MA1508.2 8 bp overlap

IKZF2 2 datasets

Motif DE_36h DE_36h-IKZF2_MA2326.1 6 bp overlap

Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap

Ikzf3 2 datasets

Motif DE_36h DE_36h-Ikzf3_MA1992.2 9 bp overlap

Motif DE_60h DE_60h-Ikzf3_MA1992.2 9 bp overlap

Irf1 1 dataset

Motif DE_36h DE_36h-Irf1_MA0050.4 11 bp overlap

JUN 1 dataset

ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 414 bp overlap

KDM1A 1 dataset

ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 250 bp overlap

MAX 2 datasets

ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 314 bp overlap

ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 252 bp overlap

MED26 1 dataset

ChIP HEK293T GSE121024.MED26.HEK293T 202 bp overlap

MEIS1 2 datasets

Motif DE_36h DE_36h-MEIS1_MA0498.3 5 bp overlap

Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap

MEIS2 1 dataset

ChIP K-562 ENCSR851BNE.MEIS2.K-562 243 bp overlap

MGA 2 datasets

Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap

Motif DE_60h DE_60h-MGA_MA0801.1 8 bp overlap

MXI1 1 dataset

Motif DE_36h DE_36h-MXI1_MA1108.3 6 bp overlap

MYC 3 datasets

ChIP CD34 GSE85488.MYC.CD34 97 bp overlap

ChIP NCI-H128 GSE41105.MYC.NCI-H128 197 bp overlap

ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 217 bp overlap

MYCN 2 datasets

ChIP LA-N-5 GSE138295.MYCN.LA-N-5 312 bp overlap

ChIP NB-1643 GSE94782.MYCN.NB-1643 275 bp overlap

NCOA2 1 dataset

ChIP MCF-7 ERP000901.NCOA2.MCF-7 175 bp overlap

PAX3-FOXO1 1 dataset

ChIP RH4 GSE140115.PAX3-FOXO1.RH4 389 bp overlap

PBX3 2 datasets

Motif DE_36h DE_36h-PBX3_MA1114.2 11 bp overlap

Motif DE_60h DE_60h-PBX3_MA1114.2 11 bp overlap

PITX3 1 dataset

ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 559 bp overlap

RAD21 3 datasets

ChIP SK-N-SH ENCFF747MAS 251 bp overlap

ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 299 bp overlap

ChIP SK-N-SH GSE76815.RAD21.SK-N-SH 179 bp overlap

RCOR1 2 datasets

ChIP SK-N-SH ENCFF518EXB 365 bp overlap

ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 348 bp overlap

RUNX1 1 dataset

ChIP CD34_ADULT GSE70660.RUNX1.CD34_ADULT 113 bp overlap

RUNX1T1 1 dataset

ChIP Kasumi-1 GSE102697.RUNX1T1.Kasumi-1 171 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 334 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 299 bp overlap

SMARCA4 1 dataset

ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 196 bp overlap

SMARCC1 1 dataset

ChIP DE_D1 S15-DE-d1-BAF155-exp1 382 bp overlap

SNAI2 1 dataset

ChIP SMS-CTR_T48 GSE137168.SNAI2.SMS-CTR_T48 319 bp overlap

SOX17_M 1 dataset

ChIP DE_D2 DED2-SOX17-M_Batch_II 216 bp overlap

SPIB 1 dataset

ChIP OCI-Ly3_SHCTR GSE56857.SPIB.OCI-Ly3_SHCTR 203 bp overlap

STAT1_pS727 1 dataset

ChIP SET-2 GSE100566.STAT1_pS727.SET-2 287 bp overlap

STAT5A 1 dataset

ChIP MV4-11 GSE64862.STAT5A.MV4-11 143 bp overlap

Six3 1 dataset

Motif DE_36h DE_36h-Six3_MA0631.2 11 bp overlap

Stat4 2 datasets

Motif DE_36h DE_36h-Stat4_MA0518.2 10 bp overlap

Motif DE_60h DE_60h-Stat4_MA0518.2 10 bp overlap

TBX1 2 datasets

Motif DE_36h DE_36h-TBX1_MA0805.1 8 bp overlap

Motif DE_60h DE_60h-TBX1_MA0805.1 8 bp overlap

TBX15 2 datasets

Motif DE_36h DE_36h-TBX15_MA0803.1 8 bp overlap

Motif DE_60h DE_60h-TBX15_MA0803.1 8 bp overlap

TBX5 2 datasets

Motif DE_36h DE_36h-TBX5_MA0807.1 8 bp overlap

Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap

TCF4 1 dataset

ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 221 bp overlap

ZNF143 1 dataset

ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 233 bp overlap

ZNF16 1 dataset

Motif DE_36h DE_36h-ZNF16_MA1654.2 21 bp overlap

ZNF175 2 datasets

Motif DE_36h DE_36h-ZNF175_MA2332.1 9 bp overlap

Motif DE_60h DE_60h-ZNF175_MA2332.1 9 bp overlap

ZNF213 2 datasets

Motif DE_36h DE_36h-ZNF213_MA2121.1 12 bp overlap

Motif DE_60h DE_60h-ZNF213_MA2121.1 12 bp overlap

ZNF331 1 dataset

Motif DE_36h DE_36h-ZNF331_MA1726.2 10 bp overlap

ZNF512 1 dataset

ChIP K562 ENCFF601EMZ 72 bp overlap

ZNF574 1 dataset

Motif DE_36h DE_36h-ZNF574_MA1982.2 14 bp overlap

ZNF582 1 dataset

Motif DE_36h DE_36h-ZNF582_MA1983.2 19 bp overlap

ZNF680 2 datasets

Motif DE_36h DE_36h-ZNF680_MA1729.2 11 bp overlap

Motif DE_60h DE_60h-ZNF680_MA1729.2 11 bp overlap

ZSCAN16 2 datasets

Motif DE_36h DE_36h-ZSCAN16_MA2100.1 18 bp overlap

Motif DE_60h DE_60h-ZSCAN16_MA2100.1 18 bp overlap

Zfp809 1 dataset

Motif DE_36h DE_36h-Zfp809_MA2125.1 9 bp overlap