chr2 : 60,422,939 – 60,423,480
541 bp 105 TFs 1 linked gene
This 541 bp open chromatin element is linked to BCL11A and is bound by 105 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
BCL11A 130.5 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:60,417,939 – 60,428,480
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
105 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 541 bp overlap
ARNT::HIF1A 2 datasets
Motif DE_48h DE_48h-ARNTHIF1A_MA0259.2 5 bp overlap
Motif DE_60h DE_60h-ARNTHIF1A_MA0259.2 5 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 464 bp overlap
BCL6 1 dataset
Motif DE_48h DE_48h-BCL6_MA0463.3 13 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 149 bp overlap
BRD4 11 datasets
ChIP BE2C GSE80151.BRD4.BE2C 273 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 455 bp overlap
ChIP NMC24335 GSE96775.BRD4.NMC24335 160 bp overlap
ChIP NMC24335 GSE96775.BRD4.NMC24335 288 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 273 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 447 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 391 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 380 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 541 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-pos GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-pos 284 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 541 bp overlap
CEBPA 1 dataset
Motif DE_48h DE_48h-CEBPA_MA0102.5 10 bp overlap
CEBPD 1 dataset
Motif DE_48h DE_48h-CEBPD_MA0836.3 8 bp overlap
CTCF 3 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 541 bp overlap
ChIP HUES-64 GSE97394.CTCF.HUES-64 223 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 200 bp overlap
E2F6 2 datasets
Motif DE_48h DE_48h-E2F6_MA0471.3 8 bp overlap
Motif DE_60h DE_60h-E2F6_MA0471.3 8 bp overlap
EBF3_P177L 1 dataset
ChIP SK-N-SH GSE90682.EBF3_P177L.SK-N-SH 169 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 437 bp overlap
EZH2 3 datasets
ChIP Pfeiffer GSE45982.EZH2.Pfeiffer 137 bp overlap
ChIP Pfeiffer GSE45982.EZH2.Pfeiffer 191 bp overlap
ChIP WSU-DLCL2 GSE45982.EZH2.WSU-DLCL2 137 bp overlap
EZH2_phosphoT487 1 dataset
ChIP PC-9 ENCSR702GMW.EZH2_phosphoT487.PC-9 207 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 364 bp overlap
GATA1 2 datasets
Motif DE_48h DE_48h-GATA1_MA0035.5 7 bp overlap
Motif DE_60h DE_60h-GATA1_MA0035.5 7 bp overlap
GATA2 4 datasets
Motif DE_48h DE_48h-GATA2_MA0036.4 7 bp overlap
Motif DE_60h DE_60h-GATA2_MA0036.4 7 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 258 bp overlap
ChIP hiPSC_SLC6ebs GSE107639.GATA2.hiPSC_SLC6ebs 182 bp overlap
GATA3 3 datasets
ChIP Kelly GSE94822.GATA3.Kelly 250 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 250 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 246 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 529 bp overlap
ChIP DE DE-GATA4-2 513 bp overlap
Motif DE_48h DE_48h-GATA4_MA0482.3 8 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
ChIP foregut GSE117136.GATA4.foregut 541 bp overlap
GATA6 13 datasets
ChIP DE DE-GATA6-1 532 bp overlap
ChIP DE DE-GATA6-2 529 bp overlap
Motif DE_48h DE_48h-GATA6_MA1104.3 8 bp overlap
Motif DE_60h DE_60h-GATA6_MA1104.3 8 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 541 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 482 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 541 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 541 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 541 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 541 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 483 bp overlap
