chr2 : 232,404,400 232,405,216
816 bp 92 TFs 5 linked genes
This 816 bp open chromatin element is linked to 5 target genes and is bound by 92 transcription factors.
Linked Genes
5 genes
Distance
Link type
Gene Expression Dist. to TSS Distance Link type
ALPG 1.6 kb Proximal Proximity
TIGD1 145.8 kb Distal Multiome
EIF4E2 145.9 kb Distal Multiome
EFHD1 201.3 kb Distal Multiome
GIGYF2 292.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:232,399,400 – 232,410,216
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
92 transcription factors
Source
Cell type
BCOR 1 dataset
ChIP K-562 ENCSR808AKZ.BCOR.K-562 225 bp overlap
BRD2 2 datasets
ChIP THP-1_DMSO GSE138084.BRD2.THP-1_DMSO 396 bp overlap
ChIP THP-1_iBET-BD2 GSE138084.BRD2.THP-1_iBET-BD2 374 bp overlap
CDK8 1 dataset
ChIP SET-2 GSE65138.CDK8.SET-2 207 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 286 bp overlap
EGR1 1 dataset
ChIP K-562 ENCSR000BNE.EGR1.K-562 126 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 425 bp overlap
EHMT2 1 dataset
ChIP K-562 ENCSR175EOM.EHMT2.K-562 260 bp overlap
ELF1 2 datasets
ChIP K-562 ENCSR000BMD.ELF1.K-562 207 bp overlap
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 166 bp overlap
ELF2 1 dataset
Motif DE_24h DE_24h-ELF2_MA1483.3 10 bp overlap
ELK1 1 dataset
Motif DE_24h DE_24h-ELK1_MA0028.3 9 bp overlap
ELK3 1 dataset
Motif DE_24h DE_24h-ELK3_MA0759.3 9 bp overlap
ELK4 1 dataset
Motif DE_24h DE_24h-ELK4_MA0076.3 9 bp overlap
EOMES 2 datasets
Motif DE_24h DE_24h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 334 bp overlap
ERF 1 dataset
Motif DE_24h DE_24h-ERF_MA0760.2 9 bp overlap
ETS1 2 datasets
Motif DE_24h DE_24h-ETS1_MA0098.4 9 bp overlap
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 303 bp overlap
ETS2 1 dataset
Motif DE_24h DE_24h-ETS2_MA1484.2 9 bp overlap
ETV2 1 dataset
Motif DE_24h DE_24h-ETV2_MA0762.2 9 bp overlap
ETV3 1 dataset
Motif DE_24h DE_24h-ETV3_MA0763.2 9 bp overlap
ETV4 1 dataset
Motif DE_24h DE_24h-ETV4_MA0764.4 9 bp overlap
ETV5 1 dataset
Motif DE_24h DE_24h-ETV5_MA0765.4 9 bp overlap
ETV6 1 dataset
Motif DE_24h DE_24h-ETV6_MA0645.2 9 bp overlap
ETV7 1 dataset
Motif DE_24h DE_24h-ETV7_MA1708.2 9 bp overlap
EZH2 1 dataset
ChIP SF8628 GSE94834.EZH2.SF8628 471 bp overlap
Elf5 2 datasets
Motif DE_24h DE_24h-Elf5_MA0136.4 8 bp overlap
Motif DE_48h DE_48h-Elf5_MA0136.4 8 bp overlap
FEV 1 dataset
Motif DE_24h DE_24h-FEV_MA0156.4 9 bp overlap
FLI1 1 dataset
Motif DE_24h DE_24h-FLI1_MA0475.3 9 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 556 bp overlap
ChIP DE DE-FOXA2-2 557 bp overlap
GABPA 2 datasets
ChIP HepG2 ENCFF467OEO 284 bp overlap
ChIP K562 ENCFF996TSW 315 bp overlap
GABPB1 3 datasets
ChIP K-562 ENCSR138YYY.GABPB1.K-562 490 bp overlap
ChIP K562 ENCFF015GDS 395 bp overlap
ChIP K562 ENCFF015GDS 401 bp overlap
GATA2 1 dataset
ChIP TF1 GSE73207.GATA2.TF1 200 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 667 bp overlap
ChIP DE DE-GATA4-2 733 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 693 bp overlap
ChIP DE DE-GATA6-2 639 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 625 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 651 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 750 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 612 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 615 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 714 bp overlap
