chr16 : 31,568,681 31,569,705
1,024 bp 77 TFs 1 linked gene
This 1.0 kb open chromatin element is linked to YBX3P1 and is bound by 77 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
YBX3P1 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr16:31,563,681 – 31,574,705
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
77 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP MCF-7_aza GSE85352.ARNT.MCF-7_aza 320 bp overlap
BCL11A 7 datasets
ChIP CD34_Day3_30min GSE104676.BCL11A.CD34_Day3_30min 63 bp overlap
ChIP CD34_Day5_30min GSE104676.BCL11A.CD34_Day5_30min 104 bp overlap
ChIP CD34_Day7_60min GSE104676.BCL11A.CD34_Day7_60min 82 bp overlap
ChIP CD34_Day7_90min GSE104676.BCL11A.CD34_Day7_90min 66 bp overlap
ChIP CD34_Day9_30min GSE104676.BCL11A.CD34_Day9_30min 121 bp overlap
ChIP CD34_Day9_60min GSE104676.BCL11A.CD34_Day9_60min 91 bp overlap
ChIP CD34_Day9_90min GSE104676.BCL11A.CD34_Day9_90min 92 bp overlap
BCOR 2 datasets
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 330 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 392 bp overlap
BRD4 3 datasets
ChIP MCF-10A ERP003925.BRD4.MCF-10A 265 bp overlap
ChIP MPNST_PDJQ GSE62499.BRD4.MPNST_PDJQ 51 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 204 bp overlap
CDK9 1 dataset
ChIP HCT-116 GSE72622.CDK9.HCT-116 182 bp overlap
CREB1 1 dataset
ChIP WA01 ENCSR000BSN.CREB1.WA01 151 bp overlap
CREB3L1 1 dataset
Motif DE_48h DE_48h-CREB3L1_MA0839.2 13 bp overlap
CTCF 59 datasets
ChIP 22Rv1 ENCFF466OXN 634 bp overlap
ChIP 22Rv1 ENCFF466OXN 681 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 337 bp overlap
Motif DE_48h DE_48h-CTCF_MA0139.2 15 bp overlap
ChIP GM23338 ENCFF531QOI 425 bp overlap
ChIP GM23338 ENCFF772DML 111 bp overlap
ChIP H1 ENCFF230QSV 165 bp overlap
ChIP H1 ENCFF764RHO 277 bp overlap
ChIP H9 ENCFF152GTF 461 bp overlap
ChIP HSPC-CD34 GSE107147.CTCF.HSPC-CD34 95 bp overlap
ChIP IMR-90 GSE43070.CTCF.IMR-90 158 bp overlap
ChIP K-562 GSE70764.CTCF.K-562 194 bp overlap
ChIP K-562 ENCSR000DMA.CTCF.K-562 163 bp overlap
ChIP K-562 ENCSR000BPJ.CTCF.K-562 140 bp overlap
ChIP K-562 ENCSR000EGM.CTCF.K-562 170 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 247 bp overlap
ChIP K562 ENCFF082GOI 185 bp overlap
ChIP K562 ENCFF400DFR 241 bp overlap
ChIP K562 ENCFF430KTH 425 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 119 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 128 bp overlap
ChIP brain ENCFF163BBN 591 bp overlap
ChIP choroid plexus epithelial cell ENCFF407YNR 277 bp overlap
ChIP erythroblast_adult_erythroblasts GSE102184.CTCF.erythroblast_adult_erythroblasts 301 bp overlap
ChIP erythroid GSE67783.CTCF.erythroid 376 bp overlap
ChIP erythroid_Don001 GSE137982.CTCF.erythroid_Don001 246 bp overlap
ChIP fetal_erythroblasts GSE102184.CTCF.fetal_erythroblasts 305 bp overlap
ChIP gastroesophageal sphincter ENCFF546QIK 457 bp overlap
ChIP gastroesophageal sphincter ENCFF607YRA 445 bp overlap
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 226 bp overlap
ChIP hESC_NAIVE GSE69646.CTCF.hESC_NAIVE 317 bp overlap
ChIP heart left ventricle ENCFF842XRG 411 bp overlap
ChIP heart right ventricle ENCFF435TKW 431 bp overlap
