chr20:63,409,631–63,410,124

chr20 : 63,409,631 – 63,410,124

493 bp 60 TFs 12 linked genes

This 493 bp open chromatin element is linked to 12 target genes and is bound by 60 transcription factors.

Linked Genes

12 genes

Gene	Expression	Dist. to TSS	Distance	Link type
KCNQ2		62.7 kb	Distal	Multiome
EEF1A2		89.2 kb	Distal	Multiome
PPDPF		110.9 kb	Distal	Multiome
ARFGAP1		137.1 kb	Distal	Multiome
HELZ2		164.4 kb	Distal	Multiome
YTHDF1		193.7 kb	Distal	Multiome
GMEB2		217.2 kb	Distal	Multiome
MHENCR		217.3 kb	Distal	Multiome
STMN3		243.5 kb	Distal	Multiome
RTEL1		248.4 kb	Distal	Multiome
ARFRP1		298.0 kb	Distal	Multiome
ZGPAT		298.2 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

60 transcription factors

ChIP MCF-7_DMSO_45min GSE90550.AHR.MCF-7_DMSO_45min 65 bp overlap

ChIP LNCaP_G87R_shFOXA1_Ethanol GSE128883.AR.LNCaP_G87R_shFOXA1_Ethanol 70 bp overlap

ChIP VCaP GSE148358.AR.VCaP 75 bp overlap

ChIP MCF-7_Ctrl GSE85352.ARNT.MCF-7_Ctrl 68 bp overlap

ASH2L 1 dataset

ChIP WA01 ENCSR850KIP.ASH2L.WA01 117 bp overlap

ChIP HCT-116_CAMP GSE74355.ATF3.HCT-116_CAMP 67 bp overlap

BRD2 7 datasets

ChIP HCC1806_BAZ2B_JQ1 GSE116879.BRD2.HCC1806_BAZ2B_JQ1 124 bp overlap

ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 197 bp overlap

ChIP HCC1806_BAZ2BsiRNA GSE116879.BRD2.HCC1806_BAZ2BsiRNA 80 bp overlap

ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 138 bp overlap

ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 111 bp overlap

ChIP HCC1806_NTsiRNA_JQ1 GSE116879.BRD2.HCC1806_NTsiRNA_JQ1 123 bp overlap

ChIP SUM149PT_R_DMSO GSE131097.BRD2.SUM149PT_R_DMSO 141 bp overlap

BRD4 13 datasets

ChIP COLO-741 GSE73319.BRD4.COLO-741 65 bp overlap

ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 121 bp overlap

ChIP MCF-7_ARID1A-KO GSE123284.BRD4.MCF-7_ARID1A-KO 158 bp overlap

ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 124 bp overlap

ChIP MCF-7_ARID1A-KO_4-OHT GSE123284.BRD4.MCF-7_ARID1A-KO_4-OHT 180 bp overlap

ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 121 bp overlap

ChIP MCF-7_parental GSE123284.BRD4.MCF-7_parental 182 bp overlap

ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 103 bp overlap

ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.BRD4.MCF-7_parental_4-hydroxytamoxifen 180 bp overlap