IKZF2 2 datasets
Motif DE_24h DE_24h-IKZF2_MA2326.1 6 bp overlap
Motif DE_48h DE_48h-IKZF2_MA2326.1 6 bp overlap
INSM1 4 datasets
Motif DE_24h DE_24h-INSM1_MA0155.1 12 bp overlap
Motif DE_36h DE_36h-INSM1_MA0155.1 12 bp overlap
Motif DE_48h DE_48h-INSM1_MA0155.1 12 bp overlap
Motif DE_60h DE_60h-INSM1_MA0155.1 12 bp overlap
JUN 2 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 449 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 375 bp overlap
KLF1 1 dataset
Motif DE_24h DE_24h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_24h DE_24h-KLF10_MA1511.2 9 bp overlap
KLF11 1 dataset
Motif DE_24h DE_24h-KLF11_MA1512.2 10 bp overlap
KLF14 1 dataset
Motif DE_24h DE_24h-KLF14_MA0740.2 9 bp overlap
KLF2 1 dataset
Motif DE_24h DE_24h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif DE_24h DE_24h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_24h DE_24h-KLF5_MA0599.1 10 bp overlap
KLF9 5 datasets
Motif DE_24h DE_24h-KLF9_MA1107.3 11 bp overlap
Motif DE_24h DE_24h-KLF9_MA1107.3 11 bp overlap
Motif DE_36h DE_36h-KLF9_MA1107.3 11 bp overlap
Motif DE_48h DE_48h-KLF9_MA1107.3 11 bp overlap
Motif DE_60h DE_60h-KLF9_MA1107.3 11 bp overlap
Lef1 4 datasets
Motif DE_24h DE_24h-Lef1_MA0768.3 8 bp overlap
Motif DE_36h DE_36h-Lef1_MA0768.3 8 bp overlap
Motif DE_48h DE_48h-Lef1_MA0768.3 8 bp overlap
Motif DE_60h DE_60h-Lef1_MA0768.3 8 bp overlap
MED1 1 dataset
ChIP HCT-116_shLuc GSE121798.MED1.HCT-116_shLuc 274 bp overlap
MGA 1 dataset
Motif DE_24h DE_24h-MGA_MA0801.1 8 bp overlap
NCAPH2 1 dataset
ChIP IMR-90_Triptolide-5min GSE118494.NCAPH2.IMR-90_Triptolide-5min 309 bp overlap
NEUROD1 2 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 276 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 238 bp overlap
NR2C1 1 dataset
ChIP K-562 ENCSR742IDN.NR2C1.K-562 327 bp overlap
PAX5 2 datasets
ChIP NALM-6 GSE126300.PAX5.NALM-6 431 bp overlap
ChIP NALM-6 GSE126300.PAX5.NALM-6 239 bp overlap
PRDM10 3 datasets
ChIP HEK293 ENCFF145WQQ 284 bp overlap
ChIP K-562 ENCSR120MPG.PRDM10.K-562 317 bp overlap
ChIP K562 ENCFF740YLK 417 bp overlap
Plagl1 4 datasets
Motif DE_24h DE_24h-Plagl1_MA1615.2 8 bp overlap
Motif DE_36h DE_36h-Plagl1_MA1615.2 8 bp overlap
Motif DE_48h DE_48h-Plagl1_MA1615.2 8 bp overlap
Motif DE_60h DE_60h-Plagl1_MA1615.2 8 bp overlap
Prdm15 3 datasets
Motif DE_24h DE_24h-Prdm15_MA1616.2 11 bp overlap
Motif DE_36h DE_36h-Prdm15_MA1616.2 11 bp overlap
Motif DE_48h DE_48h-Prdm15_MA1616.2 11 bp overlap
RUNX1 2 datasets
ChIP NALM-6 GSE126300.RUNX1.NALM-6 360 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 198 bp overlap
Rfx6 1 dataset
Motif DE_24h DE_24h-Rfx6_MA1724.2 9 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 195 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 428 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 662 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 621 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 456 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 586 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 630 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 518 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 490 bp overlap
SMAD3 1 dataset
ChIP endoderm GSE29422.SMAD3.endoderm 156 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 713 bp overlap