ChIP heart right ventricle ENCFF767XJQ 457 bp overlap
ChIP hepatocyte ENCFF263BLJ 345 bp overlap
ChIP hepatocyte ENCSR252QYR.CTCF.hepatocyte 157 bp overlap
ChIP hiPSC_CVI GSE106870.CTCF.hiPSC_CVI 180 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 172 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 147 bp overlap
ChIP hiPSC_IIA11 GSE106870.CTCF.hiPSC_IIA11 223 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 184 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 179 bp overlap
ChIP keratinocyte ENCFF291YDC 185 bp overlap
ChIP keratinocyte ENCSR000DNC.CTCF.keratinocyte 168 bp overlap
ChIP leukemia GSE142161.CTCF.leukemia 302 bp overlap
ChIP leukemia_CEBPA-24h GSE142161.CTCF.leukemia_CEBPA-24h 253 bp overlap
ChIP leukemia_CEBPA-96h GSE142161.CTCF.leukemia_CEBPA-96h 335 bp overlap
ChIP lower lobe of right lung ENCFF092XHT 457 bp overlap
ChIP lung ENCFF936XRK 217 bp overlap
ChIP lung_left_upper-lobe ENCSR972LYL.CTCF.lung_left_upper-lobe 209 bp overlap
ChIP neural progenitor cell ENCFF420RBO 411 bp overlap
ChIP neural_progenitor ENCSR125NBL.CTCF.neural_progenitor 206 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 151 bp overlap
ChIP pancreas ENCSR000DND.CTCF.pancreas 110 bp overlap
ChIP spleen ENCFF604DQF 211 bp overlap
ChIP stomach ENCFF370OWL 417 bp overlap
ChIP stomach ENCSR173AIR.CTCF.stomach 249 bp overlap
ChIP upper lobe of left lung ENCFF108BCY 421 bp overlap
ChIP upper lobe of left lung ENCFF277NLT 431 bp overlap
CTCFL 1 dataset
ChIP delta-47 GSE70764.CTCFL.delta-47 188 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF364PUR 329 bp overlap
DMRTA2 1 dataset
Motif DE_48h DE_48h-DMRTA2_MA1478.2 6 bp overlap
E2F1 1 dataset
Motif DE_48h DE_48h-E2F1_MA0024.3 12 bp overlap
E2F2 1 dataset
Motif DE_48h DE_48h-E2F2_MA0864.3 13 bp overlap
E2F4 1 dataset
Motif DE_48h DE_48h-E2F4_MA0470.3 13 bp overlap
E2F6 4 datasets
ChIP H1 ENCFF785DWK 327 bp overlap
ChIP K-562 ENCSR000EWJ.E2F6.K-562 321 bp overlap
ChIP K-562 ENCSR000BLI.E2F6.K-562 94 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 325 bp overlap
EP300 1 dataset
ChIP osteoblast ENCSR000AUD.EP300.osteoblast 338 bp overlap
ERG 1 dataset
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 449 bp overlap
ETV1 1 dataset
Motif DE_48h DE_48h-ETV1_MA0761.3 9 bp overlap
EZH2 30 datasets
ChIP A-673 ENCSR179SAO.EZH2.A-673 567 bp overlap
ChIP A673 ENCFF790MVL 637 bp overlap
ChIP A673 ENCFF955JRZ 637 bp overlap
ChIP A673 ENCFF955JRZ 588 bp overlap
ChIP GM23338 ENCFF613YON 206 bp overlap
ChIP GM23338 ENCFF613YON 385 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 108 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 512 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 495 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 333 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 315 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 402 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 805 bp overlap
ChIP hESC GSE113817.EZH2.hESC 288 bp overlap
ChIP hESC GSE113817.EZH2.hESC 115 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 242 bp overlap
ChIP hepatocyte ENCFF552DZB 801 bp overlap
ChIP hepatocyte ENCFF552DZB 645 bp overlap
