chr18 : 55,095,659 55,096,016
357 bp 76 TFs 0 linked genes
This 357 bp open chromatin element has no linked target genes and is bound by 76 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr18:55,090,659 – 55,101,016
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
76 transcription factors
Source
Cell type
AR 14 datasets
ChIP LNCaP GSE110655.AR.LNCaP 211 bp overlap
ChIP LNCaP GSE94682.AR.LNCaP 175 bp overlap
ChIP LNCaP-95_NT GSE125552.AR.LNCaP-95_NT 261 bp overlap
ChIP LNCaP_Bag-1L_WT GSE89938.AR.LNCaP_Bag-1L_WT 191 bp overlap
ChIP LNCaP_Bag-1L_WT_DHT GSE89938.AR.LNCaP_Bag-1L_WT_DHT 209 bp overlap
ChIP LNCaP_DHT_Bag-1L-CMut GSE89938.AR.LNCaP_DHT_Bag-1L-CMut 194 bp overlap
ChIP LNCaP_G87R_shFOXA1_Ethanol GSE128883.AR.LNCaP_G87R_shFOXA1_Ethanol 151 bp overlap
ChIP LNCaP_M253K_shFOXA1_Ethanol GSE128883.AR.LNCaP_M253K_shFOXA1_Ethanol 179 bp overlap
ChIP LNCaP_R1881 GSE69043.AR.LNCaP_R1881 195 bp overlap
ChIP LNCaP_SHGATA2_ETOH GSE69043.AR.LNCaP_SHGATA2_ETOH 121 bp overlap
ChIP LNCaP_androgen-N_hypoxia-N GSE114732.AR.LNCaP_androgen-N_hypoxia-N 221 bp overlap
ChIP LNCaP_androgen-N_hypoxia-Y GSE114732.AR.LNCaP_androgen-N_hypoxia-Y 163 bp overlap
ChIP LNCaP_r1881 GSE94682.AR.LNCaP_r1881 201 bp overlap
ChIP breast-cancer_ENOB-2854 GSE128018.AR.breast-cancer_ENOB-2854 354 bp overlap
ARID1A 1 dataset
ChIP LNCaP_r1881 GSE94682.ARID1A.LNCaP_r1881 239 bp overlap
ASXL3 2 datasets
ChIP NCI-H1963_Ab1 GSE145028.ASXL3.NCI-H1963_Ab1 342 bp overlap
ChIP NCI-H1963_Ab2 GSE145028.ASXL3.NCI-H1963_Ab2 240 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 235 bp overlap
BRD4 3 datasets
ChIP CLL_patient4 GSE109411.BRD4.CLL_patient4 357 bp overlap
ChIP COLO-320 GSE73319.BRD4.COLO-320 152 bp overlap
ChIP MDA-MB-231_JQ1-neg_S_3f GSE136151.BRD4.MDA-MB-231_JQ1-neg_S_3f 60 bp overlap
CDX2 1 dataset
ChIP LS180_125 GSE31939.CDX2.LS180_125 165 bp overlap
CTCF 6 datasets
ChIP HCT-116 GSE131606.CTCF.HCT-116 82 bp overlap
ChIP OCI-Ly3 ENCSR756ZKG.CTCF.OCI-Ly3 75 bp overlap
ChIP hESC_D7 GSE116862.CTCF.hESC_D7 197 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 352 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 63 bp overlap
ChIP thyroid gland ENCFF163TUI 83 bp overlap
EP300 2 datasets
ChIP Ishikawa ENCSR000BUE.EP300.Ishikawa 141 bp overlap
ChIP neural ENCSR843ZUP.EP300.neural 357 bp overlap
ESR1 10 datasets
ChIP Ishikawa_C1-12 GSE147141.ESR1.Ishikawa_C1-12 267 bp overlap
ChIP Ishikawa_C1-5 GSE147141.ESR1.Ishikawa_C1-5 210 bp overlap
ChIP Ishikawa_C2-3 GSE147141.ESR1.Ishikawa_C2-3 270 bp overlap
ChIP Ishikawa_E2 GSE132426.ESR1.Ishikawa_E2 208 bp overlap
ChIP Ishikawa_E2_D538G GSE132426.ESR1.Ishikawa_E2_D538G 201 bp overlap
ChIP Ishikawa_E2_D538G_clone2 GSE132426.ESR1.Ishikawa_E2_D538G_clone2 189 bp overlap
ChIP Ishikawa_E2_clone2 GSE132426.ESR1.Ishikawa_E2_clone2 206 bp overlap
ChIP Ishikawa_M1-9-1 GSE147141.ESR1.Ishikawa_M1-9-1 235 bp overlap
ChIP Ishikawa_M2-3 GSE147141.ESR1.Ishikawa_M2-3 207 bp overlap
ChIP Ishikawa_M2-5 GSE147141.ESR1.Ishikawa_M2-5 200 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 282 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 336 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 114 bp overlap
FOXA1 33 datasets
ChIP 22Rv1_CST_Crispr-70 GSE123618.FOXA1.22Rv1_CST_Crispr-70 209 bp overlap
ChIP HEK293_eGFP_TFS GSE123618.FOXA1.HEK293_eGFP_TFS 183 bp overlap
ChIP Ishikawa ENCSR000BKW.FOXA1.Ishikawa 135 bp overlap
ChIP LNCaP GSE52725.FOXA1.LNCaP 136 bp overlap
ChIP LNCaP_DHT GSE28264.FOXA1.LNCaP_DHT 112 bp overlap
ChIP LNCaP_ETOH24H GSE58428.FOXA1.LNCaP_ETOH24H 196 bp overlap
ChIP LNCaP_VEH GSE114266.FOXA1.LNCaP_VEH 143 bp overlap
ChIP MCF-7 GSE59530.FOXA1.MCF-7 65 bp overlap
