chrX : 25,003,120 – 25,003,351
231 bp 61 TFs 1 linked gene
This 231 bp open chromatin element is linked to ARX and is bound by 61 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ARX 3.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chrX:24,998,120 – 25,008,351
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
61 transcription factors
Source
Cell type
AR 3 datasets
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 67 bp overlap
ChIP prostate_2815_T GSE130408.AR.prostate_2815_T 65 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 172 bp overlap
ARNT 1 dataset
ChIP MCF-7_aza GSE85352.ARNT.MCF-7_aza 219 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 231 bp overlap
ChIP H1 ENCFF399KAM 231 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 231 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 199 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 231 bp overlap
BCOR 1 dataset
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 231 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 231 bp overlap
BRD4 4 datasets
ChIP VCaP GSE148358.BRD4.VCaP 109 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 213 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 231 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 202 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 231 bp overlap
CHD7 1 dataset
ChIP WA01 ENCSR000AVA.CHD7.WA01 136 bp overlap
CREB1 2 datasets
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 231 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 181 bp overlap
CTBP2 1 dataset
ChIP H1 ENCFF329MAX 207 bp overlap
CTCF 1 dataset
ChIP islet ERP004003.CTCF.islet 130 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 185 bp overlap
EGR1 2 datasets
ChIP H1 ENCFF451BLH 174 bp overlap
ChIP WA01 ENCSR000BJA.EGR1.WA01 139 bp overlap
ELF3 1 dataset
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 231 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 231 bp overlap
ChIP neural cell ENCFF442QNK 231 bp overlap
ERG 4 datasets
ChIP VCaP_DHAT_18H GSE28950.ERG.VCaP_DHAT_18H 146 bp overlap
ChIP VCaP_DHAT_2H GSE28950.ERG.VCaP_DHAT_2H 88 bp overlap
ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 229 bp overlap
ChIP VCaP_shERG GSE110655.ERG.VCaP_shERG 231 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D0 GSE129986.ETS1.cardiomyocyte_D0 216 bp overlap
EZH2 18 datasets
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 116 bp overlap
ChIP H1 ENCFF232NZA 231 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 231 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 212 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 197 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 231 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 221 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 231 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 231 bp overlap
ChIP fibroblast of lung ENCFF479BAW 231 bp overlap
ChIP fibroblast_LUNG ENCSR000ARO.EZH2.fibroblast_LUNG 231 bp overlap
ChIP hepatocyte ENCFF118DKH 127 bp overlap
ChIP hepatocyte ENCFF552DZB 231 bp overlap
ChIP keratinocyte ENCFF070STK 231 bp overlap
ChIP keratinocyte ENCFF070STK 231 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 231 bp overlap
ChIP neural progenitor cell ENCFF018MKA 231 bp overlap
ChIP neural progenitor cell ENCFF472NFV 231 bp overlap
EZH2_phosphoT487 1 dataset
ChIP GM23248 ENCSR096KPA.EZH2_phosphoT487.GM23248 179 bp overlap
FOXA1 1 dataset
ChIP VCaP_DHT24H GSE58428.FOXA1.VCaP_DHT24H 164 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 175 bp overlap
GABPA 2 datasets
ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 173 bp overlap
ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 173 bp overlap
GATA6 2 datasets
ChIP DE_D1 S41-DE-d1-GATA6-exp2 94 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 231 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 231 bp overlap
HIF1A 1 dataset
ChIP PC-3_hypoxia_siCtrl GSE106305.HIF1A.PC-3_hypoxia_siCtrl 173 bp overlap
JARID2 2 datasets
ChIP AMIPS8 GSE48516.JARID2.AMIPS8 183 bp overlap
ChIP UTEIPS4 GSE48516.JARID2.UTEIPS4 74 bp overlap
JUN 5 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 128 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 50 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 71 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 231 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 112 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 231 bp overlap
MXI1 2 datasets
ChIP neural ENCSR934NHU.MXI1.neural 143 bp overlap
ChIP neural cell ENCFF623HQN 231 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 231 bp overlap
NFKB1 1 dataset
ChIP HEK293T_2KR GSE129618.NFKB1.HEK293T_2KR 175 bp overlap
NME2 1 dataset
ChIP A-549_IND GSE40300.NME2.A-549_IND 52 bp overlap
PCGF2 2 datasets
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 231 bp overlap
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 117 bp overlap
POLR2A 4 datasets
ChIP body of pancreas ENCFF501FEC 231 bp overlap
ChIP body of pancreas ENCFF675RCN 231 bp overlap
ChIP neural cell ENCFF604SPB 160 bp overlap
ChIP ovary ENCFF425PQK 231 bp overlap
POU5F1 3 datasets
ChIP BG03 GSE21614.POU5F1.BG03 167 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 231 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 231 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 231 bp overlap
RAD21 2 datasets
ChIP neural ENCSR198ZYJ.RAD21.neural 218 bp overlap
ChIP neural cell ENCFF564MOT 231 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 227 bp overlap
RBM22 2 datasets
ChIP K-562 ENCSR848AOP.RBM22.K-562 147 bp overlap
ChIP K-562 GSE120104.RBM22.K-562 147 bp overlap
RELA 1 dataset
ChIP HEK293_TNF-1h GSE75562.RELA.HEK293_TNF-1h 231 bp overlap
RING1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.RING1.SYO-1_shRING1A-B 199 bp overlap
RNF2 3 datasets
ChIP H1 ENCFF239FFS 231 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 231 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 231 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 231 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 231 bp overlap
SIN3A 3 datasets
ChIP H1 ENCFF042ZSL 231 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 172 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 231 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 204 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 231 bp overlap
SMARCC1 1 dataset
ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 126 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 231 bp overlap
ChIP neural cell ENCFF795YGY 231 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 149 bp overlap
SRSF3 1 dataset
ChIP K-562 GSE120104.SRSF3.K-562 60 bp overlap
SS18 3 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 84 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 231 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 231 bp overlap
STAT3 1 dataset
ChIP BT-474 GSE152203.STAT3.BT-474 194 bp overlap
SUZ12 3 datasets
ChIP H1 ENCFF881NFR 231 bp overlap
ChIP WA01 ENCSR000ATS.SUZ12.WA01 231 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 231 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 87 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 231 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 166 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 231 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 231 bp overlap
ZBTB33 1 dataset
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 231 bp overlap
ZNF143 1 dataset
ChIP FLP143HA_T0 GSE39263.ZNF143.FLP143HA_T0 153 bp overlap
ZNF596 1 dataset
ChIP HEK293 ENCSR344SBD.ZNF596.HEK293 150 bp overlap
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