chr19 : 38,395,753 38,396,095
342 bp 84 TFs 3 linked genes
This 342 bp open chromatin element is linked to FAM98C, SPRED3, and GGN and is bound by 84 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
FAM98C 7.1 kb Proximal Proximity
SPRED3 7.3 kb Proximal Proximity
GGN 7.7 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr19:38,390,753 – 38,401,095
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
84 transcription factors
Source
Cell type
ARID1A 2 datasets
ChIP H9 GSE139260.ARID1A.H9 110 bp overlap
ChIP H9 GSE139260.ARID1A.H9 120 bp overlap
BCL6 1 dataset
ChIP CD4 GSE59933.BCL6.CD4 148 bp overlap
BCOR 1 dataset
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 232 bp overlap
BRD4 19 datasets
ChIP CD4_Th1_DMSO GSE62482.BRD4.CD4_Th1_DMSO 342 bp overlap
ChIP CLL_patient1 GSE109411.BRD4.CLL_patient1 94 bp overlap
ChIP CLL_patient1_4h_CpG GSE109411.BRD4.CLL_patient1_4h_CpG 91 bp overlap
ChIP CLL_patient1_4h_CpG_BET GSE109411.BRD4.CLL_patient1_4h_CpG_BET 250 bp overlap
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 342 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 282 bp overlap
ChIP Jurkat GSE83777.BRD4.Jurkat 342 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 342 bp overlap
ChIP MDA-MB-157 ERP003925.BRD4.MDA-MB-157 342 bp overlap
ChIP T-47D ERP003925.BRD4.T-47D 342 bp overlap
ChIP T-cell_DMSO GSE138084.BRD4.T-cell_DMSO 342 bp overlap
ChIP T-cell_iBET GSE138084.BRD4.T-cell_iBET 342 bp overlap
ChIP T-cell_iBET-BD1 GSE138084.BRD4.T-cell_iBET-BD1 271 bp overlap
ChIP T-cell_iBET-BD2 GSE138084.BRD4.T-cell_iBET-BD2 342 bp overlap
ChIP hESC GSE33281.BRD4.hESC 132 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
ChIP keratinocyte GSE140992.BRD4.keratinocyte 342 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 226 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 342 bp overlap
CBFB 2 datasets
ChIP ME-1 GSE46044.CBFB.ME-1 224 bp overlap
ChIP ME-1 GSE46044.CBFB.ME-1 59 bp overlap
CDK7 1 dataset
ChIP Jurkat GSE50622.CDK7.Jurkat 208 bp overlap
CHD1 1 dataset
ChIP hMSC-TERT GSE89179.CHD1.hMSC-TERT 215 bp overlap
CHD4 1 dataset
ChIP keratinocyte_CTR GSE139685.CHD4.keratinocyte_CTR 169 bp overlap
CTCF 2 datasets
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 310 bp overlap
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 295 bp overlap
CTCFL 3 datasets
ChIP K-562 GSE70764.CTCFL.K-562 156 bp overlap
ChIP K-562 GSE70764.CTCFL.K-562 96 bp overlap
ChIP delta-47 GSE70764.CTCFL.delta-47 204 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF335XTP 139 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 342 bp overlap
EGR1 3 datasets
ChIP GM12878 ENCFF092DJY 131 bp overlap
ChIP GM12878 ENCSR000BMQ.EGR1.GM12878 105 bp overlap
ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 278 bp overlap
ELF1 3 datasets
ChIP GM12878 ENCFF432UGA 256 bp overlap
ChIP GM12878 ENCSR000BMB.ELF1.GM12878 148 bp overlap
ChIP ME-1 GSE46044.ELF1.ME-1 170 bp overlap
ERG 6 datasets
ChIP AMLPZ12 GSE23730.ERG.AMLPZ12 240 bp overlap
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 342 bp overlap
ChIP K-562 GSE23730.ERG.K-562 342 bp overlap
ChIP K-562_DOX GSE23730.ERG.K-562_DOX 342 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 216 bp overlap
ChIP TSU-1621MT GSE60477.ERG.TSU-1621MT 91 bp overlap
ESR1 2 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 342 bp overlap
