chr2 : 138,271,484 – 138,271,872
388 bp 96 TFs 0 linked genes
This 388 bp open chromatin element has no linked target genes and is bound by 96 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:138,266,484 – 138,276,872
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
96 transcription factors
Source
Cell type
ARNT2 1 dataset
Motif DE_12h DE_12h-ARNT2_MA1464.2 8 bp overlap
ARNT::HIF1A 1 dataset
Motif DE_12h DE_12h-ARNTHIF1A_MA0259.2 5 bp overlap
Arid3a 1 dataset
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
Arnt 1 dataset
Motif DE_12h DE_12h-Arnt_MA0004.1 6 bp overlap
BRD4 1 dataset
ChIP HAP1 GSE108387.BRD4.HAP1 313 bp overlap
CLOCK 1 dataset
Motif DE_12h DE_12h-CLOCK_MA0819.3 7 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCFF432ZEW 305 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 209 bp overlap
Creb3l2 1 dataset
Motif DE_12h DE_12h-Creb3l2_MA0608.1 9 bp overlap
FEZF2 1 dataset
Motif DE_12h DE_12h-FEZF2_MA2341.1 8 bp overlap
GATA2 2 datasets
Motif DE_12h DE_12h-GATA2_MA0036.4 7 bp overlap
Motif ES_0h ES_0h-GATA2_MA0036.4 7 bp overlap
GATA4 2 datasets
Motif DE_12h DE_12h-GATA4_MA0482.3 8 bp overlap
Motif ES_0h ES_0h-GATA4_MA0482.3 8 bp overlap
GATA5 2 datasets
Motif DE_12h DE_12h-GATA5_MA0766.3 8 bp overlap
Motif ES_0h ES_0h-GATA5_MA0766.3 8 bp overlap
GATA6 7 datasets
Motif DE_12h DE_12h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 258 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 283 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 277 bp overlap
Motif ES_0h ES_0h-GATA6_MA1104.3 8 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 286 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 256 bp overlap
GLI3 2 datasets
Motif DE_12h DE_12h-GLI3_MA1491.3 15 bp overlap
Motif ES_0h ES_0h-GLI3_MA1491.3 15 bp overlap
Gata3 2 datasets
Motif DE_12h DE_12h-Gata3_MA0037.5 8 bp overlap
Motif ES_0h ES_0h-Gata3_MA0037.5 8 bp overlap
Gli1 2 datasets
Motif DE_12h DE_12h-Gli1_MA1990.2 10 bp overlap
Motif ES_0h ES_0h-Gli1_MA1990.2 10 bp overlap
HES1 1 dataset
Motif DE_12h DE_12h-HES1_MA1099.3 8 bp overlap
HES5 1 dataset
Motif DE_12h DE_12h-HES5_MA0821.2 10 bp overlap
HES6 1 dataset
Motif DE_12h DE_12h-HES6_MA1493.1 10 bp overlap
HEY1 1 dataset
Motif DE_12h DE_12h-HEY1_MA0823.1 10 bp overlap
HEY2 1 dataset
Motif DE_12h DE_12h-HEY2_MA0649.2 9 bp overlap
HNF4A 1 dataset
Motif DE_12h DE_12h-HNF4A_MA1494.2 14 bp overlap
Hnf1A 2 datasets
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
Motif ES_0h ES_0h-Hnf1A_MA1991.2 10 bp overlap
Irf1 1 dataset
Motif ES_0h ES_0h-Irf1_MA0050.4 11 bp overlap
Isl1 2 datasets
Motif DE_12h DE_12h-Isl1_MA1608.2 7 bp overlap
Motif ES_0h ES_0h-Isl1_MA1608.2 7 bp overlap
Lef1 2 datasets
Motif DE_12h DE_12h-Lef1_MA0768.3 8 bp overlap
Motif ES_0h ES_0h-Lef1_MA0768.3 8 bp overlap
MAX 3 datasets
Motif DE_12h DE_12h-MAX_MA0058.4 6 bp overlap
ChIP H1 ENCFF914VQY 339 bp overlap
ChIP K562 ENCFF110LJS 350 bp overlap
MLXIPL 1 dataset
Motif DE_12h DE_12h-MLXIPL_MA0664.2 8 bp overlap
MNT 1 dataset
Motif DE_12h DE_12h-MNT_MA0825.2 6 bp overlap
MYC 1 dataset
Motif DE_12h DE_12h-MYC_MA0147.4 8 bp overlap
MYCN 1 dataset
Motif DE_12h DE_12h-MYCN_MA0104.5 8 bp overlap
MZF1 1 dataset
Motif DE_12h DE_12h-MZF1_MA0056.3 8 bp overlap
Mlxip 1 dataset
Motif DE_12h DE_12h-Mlxip_MA0622.2 6 bp overlap
