chr1 : 52,554,397 – 52,555,330
933 bp 85 TFs 2 linked genes
This 933 bp open chromatin element is linked to ENSG00000272371 and TUT4 and is bound by 85 transcription factors.
Linked Genes
2 genes
Distance
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ENSG00000272371 at TSS At TSS Proximity
TUT4 1.3 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:52,549,397 – 52,560,330
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
85 transcription factors
Source
Cell type
AR 7 datasets
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 290 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 288 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 379 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 335 bp overlap
ChIP prostate-cancer_PDX_81 GSE130408.AR.prostate-cancer_PDX_81 80 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.AR.prostate-cancer_PDX_92 64 bp overlap
ChIP prostate_P23_T GSE130408.AR.prostate_P23_T 397 bp overlap
ARID2 2 datasets
ChIP Hep-G2 GSE69566.ARID2.Hep-G2 91 bp overlap
ChIP HepG2 ENCFF317ZHO 237 bp overlap
ASH2L 1 dataset
ChIP Hep-G2 ENCSR508LMH.ASH2L.Hep-G2 232 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 373 bp overlap
BHLHE40 1 dataset
ChIP IMR-90 ENCSR957KYB.BHLHE40.IMR-90 160 bp overlap
BRD3 1 dataset
ChIP HEK293T GSE39579.BRD3.HEK293T 130 bp overlap
BRD4 3 datasets
ChIP SUM159PT_100nMtrametinib_24h GSE87418.BRD4.SUM159PT_100nMtrametinib_24h 331 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD4.THP-1_iBET-BD2 259 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 297 bp overlap
CDX2 1 dataset
ChIP Caco-2_DIFF GSE23436.CDX2.Caco-2_DIFF 236 bp overlap
CEBPA 2 datasets
ChIP HepG2 ENCFF175DFS 305 bp overlap
ChIP Kasumi-1_CEBPA-ER_E2 GSE102697.CEBPA.Kasumi-1_CEBPA-ER_E2 141 bp overlap
CREB1 1 dataset
ChIP HepG2 ENCFF576ERP 561 bp overlap
CREBBP 1 dataset
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 284 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF460KDD 162 bp overlap
EGR1 1 dataset
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 138 bp overlap
EHF 1 dataset
ChIP RWPE-1 GSE114241.EHF.RWPE-1 403 bp overlap
ELF4 1 dataset
ChIP HepG2 ENCFF752OAT 188 bp overlap
ERG 7 datasets
ChIP RWPE-1 GSE114241.ERG.RWPE-1 412 bp overlap
ChIP VCaP GSE83650.ERG.VCaP 308 bp overlap
ChIP VCaP GSE98809.ERG.VCaP 308 bp overlap
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 212 bp overlap
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 226 bp overlap
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 329 bp overlap
ChIP VCaP_shERG GSE110655.ERG.VCaP_shERG 378 bp overlap
ESRRB 1 dataset
Motif DE_72h DE_72h-ESRRB_MA0141.4 10 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 361 bp overlap
Esrrg 1 dataset
Motif DE_72h DE_72h-Esrrg_MA0643.2 9 bp overlap
FOXA1 7 datasets
ChIP HepG2 ENCFF207NVJ 281 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 442 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 418 bp overlap
ChIP primary-prostate-cancer_G2_DSG GSE114737.FOXA1.primary-prostate-cancer_G2_DSG 417 bp overlap
ChIP prostate-cancer_PDX_189-3 GSE130408.FOXA1.prostate-cancer_PDX_189-3 98 bp overlap
ChIP prostate_P23_T GSE130408.FOXA1.prostate_P23_T 425 bp overlap
ChIP prostate_P5_T GSE130408.FOXA1.prostate_P5_T 365 bp overlap
FOXA2 6 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 106 bp overlap
ChIP DE DE-FOXA2-1 877 bp overlap
ChIP DE DE-FOXA2-2 752 bp overlap
ChIP HepG2 ENCFF894AYY 381 bp overlap
ChIP KerCT GSE90454.FOXA2.KerCT 358 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 476 bp overlap
FOXP1 1 dataset
ChIP Hep-G2 ENCSR369YUK.FOXP1.Hep-G2 217 bp overlap
GABPA 2 datasets
ChIP VCaP GSE49091.GABPA.VCaP 231 bp overlap
ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 266 bp overlap
GATA1::TAL1 1 dataset
Motif DE_72h DE_72h-GATA1TAL1_MA0140.3 17 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 932 bp overlap
ChIP DE DE-GATA4-2 933 bp overlap
ChIP foregut GSE117136.GATA4.foregut 593 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 926 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 929 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 815 bp overlap
ChIP DE DE-GATA6-2 933 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 259 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 393 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 574 bp overlap
ChIP foregut GSE117136.GATA6.foregut 707 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 663 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 414 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 615 bp overlap
HIC2 1 dataset
Motif DE_72h DE_72h-HIC2_MA0738.2 6 bp overlap
HOXB13 8 datasets
ChIP prostate-cancer_PDX_92 GSE130408.HOXB13.prostate-cancer_PDX_92 266 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 155 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 290 bp overlap
ChIP prostate_P23 GSE130408.HOXB13.prostate_P23 177 bp overlap
ChIP prostate_P23_T GSE130408.HOXB13.prostate_P23_T 316 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 222 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 271 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 395 bp overlap
JUN 1 dataset
ChIP MCF10A-Er-Src_EtOH GSE115597.JUN.MCF10A-Er-Src_EtOH 259 bp overlap
JUNB 1 dataset
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 127 bp overlap