ChIP MCF-7_estradiol-aldosterone_45min GSE99626.ESR1.MCF-7_estradiol-aldosterone_45min 107 bp overlap
EZH2 5 datasets
ChIP GM23338 ENCFF613YON 219 bp overlap
ChIP THP-1 GSE135024.EZH2.THP-1 230 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 342 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 151 bp overlap
ChIP prostate-cancer_shEZH2 GSE107780.EZH2.prostate-cancer_shEZH2 93 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_heregulin GSE101407.FOXA1.breast-cancer_heregulin 282 bp overlap
GABPA 2 datasets
ChIP HepG2 ENCFF467OEO 208 bp overlap
ChIP WA01 ENCSR000BIW.GABPA.WA01 140 bp overlap
GATA3 1 dataset
ChIP Jurkat GSE120063.GATA3.Jurkat 199 bp overlap
HDAC6 2 datasets
ChIP GM12878 ENCFF918SGD 342 bp overlap
ChIP GM12878 ENCSR933EYC.HDAC6.GM12878 342 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 227 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 342 bp overlap
HMGB1 1 dataset
ChIP HUVEC-C GSE98245.HMGB1.HUVEC-C 279 bp overlap
HNRNPL 2 datasets
ChIP K-562 GSE120104.HNRNPL.K-562 122 bp overlap
ChIP K-562 ENCSR594BNR.HNRNPL.K-562 122 bp overlap
HNRNPLL 4 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 240 bp overlap
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 240 bp overlap
ChIP HepG2 ENCFF355PIC 342 bp overlap
ChIP HepG2 ENCFF952XAB 342 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 139 bp overlap
INO80 1 dataset
ChIP Hep-G2 GSE107730.INO80.Hep-G2 342 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 74 bp overlap
KDM4A 2 datasets
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 211 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 305 bp overlap
KLF1 1 dataset
ChIP HUDEP-2_S4 GSE97671.KLF1.HUDEP-2_S4 149 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 342 bp overlap
LMO2 1 dataset
ChIP CCRF-CEM GSE33850.LMO2.CCRF-CEM 52 bp overlap
MAF 2 datasets
ChIP CD4_TH2 GSE72266.MAF.CD4_TH2 288 bp overlap
ChIP CD4_Th1 GSE72266.MAF.CD4_Th1 342 bp overlap
MAX 2 datasets
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 229 bp overlap
ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 250 bp overlap
MBD2 1 dataset
ChIP HeLa GSE41006.MBD2.HeLa 342 bp overlap
MBD3 1 dataset
ChIP MCF-7 GSE44737.MBD3.MCF-7 172 bp overlap
MED1 1 dataset
ChIP HUVEC-C_siERG GSE124892.MED1.HUVEC-C_siERG 342 bp overlap
MITF 3 datasets
ChIP 501-mel_20ng_K243R GSE137522.MITF.501-mel_20ng_K243R 148 bp overlap
ChIP 501-mel_K243R GSE137522.MITF.501-mel_K243R 127 bp overlap
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 261 bp overlap
MYB 1 dataset
ChIP Jurkat GSE59657.MYB.Jurkat 257 bp overlap
MYC 2 datasets
ChIP CD34 GSE85488.MYC.CD34 113 bp overlap
ChIP Jurkat GSE83777.MYC.Jurkat 183 bp overlap
MYOCD 1 dataset
ChIP A-549 GSE128921.MYOCD.A-549 342 bp overlap
NANOG 2 datasets
ChIP WA01 ERP004238.NANOG.WA01 181 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 212 bp overlap
NCAPH2 3 datasets
ChIP HEK293 GSE97540.NCAPH2.HEK293 151 bp overlap
ChIP IMR-90_Bethyl275_OIS GSE118494.NCAPH2.IMR-90_Bethyl275_OIS 342 bp overlap
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 342 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 342 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 342 bp overlap
NRF1 1 dataset
ChIP HMEC-1 GSE67867.NRF1.HMEC-1 232 bp overlap
PAX5 2 datasets