ChIP MCF-7 ERP001226.FOXA1.MCF-7 79 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 133 bp overlap
ChIP MCF-7_E2 GSE59530.FOXA1.MCF-7_E2 83 bp overlap
ChIP MCF-7_E2_TNF GSE59530.FOXA1.MCF-7_E2_TNF 155 bp overlap
ChIP MCF-7_JC4690 GSE126004.FOXA1.MCF-7_JC4690 182 bp overlap
ChIP MCF-7_JC4693 GSE126004.FOXA1.MCF-7_JC4693 192 bp overlap
ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 185 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 124 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 162 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 211 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 192 bp overlap
ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 132 bp overlap
ChIP T-47D_JC4743 GSE126004.FOXA1.T-47D_JC4743 195 bp overlap
ChIP T-47D_JC4745 GSE126004.FOXA1.T-47D_JC4745 131 bp overlap
ChIP T-47D_flp-ctrl GSE99479.FOXA1.T-47D_flp-ctrl 166 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 144 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 138 bp overlap
ChIP ZR-75-1_estrogen_ab2 GSE112969.FOXA1.ZR-75-1_estrogen_ab2 168 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 178 bp overlap
ChIP breast-cancer_ENOB-2848 GSE128018.FOXA1.breast-cancer_ENOB-2848 228 bp overlap
ChIP breast-cancer_ENOB-2849 GSE128018.FOXA1.breast-cancer_ENOB-2849 218 bp overlap
ChIP breast-cancer_ENOB-2852 GSE128018.FOXA1.breast-cancer_ENOB-2852 202 bp overlap
ChIP breast-cancer_Veh-2858 GSE128018.FOXA1.breast-cancer_Veh-2858 357 bp overlap
ChIP breast-cancer_Veh-2860 GSE128018.FOXA1.breast-cancer_Veh-2860 357 bp overlap
ChIP breast_tumor_Male_19 GSE104399.FOXA1.breast_tumor_Male_19 265 bp overlap
FOXA2 3 datasets
ChIP Caco-2 GSE66218.FOXA2.Caco-2 169 bp overlap
ChIP DE DE-FOXA2-1 357 bp overlap
ChIP DE DE-FOXA2-2 340 bp overlap
GATA2 4 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 316 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 316 bp overlap
ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 239 bp overlap
ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 173 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 357 bp overlap
ChIP DE DE-GATA4-2 357 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 357 bp overlap
ChIP foregut GSE117136.GATA4.foregut 357 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 357 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 246 bp overlap
GATA6 11 datasets
ChIP DE DE-GATA6-1 357 bp overlap
ChIP DE DE-GATA6-2 326 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 357 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 357 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 357 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 308 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 357 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 357 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 316 bp overlap
ChIP foregut GSE117136.GATA6.foregut 271 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 323 bp overlap
GFI1B 2 datasets
ChIP HEK293 ENCFF264FBS 210 bp overlap
ChIP HEK293 ENCSR445PDR.GFI1B.HEK293 191 bp overlap
HIC1 2 datasets
ChIP HEK293 ENCFF252CFL 357 bp overlap
ChIP HEK293 ENCSR803GYT.HIC1.HEK293 294 bp overlap
IKZF3 2 datasets
ChIP HEK293 ENCFF518OXG 261 bp overlap
ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 177 bp overlap
KLF3 1 dataset
ChIP HEK293 GSE69739.KLF3.HEK293 248 bp overlap
KLF8 2 datasets
ChIP HEK293 ENCFF929IAJ 303 bp overlap
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 229 bp overlap
MAX 1 dataset
ChIP NCI-H2171 GSE36354.MAX.NCI-H2171 206 bp overlap
MXI1 2 datasets
ChIP neural ENCSR934NHU.MXI1.neural 357 bp overlap
ChIP neural cell ENCFF623HQN 333 bp overlap
MYC 1 dataset