NANOG 4 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 272 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 202 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 253 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 236 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NR1D1 1 dataset
Motif DE_12h DE_12h-NR1D1_MA1531.2 14 bp overlap
NR2C2 1 dataset
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
NR2F1 2 datasets
Motif DE_12h DE_12h-NR2F1_MA1537.2 13 bp overlap
Motif ES_0h ES_0h-NR2F1_MA1537.2 13 bp overlap
NR4A1 1 dataset
Motif DE_12h DE_12h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif DE_12h DE_12h-NR4A2_MA0160.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
Npas2 1 dataset
Motif DE_12h DE_12h-Npas2_MA0626.2 8 bp overlap
Nr2F6 1 dataset
Motif DE_12h DE_12h-Nr2F6_MA0728.1 15 bp overlap
Nr2f6 2 datasets
Motif DE_12h DE_12h-Nr2f6_MA0677.2 13 bp overlap
Motif ES_0h ES_0h-Nr2f6_MA0677.2 13 bp overlap
POU1F1 4 datasets
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap
Motif ES_0h ES_0h-POU1F1_MA0784.3 14 bp overlap
POU2F1 4 datasets
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif DE_12h DE_12h-POU2F1_MA0785.2 9 bp overlap
Motif ES_0h ES_0h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 3 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 4 datasets
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap
Motif ES_0h ES_0h-POU2F2_MA0507.3 13 bp overlap
POU2F3 4 datasets
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
Motif ES_0h ES_0h-POU2F3_MA0627.3 9 bp overlap
POU3F1 4 datasets
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU3F2 4 datasets
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif DE_12h DE_12h-POU3F2_MA0787.1 12 bp overlap
Motif ES_0h ES_0h-POU3F2_MA0787.1 12 bp overlap
POU3F3 4 datasets
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif DE_12h DE_12h-POU3F3_MA0788.1 13 bp overlap
Motif ES_0h ES_0h-POU3F3_MA0788.1 13 bp overlap
POU3F4 4 datasets
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif DE_12h DE_12h-POU3F4_MA0789.1 9 bp overlap
Motif ES_0h ES_0h-POU3F4_MA0789.1 9 bp overlap
POU4F1 1 dataset
Motif DE_12h DE_12h-POU4F1_MA0790.2 12 bp overlap
POU4F2 1 dataset
Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap
POU4F3 1 dataset
Motif DE_12h DE_12h-POU4F3_MA0791.2 12 bp overlap
POU5F1 15 datasets
ChIP BG03 GSE21614.POU5F1.BG03 182 bp overlap
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 388 bp overlap
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP H1 ENCFF698ZAP 205 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 282 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 173 bp overlap
ChIP WA01 ENCSR000BMU.POU5F1.WA01 217 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 135 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 388 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 388 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 259 bp overlap
POU5F1B 4 datasets
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif DE_12h DE_12h-POU5F1B_MA0792.1 9 bp overlap
Motif ES_0h ES_0h-POU5F1B_MA0792.1 9 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 388 bp overlap
Pgr 1 dataset
Motif DE_12h DE_12h-Pgr_MA2323.1 17 bp overlap
Pou5f1::Sox2 3 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
Pparg::Rxra 2 datasets
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