ChIP GM12878 ENCSR000BHD.PAX5.GM12878 109 bp overlap
ChIP GM12892 ENCSR000BJI.PAX5.GM12892 342 bp overlap
PLAG1 1 dataset
ChIP K-562 GSE111469.PLAG1.K-562 236 bp overlap
POLR2A 9 datasets
ChIP GM12892 ENCFF245LYF 342 bp overlap
ChIP GM12892 ENCFF506PGQ 143 bp overlap
ChIP GM12892 ENCFF542ZFO 342 bp overlap
ChIP GM15510 ENCFF880HVJ 162 bp overlap
ChIP GM18951 ENCFF079KKO 342 bp overlap
ChIP esophagus squamous epithelium ENCFF708IOX 342 bp overlap
ChIP esophagus squamous epithelium ENCFF708IOX 227 bp overlap
ChIP spleen ENCFF706IUS 240 bp overlap
ChIP upper lobe of left lung ENCFF640VPA 342 bp overlap
POU5F1 4 datasets
ChIP BJ1-hTERT GSE92491.POU5F1.BJ1-hTERT 212 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 263 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 129 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 342 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 342 bp overlap
REST 1 dataset
ChIP CD4 GSE49570.REST.CD4 71 bp overlap
RNF2 1 dataset
ChIP WA09 GSE105028.RNF2.WA09 270 bp overlap
RORC 1 dataset
ChIP HCC70 GSE126380.RORC.HCC70 342 bp overlap
RUNX1 3 datasets
ChIP Jurkat GSE76181.RUNX1.Jurkat 201 bp overlap
ChIP ME-1 GSE46044.RUNX1.ME-1 213 bp overlap
ChIP SKNO-1 GSE23730.RUNX1.SKNO-1 130 bp overlap
RXR 2 datasets
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 105 bp overlap
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 55 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 264 bp overlap
SMC1 1 dataset
ChIP DKO GSE131606.SMC1.DKO 200 bp overlap
SMC1A 3 datasets
ChIP primary-epidermal-keratinocyte GSE85526.SMC1A.primary-epidermal-keratinocyte 150 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d0 298 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d3 274 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 342 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 342 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 205 bp overlap
STAT5B 2 datasets
ChIP CD8_H9 GSE64713.STAT5B.CD8_H9 269 bp overlap
ChIP CD8_IL2 GSE64713.STAT5B.CD8_IL2 231 bp overlap
SUPT5H 1 dataset
ChIP U2OS_siMYC GSE115365.SUPT5H.U2OS_siMYC 103 bp overlap
SUZ12 1 dataset
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 342 bp overlap
TAL1 1 dataset
ChIP ME-1 GSE46044.TAL1.ME-1 129 bp overlap
TBX21 1 dataset
ChIP Th1_CD3-CD28_donor2 GSE81881.TBX21.Th1_CD3-CD28_donor2 159 bp overlap
TCF7 1 dataset
ChIP breast-organoid_BRCA2-mut GSE113909.TCF7.breast-organoid_BRCA2-mut 335 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 252 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 331 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 342 bp overlap
TRIM28 1 dataset
ChIP HCT-116 GSE72622.TRIM28.HCT-116 146 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 342 bp overlap
YY1 1 dataset
ChIP GM12892 ENCSR000BLT.YY1.GM12892 155 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_CSS GSE123089.ZBTB7A.VCaP_CSS 62 bp overlap
ZFP57 1 dataset
ChIP hESC GSE115387.ZFP57.hESC 342 bp overlap
ZFX 1 dataset
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 342 bp overlap
ZNF2 1 dataset
ChIP HEK293T GSE78099.ZNF2.HEK293T 333 bp overlap
ZNF445 1 dataset
ChIP HEK293T GSE78099.ZNF445.HEK293T 342 bp overlap
ZNF57 1 dataset
ChIP BG01V GSE97403.ZNF57.BG01V 183 bp overlap
ZNF605 1 dataset
ChIP HEK293T GSE78099.ZNF605.HEK293T 268 bp overlap