chr18 : 55,779,266 – 55,779,386
120 bp 64 TFs 1 linked gene
This 120 bp open chromatin element is linked to LINC01415 and is bound by 64 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
LINC01415 1.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:55,774,266 – 55,784,386
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
64 transcription factors
Source
Cell type
BCOR 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 66 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 64 bp overlap
BMI1 1 dataset
ChIP GM12878 ENCSR469WII.BMI1.GM12878 120 bp overlap
BRD2 2 datasets
ChIP MDA-MB-231_BAZ2AsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA 120 bp overlap
ChIP SK-MEL-147 GSE94488.BRD2.SK-MEL-147 119 bp overlap
BRD3 3 datasets
ChIP HEK293T GSE39579.BRD3.HEK293T 85 bp overlap
ChIP K-562_DMSO-IFNG GSE138084.BRD3.K-562_DMSO-IFNG 120 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD3.K-562_iBET-BD1-IFNG 71 bp overlap
BRD4 13 datasets
ChIP CLL_patient1_4h_CpG_BET GSE109411.BRD4.CLL_patient1_4h_CpG_BET 120 bp overlap
ChIP CLL_patient4_4h_CpG_BET GSE109411.BRD4.CLL_patient4_4h_CpG_BET 120 bp overlap
ChIP HEK293T GSE39579.BRD4.HEK293T 92 bp overlap
ChIP K-562_iBET-BD1-IFNG GSE138084.BRD4.K-562_iBET-BD1-IFNG 56 bp overlap
ChIP K-562_iBET-BD2-IFNG GSE138084.BRD4.K-562_iBET-BD2-IFNG 120 bp overlap
ChIP K-562_iBET-IFNG GSE138084.BRD4.K-562_iBET-IFNG 120 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 120 bp overlap
ChIP MM1-S GSE43743.BRD4.MM1-S 120 bp overlap
ChIP MM1-S_DMSO GSE42161.BRD4.MM1-S_DMSO 103 bp overlap
ChIP MM1-S_JQ1_5UM GSE42355.BRD4.MM1-S_JQ1_5UM 87 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 120 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 93 bp overlap
ChIP SUM159PT_KO GSE131097.BRD4.SUM159PT_KO 120 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 95 bp overlap
CDK9 2 datasets
ChIP Kelly_CYC065 GSE107126.CDK9.Kelly_CYC065 120 bp overlap
ChIP Kelly_DMSO GSE107126.CDK9.Kelly_DMSO 120 bp overlap
CTCF 3 datasets
ChIP dorsolateral prefrontal cortex ENCFF696ASB 120 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF696ASB 70 bp overlap
ChIP nerve_tibial ENCSR434XLP.CTCF.nerve_tibial 120 bp overlap
CTNNB1 1 dataset
ChIP hiPSC_D2 GSE132532.CTNNB1.hiPSC_D2 54 bp overlap
EGR1 1 dataset
ChIP macrophage_D4 GSE136216.EGR1.macrophage_D4 120 bp overlap
EP300 1 dataset
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 120 bp overlap
EZH2 1 dataset
ChIP peripheral-blood-mononuclear-cell_mut GSE115772.EZH2.peripheral-blood-mononuclear-cell_mut 110 bp overlap
EZH2_phosphoT487 1 dataset
ChIP OCI-Ly7 ENCSR565XSL.EZH2_phosphoT487.OCI-Ly7 92 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 113 bp overlap
GATA2 2 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 120 bp overlap
ChIP SKH1 GSE87283.GATA2.SKH1 120 bp overlap
GATA6 4 datasets
ChIP DE_D1 S09-DE-d1-GATA6-exp1 120 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 120 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 120 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 120 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 120 bp overlap
HDAC1 1 dataset
ChIP K-562 ENCSR387UWP.HDAC1.K-562 120 bp overlap
IKZF1 1 dataset
ChIP pre-B-cell GSE107886.IKZF1.pre-B-cell 120 bp overlap
IKZF3 1 dataset
ChIP pre-B-cell GSE107886.IKZF3.pre-B-cell 120 bp overlap
IRF1 1 dataset
ChIP K-562 ENCSR854MCV.IRF1.K-562 120 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 120 bp overlap
JUN 3 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 120 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 120 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 120 bp overlap
KMT2A 2 datasets
ChIP MOLM-13_CBS79-KO GSE114981.KMT2A.MOLM-13_CBS79-KO 96 bp overlap
ChIP blood_cord GSE83671.KMT2A.blood_cord 120 bp overlap