ChIP foregut GSE117136.GATA6.foregut 483 bp overlap
ChIP foregut_KO GSE117136.GATA6.foregut_KO 497 bp overlap
GLI3 2 datasets
Motif DE_48h DE_48h-GLI3_MA1491.3 15 bp overlap
Motif DE_60h DE_60h-GLI3_MA1491.3 15 bp overlap
Gata3 2 datasets
Motif DE_48h DE_48h-Gata3_MA0037.5 8 bp overlap
Motif DE_60h DE_60h-Gata3_MA0037.5 8 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 235 bp overlap
HDAC1 1 dataset
ChIP PC-3 GSE147455.HDAC1.PC-3 200 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 441 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 392 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 427 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 503 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 241 bp overlap
KLF1 2 datasets
Motif DE_48h DE_48h-KLF1_MA0493.3 8 bp overlap
Motif DE_60h DE_60h-KLF1_MA0493.3 8 bp overlap
KLF10 2 datasets
Motif DE_48h DE_48h-KLF10_MA1511.2 9 bp overlap
Motif DE_60h DE_60h-KLF10_MA1511.2 9 bp overlap
KLF11 2 datasets
Motif DE_48h DE_48h-KLF11_MA1512.2 10 bp overlap
Motif DE_60h DE_60h-KLF11_MA1512.2 10 bp overlap
KLF14 2 datasets
Motif DE_48h DE_48h-KLF14_MA0740.2 9 bp overlap
Motif DE_60h DE_60h-KLF14_MA0740.2 9 bp overlap
KLF16 2 datasets
Motif DE_48h DE_48h-KLF16_MA0741.1 11 bp overlap
Motif DE_60h DE_60h-KLF16_MA0741.1 11 bp overlap
KLF2 2 datasets
Motif DE_48h DE_48h-KLF2_MA1515.2 8 bp overlap
Motif DE_60h DE_60h-KLF2_MA1515.2 8 bp overlap
KLF4 5 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 248 bp overlap
Motif DE_48h DE_48h-KLF4_MA0039.5 8 bp overlap
Motif DE_60h DE_60h-KLF4_MA0039.5 8 bp overlap
ChIP HAP1 GSE130417.KLF4.HAP1 474 bp overlap
ChIP hiPSC GSE56567.KLF4.hiPSC 237 bp overlap
KLF5 2 datasets
Motif DE_48h DE_48h-KLF5_MA0599.1 10 bp overlap
Motif DE_60h DE_60h-KLF5_MA0599.1 10 bp overlap
KLF9 3 datasets
Motif DE_48h DE_48h-KLF9_MA1107.3 11 bp overlap
Motif DE_60h DE_60h-KLF9_MA1107.3 11 bp overlap
ChIP GBM1A GSE62211.KLF9.GBM1A 152 bp overlap
MAX 1 dataset
ChIP WTC11 ENCFF223QFY 313 bp overlap
MAZ 2 datasets
Motif DE_48h DE_48h-MAZ_MA1522.2 8 bp overlap
Motif DE_60h DE_60h-MAZ_MA1522.2 8 bp overlap
MYCN 5 datasets
ChIP BE2C GSE80151.MYCN.BE2C 277 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 269 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 217 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 277 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 218 bp overlap
Mecom 1 dataset
Motif DE_60h DE_60h-Mecom_MA0029.2 11 bp overlap
NANOG 7 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 252 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 388 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 348 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 440 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 241 bp overlap
ChIP hESC GSE20650.NANOG.hESC 259 bp overlap
ChIP hESC GSE18292.NANOG.hESC 192 bp overlap
NFATC3 1 dataset
Motif DE_60h DE_60h-NFATC3_MA0625.3 6 bp overlap
NKX2-2 1 dataset
Motif DE_60h DE_60h-NKX2-2_MA1645.2 8 bp overlap
NKX2-5 2 datasets
Motif DE_60h DE_60h-NKX2-5_MA0063.3 7 bp overlap
Motif DE_60h DE_60h-NKX2-5_MA0063.3 7 bp overlap
NR2C2 2 datasets
Motif DE_48h DE_48h-NR2C2_MA0504.2 14 bp overlap
Motif DE_60h DE_60h-NR2C2_MA0504.2 14 bp overlap
Nfatc1 1 dataset
Motif DE_60h DE_60h-Nfatc1_MA0624.3 6 bp overlap
Nfatc2 1 dataset
Motif DE_60h DE_60h-Nfatc2_MA0152.3 8 bp overlap
PATZ1 2 datasets