SP5 3 datasets
Motif DE_24h DE_24h-SP5_MA1965.2 6 bp overlap
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
SP8 1 dataset
Motif DE_24h DE_24h-SP8_MA0747.2 11 bp overlap
SP9 1 dataset
Motif DE_24h DE_24h-SP9_MA1564.2 10 bp overlap
SPI1 19 datasets
ChIP CD34_FETAL GSE70660.SPI1.CD34_FETAL 301 bp overlap
ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 310 bp overlap
ChIP DC GSE123347.SPI1.DC 150 bp overlap
ChIP EM-3 GSE128834.SPI1.EM-3 196 bp overlap
ChIP HL-60 ENCFF645GBT 271 bp overlap
ChIP K-562 GSE70482.SPI1.K-562 287 bp overlap
ChIP K-562 ENCSR000BGW.SPI1.K-562 218 bp overlap
ChIP K-562_NABUT GSE74999.SPI1.K-562_NABUT 179 bp overlap
ChIP K-562_SAHA GSE74999.SPI1.K-562_SAHA 154 bp overlap
ChIP K562 ENCFF410ORC 205 bp overlap
ChIP KG-1 GSE128834.SPI1.KG-1 210 bp overlap
ChIP NB4 GSE128834.SPI1.NB4 269 bp overlap
ChIP THP-1 GSE128834.SPI1.THP-1 95 bp overlap
ChIP THP-1_DIFF GSE25426.SPI1.THP-1_DIFF 137 bp overlap
ChIP U-937 GSE128834.SPI1.U-937 189 bp overlap
ChIP monocyte_MACROPHAGE GSE31621.SPI1.monocyte_MACROPHAGE 141 bp overlap
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 91 bp overlap
ChIP primary-neutrophil_donorE GSE128834.SPI1.primary-neutrophil_donorE 117 bp overlap
ChIP primary-neutrophil_donorF GSE128834.SPI1.primary-neutrophil_donorF 132 bp overlap
SPIB 2 datasets
Motif DE_24h DE_24h-SPIB_MA0081.3 13 bp overlap
ChIP OCI-Ly3 GSE56857.SPIB.OCI-Ly3 215 bp overlap
SPIC 1 dataset
Motif DE_24h DE_24h-SPIC_MA0687.2 13 bp overlap
SREBF1 1 dataset
Motif DE_24h DE_24h-SREBF1_MA0595.1 10 bp overlap
SREBF2 1 dataset
Motif DE_24h DE_24h-SREBF2_MA0596.1 10 bp overlap
Spi1 2 datasets
Motif DE_24h DE_24h-Spi1_MA0080.7 13 bp overlap
Motif DE_24h DE_24h-Spi1_MA0080.7 13 bp overlap
Spz1 1 dataset
Motif DE_24h DE_24h-Spz1_MA0111.1 11 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 181 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 222 bp overlap
TBX21 1 dataset
Motif DE_24h DE_24h-TBX21_MA0690.3 10 bp overlap
TCF7 4 datasets
Motif DE_24h DE_24h-TCF7_MA0769.3 7 bp overlap
Motif DE_36h DE_36h-TCF7_MA0769.3 7 bp overlap
Motif DE_48h DE_48h-TCF7_MA0769.3 7 bp overlap
Motif DE_60h DE_60h-TCF7_MA0769.3 7 bp overlap
TERF1 1 dataset
ChIP HEK293_HHV6-GFP GSE121985.TERF1.HEK293_HHV6-GFP 203 bp overlap
Tbx6 4 datasets
Motif DE_24h DE_24h-Tbx6_MA1567.3 9 bp overlap
Motif DE_36h DE_36h-Tbx6_MA1567.3 9 bp overlap
Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
ZBTB11 1 dataset
Motif DE_24h DE_24h-ZBTB11_MA2329.1 9 bp overlap
ZBTB40 2 datasets
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 377 bp overlap
ChIP K562 ENCFF521DSV 290 bp overlap
ZBTB7A 1 dataset
Motif DE_24h DE_24h-ZBTB7A_MA0750.3 9 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 152 bp overlap
ZFP36 1 dataset
ChIP K-562 ENCSR776CYN.ZFP36.K-562 198 bp overlap
ZMYM3 2 datasets
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 256 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 224 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 175 bp overlap
ZNF354A 1 dataset
Motif DE_24h DE_24h-ZNF354A_MA1978.2 20 bp overlap
ZNF384 1 dataset
Motif DE_24h DE_24h-ZNF384_MA1125.2 8 bp overlap
ZNF740 1 dataset
Motif DE_24h DE_24h-ZNF740_MA0753.3 10 bp overlap
Zbtb2 1 dataset
Motif DE_24h DE_24h-Zbtb2_MA2340.1 10 bp overlap