L3MBTL2 1 dataset
ChIP K-562 ENCSR530XQI.L3MBTL2.K-562 118 bp overlap
MED1 2 datasets
ChIP MM1-S_JQ1_5NM GSE49224.MED1.MM1-S_JQ1_5NM 106 bp overlap
ChIP hESC_PRIMED GSE69646.MED1.hESC_PRIMED 120 bp overlap
MEN1 1 dataset
ChIP ML-2 GSE95511.MEN1.ML-2 120 bp overlap
MLLT1_FKB 1 dataset
ChIP MV4-11 GSE82116.MLLT1_FKB.MV4-11 59 bp overlap
MYC 1 dataset
ChIP SK-N-AS GSE138295.MYC.SK-N-AS 120 bp overlap
MYCN 2 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 120 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 117 bp overlap
NANOG 1 dataset
ChIP WA09 GSE105028.NANOG.WA09 87 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_Veh_IA1 GSE125623.NR3C1.BEAS-2B_Veh_IA1 89 bp overlap
PAX5 1 dataset
ChIP NALM-6 GSE115764.PAX5.NALM-6 120 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 58 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 120 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 120 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 74 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 120 bp overlap
RAD21 2 datasets
ChIP liver ENCFF485PAC 89 bp overlap
ChIP liver ENCFF522JHE 52 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 120 bp overlap
RNF2 3 datasets
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 52 bp overlap
ChIP K-562 ENCSR820GND.RNF2.K-562 120 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 120 bp overlap
RUNX1 2 datasets
ChIP BCP-ALL_patient1 GSE109377.RUNX1.BCP-ALL_patient1 113 bp overlap
ChIP NALM-6 GSE126300.RUNX1.NALM-6 73 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 120 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 69 bp overlap
SIN3A 1 dataset
ChIP SK-N-SH ENCSR000BPB.SIN3A.SK-N-SH 95 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 120 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 120 bp overlap
SMAD2_3 4 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 120 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 120 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 120 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 120 bp overlap
SMARCA4 1 dataset
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 120 bp overlap
SMARCB1 1 dataset
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 108 bp overlap
SMARCC1 5 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 120 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 120 bp overlap
ChIP ESC S25-ESC-d0-BAF155-exp1 120 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 120 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 120 bp overlap
SOX2 1 dataset
ChIP HNSC GSE69479.SOX2.HNSC 83 bp overlap
SREBP2 2 datasets
ChIP monocyte GSE129202.SREBP2.monocyte 65 bp overlap
ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 57 bp overlap
STAG2 1 dataset
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 87 bp overlap
STAT3 1 dataset
ChIP monocyte_IFNg GSE120943.STAT3.monocyte_IFNg 120 bp overlap
SUZ12 1 dataset
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 94 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 107 bp overlap
TCF3 1 dataset
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 115 bp overlap
VEZF1 2 datasets
ChIP K-562 ENCSR189YMA.VEZF1.K-562 89 bp overlap
ChIP K562 ENCFF053XDV 120 bp overlap
YY1 1 dataset
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 101 bp overlap
ZBTB40 1 dataset
ChIP K-562 ENCSR237VLT.ZBTB40.K-562 67 bp overlap
ZBTB7A 1 dataset
ChIP K-562 GSE103445.ZBTB7A.K-562 75 bp overlap
ZNF148 2 datasets
ChIP K-562 ENCSR018MSO.ZNF148.K-562 59 bp overlap
ChIP K562 ENCFF352SDL 120 bp overlap
ZNF257 1 dataset
ChIP HEK293T GSE78099.ZNF257.HEK293T 111 bp overlap
ZNF281 1 dataset
ChIP K562 ENCFF594VNM 78 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 120 bp overlap
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