chr2 : 44,430,133 44,430,674
541 bp 78 TFs 3 linked genes
This 541 bp open chromatin element is linked to CAMKMT, PREPL, and PPM1B and is bound by 78 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
CAMKMT 68.5 kb Distal Multiome
PREPL 69.0 kb Distal Multiome
PPM1B 261.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr2:44,425,133 – 44,435,674
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 352 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 285 bp overlap
BRD4 1 dataset
ChIP CD4_JG1 GSE33281.BRD4.CD4_JG1 189 bp overlap
CHD4 1 dataset
ChIP macrophage GSE136216.CHD4.macrophage 210 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 368 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 262 bp overlap
EOMES 2 datasets
Motif DE_48h DE_48h-EOMES_MA0800.2 9 bp overlap
ChIP hESC GSE26097.EOMES.hESC 518 bp overlap
EP300 2 datasets
ChIP WA01 ENCSR000BKK.EP300.WA01 130 bp overlap
ChIP hESC GSE17917.EP300.hESC 386 bp overlap
ERG 1 dataset
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 197 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 329 bp overlap
EZH2 1 dataset
ChIP neural progenitor cell ENCFF018MKA 217 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 541 bp overlap
ChIP DE DE-FOXA2-2 541 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 263 bp overlap
FOXP4 1 dataset
ChIP WTC11 ENCFF708TAF 293 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 529 bp overlap
ChIP DE DE-GATA4-2 532 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 510 bp overlap
ChIP DE DE-GATA6-2 541 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 456 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 503 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 410 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 401 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 541 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 452 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 403 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 285 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 486 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 305 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 500 bp overlap
MGA 1 dataset
Motif DE_48h DE_48h-MGA_MA0801.1 8 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 242 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 357 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 541 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 532 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 301 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 541 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 541 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 516 bp overlap
ChIP hESC GSE20650.NANOG.hESC 306 bp overlap
ChIP hESC GSE18292.NANOG.hESC 320 bp overlap
NIPBL 4 datasets
ChIP hESC GSE64758.NIPBL.hESC 225 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 308 bp overlap
ChIP hESC_WNT3A_ACTIVIN GSE64758.NIPBL.hESC_WNT3A_ACTIVIN 397 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 264 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 137 bp overlap
POU1F1 1 dataset
Motif DE_48h DE_48h-POU1F1_MA0784.3 14 bp overlap
POU2F1 1 dataset
Motif DE_48h DE_48h-POU2F1_MA0785.2 9 bp overlap
POU2F2 1 dataset
Motif DE_48h DE_48h-POU2F2_MA0507.3 13 bp overlap
POU2F3 1 dataset
Motif DE_48h DE_48h-POU2F3_MA0627.3 9 bp overlap
POU3F1 1 dataset
Motif DE_48h DE_48h-POU3F1_MA0786.2 10 bp overlap
POU3F2 1 dataset
Motif DE_48h DE_48h-POU3F2_MA0787.1 12 bp overlap
POU3F3 1 dataset
Motif DE_48h DE_48h-POU3F3_MA0788.1 13 bp overlap
POU3F4 1 dataset
Motif DE_48h DE_48h-POU3F4_MA0789.1 9 bp overlap
POU5F1 11 datasets
Motif DE_48h DE_48h-POU5F1_MA1115.2 7 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 398 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 479 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 384 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 245 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 200 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 361 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 413 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 232 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 146 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 318 bp overlap
Prdm5 1 dataset
Motif DE_48h DE_48h-Prdm5_MA1999.2 11 bp overlap
RARA 2 datasets
ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 252 bp overlap
ChIP hiPSC_D4 GSE109172.RARA.hiPSC_D4 287 bp overlap
RELA 1 dataset
ChIP aortic-endothelial-cell_IL1B_D10 GSE139377.RELA.aortic-endothelial-cell_IL1B_D10 106 bp overlap
Rfx6 1 dataset
Motif DE_48h DE_48h-Rfx6_MA1724.2 9 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 263 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 260 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 451 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 474 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 400 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 377 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 440 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 269 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 265 bp overlap
SMAD3 2 datasets
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 161 bp overlap
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 172 bp overlap
SMARCA4 2 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 541 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 316 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 541 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 312 bp overlap
SMARCC1 5 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 252 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 502 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 412 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 499 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 344 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 394 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 477 bp overlap
SOX18 1 dataset
Motif ES_0h ES_0h-SOX18_MA1563.2 8 bp overlap
SOX2 3 datasets
ChIP H9 GSE46837.SOX2.H9 156 bp overlap
ChIP hESC GSE18292.SOX2.hESC 232 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 367 bp overlap
SOX21 1 dataset
ChIP neuroepithelilal-cells GSE110505.SOX21.neuroepithelilal-cells 327 bp overlap
SOX9 1 dataset
Motif ES_0h ES_0h-SOX9_MA0077.2 8 bp overlap
SP1 2 datasets
ChIP H1 ENCFF263FUH 321 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 276 bp overlap
SRY 1 dataset
Motif ES_0h ES_0h-SRY_MA0084.2 7 bp overlap
T 2 datasets
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 464 bp overlap
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 406 bp overlap
TBP 1 dataset
ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 230 bp overlap
TBR1 1 dataset
Motif DE_48h DE_48h-TBR1_MA0802.2 9 bp overlap
TBX1 1 dataset
Motif DE_48h DE_48h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_48h DE_48h-TBX15_MA0803.1 8 bp overlap
TBX18 1 dataset
Motif DE_48h DE_48h-TBX18_MA1565.2 9 bp overlap
TBX19 1 dataset
Motif DE_48h DE_48h-TBX19_MA0804.2 17 bp overlap
TBX2 1 dataset
Motif DE_48h DE_48h-TBX2_MA0688.2 9 bp overlap
TBX20 1 dataset
Motif DE_48h DE_48h-TBX20_MA0689.1 11 bp overlap
TBX21 1 dataset
Motif DE_48h DE_48h-TBX21_MA0690.3 10 bp overlap
TBX3 1 dataset
Motif DE_48h DE_48h-TBX3_MA1566.3 9 bp overlap
TBX4 1 dataset
Motif DE_48h DE_48h-TBX4_MA0806.1 8 bp overlap
TBX5 1 dataset
Motif DE_48h DE_48h-TBX5_MA0807.1 8 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 290 bp overlap
TEAD1 1 dataset
ChIP WTC11 ENCFF502QUV 390 bp overlap
TEAD4 2 datasets
ChIP ESC S26-ESC-d0-TEAD4-exp1 319 bp overlap
ChIP H1 ENCFF778PAX 245 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 395 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 315 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 479 bp overlap
Tbx6 1 dataset
Motif DE_48h DE_48h-Tbx6_MA1567.3 9 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 158 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 403 bp overlap
ZNF547 2 datasets
Motif DE_48h DE_48h-ZNF547_MA2334.1 13 bp overlap
Motif DE_48h DE_48h-ZNF547_MA2334.1 13 bp overlap
ZNF582 1 dataset
Motif DE_48h DE_48h-ZNF582_MA1983.2 19 bp overlap