Motif DE_12h DE_12h-PpargRxra_MA0065.3 13 bp overlap
Prdm4 2 datasets
Motif DE_12h DE_12h-Prdm4_MA1647.3 11 bp overlap
Motif ES_0h ES_0h-Prdm4_MA1647.3 11 bp overlap
RARA 2 datasets
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
Motif DE_12h DE_12h-RARA_MA0729.1 18 bp overlap
RBPJ 2 datasets
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 163 bp overlap
RFX1 1 dataset
Motif DE_12h DE_12h-RFX1_MA0509.3 16 bp overlap
RFX2 1 dataset
Motif DE_12h DE_12h-RFX2_MA0600.3 14 bp overlap
RFX3 1 dataset
Motif DE_12h DE_12h-RFX3_MA0798.3 16 bp overlap
RFX5 1 dataset
Motif DE_12h DE_12h-RFX5_MA0510.3 14 bp overlap
Rarb 2 datasets
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Rarg 3 datasets
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
Motif DE_12h DE_12h-Rarg_MA0860.1 17 bp overlap
Rfx6 1 dataset
Motif DE_12h DE_12h-Rfx6_MA1724.2 9 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 255 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 286 bp overlap
Stat2 1 dataset
Motif ES_0h ES_0h-Stat2_MA1623.2 10 bp overlap
TCF7 2 datasets
Motif DE_12h DE_12h-TCF7_MA0769.3 7 bp overlap
Motif ES_0h ES_0h-TCF7_MA0769.3 7 bp overlap
TCF7L1 2 datasets
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
Motif ES_0h ES_0h-TCF7L1_MA1421.1 12 bp overlap
TCF7L2 2 datasets
Motif DE_12h DE_12h-TCF7L2_MA0523.2 9 bp overlap
Motif ES_0h ES_0h-TCF7L2_MA0523.2 9 bp overlap
THRA 2 datasets
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
Motif DE_12h DE_12h-THRA_MA1969.2 18 bp overlap
THRB 1 dataset
Motif DE_12h DE_12h-THRB_MA1576.2 18 bp overlap
TRPS1 2 datasets
Motif DE_12h DE_12h-TRPS1_MA1970.2 8 bp overlap
Motif ES_0h ES_0h-TRPS1_MA1970.2 8 bp overlap
USF1 4 datasets
ChIP H1 ENCFF090WVU 241 bp overlap
ChIP K562 ENCFF633EZB 265 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 220 bp overlap
ChIP WTC11 ENCFF699QGS 358 bp overlap
USF2 1 dataset
ChIP K562 ENCFF397QGU 265 bp overlap
YY1 6 datasets
ChIP H1 ENCFF524BTL 332 bp overlap
ChIP K-562 ENCSR000BMH.YY1.K-562 179 bp overlap
ChIP K562 ENCFF660QRE 311 bp overlap
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 161 bp overlap
ChIP NT2/D1 ENCFF999MII 325 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 217 bp overlap
Yy1 1 dataset
Motif DE_12h DE_12h-Yy1_MA0095.4 8 bp overlap
ZFP42 2 datasets
Motif DE_12h DE_12h-ZFP42_MA1651.2 13 bp overlap
Motif DE_12h DE_12h-ZFP42_MA1651.2 13 bp overlap
ZIM3 1 dataset
Motif ES_0h ES_0h-ZIM3_MA1709.2 11 bp overlap
ZNF184 1 dataset
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ZNF213 1 dataset
Motif DE_12h DE_12h-ZNF213_MA2121.1 12 bp overlap
ZNF320 2 datasets
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
Motif DE_12h DE_12h-ZNF320_MA1976.2 20 bp overlap
ZNF384 1 dataset
Motif DE_12h DE_12h-ZNF384_MA1125.2 8 bp overlap
ZNF547 2 datasets
Motif DE_12h DE_12h-ZNF547_MA2334.1 13 bp overlap
Motif ES_0h ES_0h-ZNF547_MA2334.1 13 bp overlap
ZNF549 1 dataset
Motif DE_12h DE_12h-ZNF549_MA1728.2 8 bp overlap
ZNF75D 1 dataset
Motif DE_12h DE_12h-ZNF75D_MA1601.2 12 bp overlap
ZNF766 1 dataset
Motif ES_0h ES_0h-ZNF766_MA2098.1 9 bp overlap
ZNF768 2 datasets
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
Motif ES_0h ES_0h-ZNF768_MA1731.2 9 bp overlap
Zfp809 1 dataset
Motif DE_12h DE_12h-Zfp809_MA2125.1 9 bp overlap
Huangfu Lab · Publications · Resources · Contact