ChIP SUM229PE_pos_DMSO_24h GSE87418.BRD4.SUM229PE_pos_DMSO_24h 86 bp overlap

ChIP VCaP GSE148358.BRD4.VCaP 114 bp overlap

ChIP hESC GSE33281.BRD4.hESC 61 bp overlap

ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 114 bp overlap

ChIP HCT-116_NOMO GSE38258.CDK8.HCT-116_NOMO 115 bp overlap

ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 113 bp overlap

DDX20 1 dataset

ChIP MCF-7 ENCSR330ADN.DDX20.MCF-7 196 bp overlap

E2F6 2 datasets

ChIP H1 ENCFF785DWK 187 bp overlap

ChIP WA01 ENCSR000BSI.E2F6.WA01 92 bp overlap

ELF1 4 datasets

ChIP MCF-7 ENCFF687CWI 225 bp overlap

ChIP MCF-7 ENCFF687CWI 361 bp overlap

ChIP MCF-7 ENCSR502NRF.ELF1.MCF-7 247 bp overlap

ChIP MCF-7 ENCSR000BSS.ELF1.MCF-7 174 bp overlap

ChIP VCaP_shARID1A GSE110655.ERG.VCaP_shARID1A 153 bp overlap

ESR1 2 datasets

ChIP T-47D_Y537S GSE148277.ESR1.T-47D_Y537S 52 bp overlap

ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 91 bp overlap

ChIP GM23338 ENCFF701IZH 305 bp overlap

ChIP MDA-Pca-2b GSE106624.ETV1.MDA-Pca-2b 114 bp overlap

ChIP SU-DHL-6 GSE134136.EZH2.SU-DHL-6 108 bp overlap

ChIP HCT-116_A7A GSE152144.FOS.HCT-116_A7A 159 bp overlap

FOXP1 1 dataset

ChIP WTC11 ENCFF338WGC 282 bp overlap

GABPA 24 datasets

ChIP A-549 ENCSR000BPY.GABPA.A-549 203 bp overlap

ChIP DU145 GSE59021.GABPA.DU145 58 bp overlap

ChIP H1 ENCFF739QFD 311 bp overlap

ChIP H1 ENCFF739QFD 322 bp overlap

ChIP Hep-G2 GSE72082.GABPA.Hep-G2 132 bp overlap

ChIP Hep-G2 ENCSR269TNX.GABPA.Hep-G2 133 bp overlap

ChIP Hep-G2 ENCSR000BJK.GABPA.Hep-G2 158 bp overlap

ChIP Hep-G2 GSE72082.GABPA.Hep-G2 149 bp overlap

ChIP HepG2 ENCFF180FFY 366 bp overlap

ChIP HepG2 ENCFF180FFY 376 bp overlap

ChIP HepG2 ENCFF467OEO 255 bp overlap

ChIP HepG2 ENCFF467OEO 301 bp overlap

ChIP K-562 ENCSR000BLO.GABPA.K-562 493 bp overlap

ChIP K562 ENCFF139LXS 493 bp overlap

ChIP K562 ENCFF996TSW 317 bp overlap

ChIP MCF-7 ENCFF735CHO 493 bp overlap

ChIP MCF-7 ENCFF951HFC 493 bp overlap

ChIP MCF-7 ENCFF951HFC 345 bp overlap

ChIP MCF-7 ENCSR000BUK.GABPA.MCF-7 493 bp overlap

ChIP VCaP GSE49091.GABPA.VCaP 481 bp overlap

ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 483 bp overlap

ChIP VCaP_R1881 GSE49091.GABPA.VCaP_R1881 493 bp overlap

ChIP WA01 ENCSR000BIW.GABPA.WA01 197 bp overlap

ChIP WA01 ENCSR000BIW.GABPA.WA01 158 bp overlap

GABPB1 2 datasets

ChIP HepG2 ENCFF315AWN 425 bp overlap

ChIP K-562 ENCSR138YYY.GABPB1.K-562 493 bp overlap

GRHL2 3 datasets

ChIP MCF-7 GSE109820.GRHL2.MCF-7 145 bp overlap

ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 456 bp overlap

ChIP T-47D GSE99680.GRHL2.T-47D 182 bp overlap

ChIP HEK293 ENCSR803GYT.HIC1.HEK293 119 bp overlap

KDM5B 1 dataset

ChIP MCF-7 GSE46055.KDM5B.MCF-7 86 bp overlap

ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 168 bp overlap

ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 160 bp overlap

ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 96 bp overlap

ChIP WTC11 ENCFF223QFY 331 bp overlap

ChIP MCF-7 ENCFF757JNN 224 bp overlap

MED26 2 datasets

ChIP HCT-116 GSE121355.MED26.HCT-116 220 bp overlap

ChIP HCT-116_aux GSE121355.MED26.HCT-116_aux 313 bp overlap

ChIP NCI-H2171 GSE36354.MYC.NCI-H2171 193 bp overlap

NELFE 2 datasets

ChIP HCT-116 GSE132705.NELFE.HCT-116 119 bp overlap

ChIP HCT-116_KAP1-KO GSE132705.NELFE.HCT-116_KAP1-KO 125 bp overlap

ChIP WTC11 ENCFF751ZTQ 232 bp overlap

NIPBL 2 datasets

ChIP HCT-116_RAD21-mAC GSE104888.NIPBL.HCT-116_RAD21-mAC 196 bp overlap

ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.NIPBL.HCT-116_RAD21-mAC_500uM_auxin 493 bp overlap

ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 201 bp overlap

PKNOX1 1 dataset

ChIP MCF-7 ENCSR986XYK.PKNOX1.MCF-7 316 bp overlap

POLR2A 6 datasets

ChIP H1 ENCFF566JSR 373 bp overlap

ChIP H1 ENCFF566JSR 418 bp overlap

ChIP HCT116 ENCFF508RDJ 207 bp overlap

ChIP HCT116 ENCFF849NGT 348 bp overlap

ChIP HCT116 ENCFF849NGT 426 bp overlap

ChIP MCF-7 ENCFF309IKZ 228 bp overlap

ChIP HCC70 GSE126380.RORC.HCC70 130 bp overlap

SMARCC1 1 dataset

ChIP Aska-SS GSE108025.SMARCC1.Aska-SS 93 bp overlap

ChIP WTC11 ENCFF688PEU 410 bp overlap

ChIP HEK293 ENCFF181QXT 176 bp overlap

ChIP HEK293 ENCSR807LQP.SP2.HEK293 493 bp overlap

ChIP HEK293 GSE76494.SP2.HEK293 198 bp overlap

ChIP HEK293T ERP007114.SP2.HEK293T 277 bp overlap

ChIP HEK293 ENCSR141PZA.SP3.HEK293 478 bp overlap

SREBP2 2 datasets

ChIP HCC70 GSE126380.SREBP2.HCC70 212 bp overlap

ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 102 bp overlap

ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 58 bp overlap

STAT1_pS727 1 dataset

ChIP SET-2 GSE100566.STAT1_pS727.SET-2 116 bp overlap

STAT3 4 datasets

ChIP MCF-7_jc5834 GSE126004.STAT3.MCF-7_jc5834 239 bp overlap

ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 134 bp overlap

ChIP T-47D_JC5054 GSE126004.STAT3.T-47D_JC5054 232 bp overlap

ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 232 bp overlap

SUPT5H 5 datasets

ChIP HCT-116_DMSO GSE138548.SUPT5H.HCT-116_DMSO 194 bp overlap

ChIP HCT-116_DMSO_pThr806 GSE138548.SUPT5H.HCT-116_DMSO_pThr806 139 bp overlap

ChIP HCT-116_Nut3 GSE138548.SUPT5H.HCT-116_Nut3 159 bp overlap

ChIP HCT-116_Nut3_pThr806 GSE138548.SUPT5H.HCT-116_Nut3_pThr806 148 bp overlap

ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 200 bp overlap

SUPT6H 2 datasets

ChIP HCT-116 GSE130509.SUPT6H.HCT-116 189 bp overlap

ChIP HCT-116 GSE130509.SUPT6H.HCT-116 165 bp overlap

TAF1 2 datasets

ChIP WA01 ENCSR000BHO.TAF1.WA01 148 bp overlap

ChIP WA01 ENCSR000BHO.TAF1.WA01 122 bp overlap

ChIP HCT-116 GSE43539.TAF3.HCT-116 168 bp overlap

ChIP WA01 ENCSR000ECB.TBP.WA01 124 bp overlap

ChIP WTC11 ENCFF139JAW 312 bp overlap

ChIP HCT-116 ENCSR000BNX.YY1.HCT-116 147 bp overlap

ChIP HCT116 ENCFF497ZQZ 231 bp overlap

ZBTB26 2 datasets

ChIP HEK293 ENCFF752POA 107 bp overlap

ChIP HEK293 ENCFF752TCU 96 bp overlap

ZBTB40 2 datasets

ChIP K-562 ENCSR237VLT.ZBTB40.K-562 354 bp overlap

ChIP MCF-7 ENCSR318LVG.ZBTB40.MCF-7 435 bp overlap

ZBTB48 1 dataset

ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 101 bp overlap

ChIP GM12878 ENCSR000BND.ZEB1.GM12878 175 bp overlap

ChIP HCT-116 ENCSR503GVO.ZFX.HCT-116 117 bp overlap

ChIP HCT-116 GSE102616.ZFX.HCT-116 118 bp overlap

ChIP HCT116 ENCFF324IZY 133 bp overlap

ZNF143 1 dataset

ChIP WA01 ENCSR000EBW.ZNF143.WA01 144 bp overlap

ZNF232 1 dataset

ChIP WTC11 ENCFF901BGD 421 bp overlap

ZNF75A 2 datasets

ChIP MCF-7 GSE97661.ZNF75A.MCF-7 185 bp overlap

ChIP MCF-7 GSE97661.ZNF75A.MCF-7 143 bp overlap

ZNF768 1 dataset

ChIP HepG2 ENCFF388QCK 57 bp overlap

ZSCAN4 1 dataset

ChIP HEK293 ENCFF381BKT 59 bp overlap