ChIP LS174T_BI8622 GSE59223.MYC.LS174T_BI8622 110 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 181 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 194 bp overlap
NELFCD 1 dataset
ChIP DLD-1_NELFCD-AID GSE144786.NELFCD.DLD-1_NELFCD-AID 85 bp overlap
NFIC 1 dataset
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 135 bp overlap
NIPBL 1 dataset
ChIP GP5D GSE51234.NIPBL.GP5D 268 bp overlap
NKX3-1 2 datasets
ChIP LNCaP_DHT GSE28264.NKX3-1.LNCaP_DHT 163 bp overlap
ChIP LNCaP_ETOH GSE28264.NKX3-1.LNCaP_ETOH 173 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 199 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 357 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 239 bp overlap
PDX1 1 dataset
ChIP pancreatic-progenitor GSE117136.PDX1.pancreatic-progenitor 231 bp overlap
POU2F1 1 dataset
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 238 bp overlap
POU5F1 1 dataset
ChIP OSKM GSE81899.POU5F1.OSKM 143 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 264 bp overlap
PRDM6 3 datasets
ChIP HEK293 ENCFF283AJL 306 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 325 bp overlap
ChIP HEK293 GSE76494.PRDM6.HEK293 152 bp overlap
REST 1 dataset
ChIP neural ENCSR000BTV.REST.neural 231 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 232 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 267 bp overlap
SP7 2 datasets
ChIP HEK293 ENCFF733RBE 264 bp overlap
ChIP HEK293 ENCSR468IJT.SP7.HEK293 357 bp overlap
SS18 1 dataset
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 357 bp overlap
STAT3 2 datasets
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 180 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 242 bp overlap
SUPT5H 3 datasets
ChIP DLD-1_NELFCD-AID GSE144786.SUPT5H.DLD-1_NELFCD-AID 337 bp overlap
ChIP DLD-1_NELFCD-AID_treated GSE144786.SUPT5H.DLD-1_NELFCD-AID_treated 357 bp overlap
ChIP DLD-1_NELFE-AID GSE144786.SUPT5H.DLD-1_NELFE-AID 70 bp overlap
TCF12 1 dataset
ChIP Ishikawa ENCSR000BUV.TCF12.Ishikawa 219 bp overlap
TCF7L2 2 datasets
ChIP HEK293 ENCFF513JQN 357 bp overlap
ChIP HEK293 ENCSR000EUY.TCF7L2.HEK293 298 bp overlap
TEAD4 1 dataset
ChIP Ishikawa ENCSR000BSW.TEAD4.Ishikawa 107 bp overlap
TLE3 2 datasets
ChIP LNCaP GSE94682.TLE3.LNCaP 288 bp overlap
ChIP LNCaP_r1881 GSE94682.TLE3.LNCaP_r1881 277 bp overlap
TRIM28 4 datasets
ChIP HEK293 ENCFF265CEM 356 bp overlap
ChIP HEK293 ENCSR000EUZ.TRIM28.HEK293 241 bp overlap
ChIP HEK293 ENCSR618HNF.TRIM28.HEK293 357 bp overlap
ChIP U2OS ENCSR000EYC.TRIM28.U2OS 357 bp overlap
WT1 2 datasets
ChIP HEK293 ENCFF906HIR 296 bp overlap
ChIP HEK293 ENCSR966PJJ.WT1.HEK293 232 bp overlap
YY2 1 dataset
ChIP HEK293 ENCSR692HSE.YY2.HEK293 182 bp overlap
ZBTB42 1 dataset
ChIP HEK293 GSE76494.ZBTB42.HEK293 125 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 357 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 281 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 239 bp overlap
ZNF19 1 dataset
ChIP HEK293T GSE78099.ZNF19.HEK293T 262 bp overlap
ZNF24 1 dataset
ChIP HEK293 ENCSR984MDV.ZNF24.HEK293 253 bp overlap
ZNF263 1 dataset
ChIP HEK293 ENCFF336CWQ 357 bp overlap
ZNF335 2 datasets
ChIP HEK293 ENCFF784SLD 269 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 357 bp overlap
ZNF35 1 dataset
ChIP HEK293 GSE76494.ZNF35.HEK293 118 bp overlap
ZNF513 1 dataset
ChIP HEK293 ENCFF457TCC 357 bp overlap
ZNF528 1 dataset
ChIP HEK293 GSE76494.ZNF528.HEK293 119 bp overlap
ZNF574 1 dataset
ChIP HEK293 GSE76494.ZNF574.HEK293 132 bp overlap
ZNF629 2 datasets
ChIP HEK293 ENCFF096ELQ 297 bp overlap
ChIP HEK293 ENCSR351NON.ZNF629.HEK293 357 bp overlap
ZNF843 2 datasets
ChIP HEK293 ENCFF241QRH 166 bp overlap
ChIP HEK293 ENCSR502KPJ.ZNF843.HEK293 357 bp overlap