Motif DE_48h DE_48h-PATZ1_MA1961.2 11 bp overlap
Motif DE_60h DE_60h-PATZ1_MA1961.2 11 bp overlap
PAX3-FOXO1 1 dataset
ChIP Hs-352-Sk GSE83725.PAX3-FOXO1.Hs-352-Sk 234 bp overlap
PBX3 1 dataset
Motif DE_60h DE_60h-PBX3_MA1114.2 11 bp overlap
PDX1 1 dataset
ChIP hiPSC GSE125768.PDX1.hiPSC 185 bp overlap
PHOX2B 1 dataset
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 184 bp overlap
PKNOX1 1 dataset
Motif DE_60h DE_60h-PKNOX1_MA0782.3 10 bp overlap
POU2F1 1 dataset
Motif DE_60h DE_60h-POU2F1_MA0785.2 9 bp overlap
POU2F1::SOX2 1 dataset
Motif DE_60h DE_60h-POU2F1SOX2_MA1962.1 17 bp overlap
POU2F2 1 dataset
Motif DE_60h DE_60h-POU2F2_MA0507.3 13 bp overlap
POU2F3 2 datasets
Motif DE_60h DE_60h-POU2F3_MA0627.3 9 bp overlap
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 340 bp overlap
POU3F2 1 dataset
ChIP hiPSC_SGC0946 GSE149017.POU3F2.hiPSC_SGC0946 202 bp overlap
POU3F4 1 dataset
Motif DE_60h DE_60h-POU3F4_MA0789.1 9 bp overlap
POU5F1 13 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 216 bp overlap
Motif DE_60h DE_60h-POU5F1_MA1115.2 7 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 446 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 398 bp overlap
ChIP NCCIT GSE36134.POU5F1.NCCIT 338 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 467 bp overlap
ChIP OSK GSE81899.POU5F1.OSK 202 bp overlap
ChIP OSKM GSE81899.POU5F1.OSKM 287 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 275 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 156 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 541 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 392 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 295 bp overlap
POU5F1B 1 dataset
Motif DE_60h DE_60h-POU5F1B_MA0792.1 9 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 301 bp overlap
PRDM9 1 dataset
Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap
Pou5f1::Sox2 1 dataset
Motif DE_60h DE_60h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 5 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 541 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 541 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 541 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 541 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 198 bp overlap
RBPJ 3 datasets
Motif DE_48h DE_48h-RBPJ_MA1116.2 6 bp overlap
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 162 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 466 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 495 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 476 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 382 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 461 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 441 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 414 bp overlap
SMARCA4 4 datasets
ChIP NSC GSE125033.SMARCA4.NSC 326 bp overlap
ChIP WA09_heat-shock GSE105028.SMARCA4.WA09_heat-shock 198 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 320 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 429 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 189 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 323 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 473 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 277 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 452 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 394 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 444 bp overlap
SOX2 2 datasets