KDM1A 2 datasets
ChIP pancreatic-progenitor_GT GSE104840.KDM1A.pancreatic-progenitor_GT 410 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 387 bp overlap
KMT2A 2 datasets
ChIP Hep-G2 ENCSR692GFR.KMT2A.Hep-G2 124 bp overlap
ChIP blood_cord GSE83671.KMT2A.blood_cord 408 bp overlap
LIN54 2 datasets
ChIP HepG2 ENCFF662XDE 335 bp overlap
ChIP HepG2 ENCFF662XDE 541 bp overlap
MAF 1 dataset
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 190 bp overlap
MAX 2 datasets
ChIP Hep-G2 ENCSR168DYA.MAX.Hep-G2 173 bp overlap
ChIP SK-N-SH ENCSR000BVD.MAX.SK-N-SH 126 bp overlap
MED1 2 datasets
ChIP cardiomyocyte_5 GSE85628.MED1.cardiomyocyte_5 98 bp overlap
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 215 bp overlap
MTA2 1 dataset
ChIP K-562 ENCSR411UYA.MTA2.K-562 304 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 96 bp overlap
MYC 1 dataset
ChIP MCF-10A ENCSR000DOS.MYC.MCF-10A 266 bp overlap
MYCN 3 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 77 bp overlap
ChIP MYCN-3_low GSE83317.MYCN.MYCN-3_low 124 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 406 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 507 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 492 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 346 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 252 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 196 bp overlap
ONECUT1 3 datasets
ChIP Hep-G2 ENCSR956OSX.ONECUT1.Hep-G2 187 bp overlap
ChIP HepG2 ENCFF243FIR 341 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.ONECUT1.pancreatic-progenitor_PP1 477 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 265 bp overlap
PHIP 3 datasets
ChIP HCT-116_MLL1-KO__ab833 GSE101646.PHIP.HCT-116_MLL1-KO__ab833 53 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 72 bp overlap
ChIP HCT-116_ab833 GSE101646.PHIP.HCT-116_ab833 385 bp overlap
POLR2A 1 dataset
ChIP adrenal gland ENCFF843OBJ 127 bp overlap
PPARG 1 dataset
ChIP Hep-G2 ENCSR130VQL.PPARG.Hep-G2 125 bp overlap
PSIP1 2 datasets
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 141 bp overlap
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 184 bp overlap
Prdm14 1 dataset
Motif DE_72h DE_72h-Prdm14_MA1998.2 8 bp overlap
RAD21 1 dataset
ChIP neural ENCSR198ZYJ.RAD21.neural 259 bp overlap
RBAK 1 dataset
ChIP HEK293 ENCFF263SUK 177 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 339 bp overlap
RFX3 1 dataset
ChIP Hep-G2 ENCSR633OVO.RFX3.Hep-G2 196 bp overlap
RUNX1 2 datasets
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 348 bp overlap
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 334 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 274 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 417 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 318 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 473 bp overlap
SFPQ 1 dataset
ChIP HepG2 ENCFF145CDF 268 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 164 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 863 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 371 bp overlap
SMAD2_3 2 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 252 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 244 bp overlap
SMAD3 1 dataset
ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 146 bp overlap
SMAD4 1 dataset
ChIP Caco-2 GSE112946.SMAD4.Caco-2 200 bp overlap
SMAD7 1 dataset
ChIP HepG2 ENCFF850FXR 150 bp overlap
SMARCA2 1 dataset
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 264 bp overlap
SMARCA4 5 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 308 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 596 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 313 bp overlap
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 367 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 236 bp overlap
SMC3 1 dataset
ChIP neural ENCSR404BPV.SMC3.neural 437 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 536 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 563 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 248 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 347 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 186 bp overlap
SOX5 1 dataset
ChIP HepG2 ENCFF470KZD 405 bp overlap
SOX6 2 datasets
ChIP Hep-G2 ENCSR766TSU.SOX6.Hep-G2 290 bp overlap
ChIP HepG2 ENCFF767OCK 581 bp overlap
SP1 2 datasets
ChIP K562 ENCFF088XXV 111 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 130 bp overlap
STAT3 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 206 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 115 bp overlap
THAP1 1 dataset
Motif DE_72h DE_72h-THAP1_MA0597.3 8 bp overlap
THRB 1 dataset
ChIP Hep-G2 ENCSR430JGJ.THRB.Hep-G2 519 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF582MWI 671 bp overlap
ZBED4 1 dataset
ChIP HepG2 ENCFF157CDZ 120 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 468 bp overlap
ZNF20 1 dataset
ChIP HepG2 ENCFF518BKZ 137 bp overlap
ZNF366 1 dataset
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 567 bp overlap
ZNF680 1 dataset
Motif DE_72h DE_72h-ZNF680_MA1729.2 11 bp overlap
ZNF70 1 dataset
ChIP SK-N-SH ENCFF833ACX 317 bp overlap
ZSCAN29 1 dataset
ChIP HepG2 ENCFF212SBM 224 bp overlap
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