ChIP RENVM GSE49404.SOX2.RENVM 169 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 314 bp overlap
SP1 3 datasets
Motif DE_48h DE_48h-SP1_MA0079.5 9 bp overlap
Motif DE_60h DE_60h-SP1_MA0079.5 9 bp overlap
Motif DE_60h DE_60h-SP1_MA0079.5 9 bp overlap
SP4 3 datasets
Motif DE_48h DE_48h-SP4_MA0685.2 9 bp overlap
Motif DE_60h DE_60h-SP4_MA0685.2 9 bp overlap
Motif DE_60h DE_60h-SP4_MA0685.2 9 bp overlap
SP5 3 datasets
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
Motif DE_60h DE_60h-SP5_MA1965.2 6 bp overlap
SP9 2 datasets
Motif DE_48h DE_48h-SP9_MA1564.2 10 bp overlap
Motif DE_60h DE_60h-SP9_MA1564.2 10 bp overlap
STAT1 1 dataset
Motif DE_48h DE_48h-STAT1_MA0137.4 9 bp overlap
STAT3 1 dataset
Motif DE_48h DE_48h-STAT3_MA0144.3 9 bp overlap
Stat4 1 dataset
Motif DE_48h DE_48h-Stat4_MA0518.2 10 bp overlap
Stat5a 1 dataset
Motif DE_48h DE_48h-Stat5a_MA1624.2 9 bp overlap
Stat5a::Stat5b 1 dataset
Motif DE_48h DE_48h-Stat5aStat5b_MA0519.2 9 bp overlap
Stat5b 1 dataset
Motif DE_48h DE_48h-Stat5b_MA1625.2 9 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 217 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 348 bp overlap
TBX18 2 datasets
Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap
Motif DE_60h DE_60h-TBX18_MA1565.2 9 bp overlap
TBX2 1 dataset
ChIP Kelly GSE94822.TBX2.Kelly 245 bp overlap
TBX20 2 datasets
Motif DE_48h DE_48h-TBX20_MA0689.1 11 bp overlap
Motif DE_60h DE_60h-TBX20_MA0689.1 11 bp overlap
TP53 1 dataset
ChIP hESC_DIFF GSE39912.TP53.hESC_DIFF 281 bp overlap
TRPS1 2 datasets
Motif DE_48h DE_48h-TRPS1_MA1970.2 8 bp overlap
Motif DE_60h DE_60h-TRPS1_MA1970.2 8 bp overlap
TWIST1 4 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 170 bp overlap
ChIP BE2C GSE80151.TWIST1.BE2C 200 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 170 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 200 bp overlap
Tbx6 2 datasets
Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap
Motif DE_60h DE_60h-Tbx6_MA1567.3 9 bp overlap
USF1 2 datasets
ChIP SK-N-SH ENCSR000BMF.USF1.SK-N-SH 129 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 112 bp overlap
VEZF1 2 datasets
Motif DE_48h DE_48h-VEZF1_MA1578.2 6 bp overlap
Motif DE_60h DE_60h-VEZF1_MA1578.2 6 bp overlap
Wt1 2 datasets
Motif DE_48h DE_48h-Wt1_MA1627.2 10 bp overlap
Motif DE_60h DE_60h-Wt1_MA1627.2 10 bp overlap
ZBTB12 1 dataset
Motif DE_48h DE_48h-ZBTB12_MA1649.2 7 bp overlap
ZNF148 3 datasets
Motif DE_48h DE_48h-ZNF148_MA1653.2 10 bp overlap
Motif DE_60h DE_60h-ZNF148_MA1653.2 10 bp overlap
Motif DE_60h DE_60h-ZNF148_MA1653.2 10 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 297 bp overlap
ZNF281 3 datasets
Motif DE_48h DE_48h-ZNF281_MA1630.3 10 bp overlap
Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap
Motif DE_60h DE_60h-ZNF281_MA1630.3 10 bp overlap
ZNF331 2 datasets
Motif DE_48h DE_48h-ZNF331_MA1726.2 10 bp overlap
Motif DE_60h DE_60h-ZNF331_MA1726.2 10 bp overlap
ZNF418 1 dataset
Motif DE_48h DE_48h-ZNF418_MA1980.1 15 bp overlap
ZNF460 2 datasets
Motif DE_48h DE_48h-ZNF460_MA1596.1 16 bp overlap
Motif DE_60h DE_60h-ZNF460_MA1596.1 16 bp overlap
ZNF680 3 datasets
Motif DE_36h DE_36h-ZNF680_MA1729.2 11 bp overlap
Motif DE_48h DE_48h-ZNF680_MA1729.2 11 bp overlap
Motif DE_48h DE_48h-ZNF680_MA1729.2 11 bp overlap
ZNF740 2 datasets
Motif DE_48h DE_48h-ZNF740_MA0753.3 10 bp overlap
Motif DE_60h DE_60h-ZNF740_MA0753.3 10 bp overlap
ZNF8 1 dataset
Motif DE_60h DE_60h-ZNF8_MA1718.1 20 bp overlap
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