ChIP hepatocyte ENCFF552DZB 444 bp overlap
ChIP hepatocyte ENCSR384LYW.EZH2.hepatocyte 474 bp overlap
ChIP keratinocyte ENCFF070STK 611 bp overlap
ChIP keratinocyte ENCFF070STK 611 bp overlap
ChIP keratinocyte ENCSR000ARK.EZH2.keratinocyte 472 bp overlap
ChIP myotube ENCFF857GWB 471 bp overlap
ChIP neural progenitor cell ENCFF018MKA 212 bp overlap
ChIP neural progenitor cell ENCFF018MKA 625 bp overlap
ChIP neural progenitor cell ENCFF472NFV 897 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 977 bp overlap
ChIP prostate-cancer_HA GSE107780.EZH2.prostate-cancer_HA 269 bp overlap
ChIP prostate-cancer_plko GSE107780.EZH2.prostate-cancer_plko 394 bp overlap
FOXO1 1 dataset
ChIP CD34 GSE80773.FOXO1.CD34 254 bp overlap
FOXP1 1 dataset
ChIP LNCaP GSE62492.FOXP1.LNCaP 106 bp overlap
HEXIM1 1 dataset
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 254 bp overlap
HNRNPK 6 datasets
ChIP Hep-G2 ENCSR519QAA.HNRNPK.Hep-G2 239 bp overlap
ChIP Hep-G2 GSE120104.HNRNPK.Hep-G2 239 bp overlap
ChIP HepG2 ENCFF493GNS 140 bp overlap
ChIP HepG2 ENCFF826MXP 299 bp overlap
ChIP K-562 ENCSR014RCS.HNRNPK.K-562 167 bp overlap
ChIP K-562 GSE120104.HNRNPK.K-562 167 bp overlap
IKZF1 1 dataset
Motif DE_48h DE_48h-IKZF1_MA1508.2 8 bp overlap
JARID2 2 datasets
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 476 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 478 bp overlap
KDM4A 7 datasets
ChIP H1 ENCFF078LED 580 bp overlap
ChIP H1 ENCFF078LED 701 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 434 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 381 bp overlap
ChIP hiPSC_IA12 GSE106870.KDM4A.hiPSC_IA12 243 bp overlap
ChIP hiPSC_IIA11 GSE106870.KDM4A.hiPSC_IIA11 334 bp overlap
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 187 bp overlap
KLF1 1 dataset
ChIP erythroid_R3R4 GSE43625.KLF1.erythroid_R3R4 65 bp overlap
KLF4 1 dataset
Motif DE_60h DE_60h-KLF4_MA0039.5 8 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 510 bp overlap
MAX 1 dataset
ChIP H1 ENCFF914VQY 270 bp overlap
MYB 2 datasets
ChIP DU528 GSE94000.MYB.DU528 594 bp overlap
ChIP PF-382 GSE94000.MYB.PF-382 313 bp overlap
NFYA 1 dataset
Motif DE_48h DE_48h-NFYA_MA0060.4 8 bp overlap
NFYC 1 dataset
Motif DE_48h DE_48h-NFYC_MA1644.2 7 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 337 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 712 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 974 bp overlap
PCGF2 1 dataset
ChIP NT2-D1 GSE101538.PCGF2.NT2-D1 156 bp overlap
POU5F1 4 datasets
ChIP BG03 GSE21614.POU5F1.BG03 169 bp overlap
ChIP BG03 GSE21614.POU5F1.BG03 212 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 168 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 500 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 1024 bp overlap
RAD21 10 datasets
ChIP H1 ENCFF698EWO 68 bp overlap
ChIP H1 ENCFF967OJF 245 bp overlap
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 115 bp overlap
ChIP K-562 ENCSR000BKV.RAD21.K-562 97 bp overlap
ChIP WA09 GSE105028.RAD21.WA09 171 bp overlap
ChIP hiPSC_CVI GSE106870.RAD21.hiPSC_CVI 150 bp overlap
ChIP hiPSC_IB12 GSE106870.RAD21.hiPSC_IB12 173 bp overlap
ChIP hiPSC_IIIB12 GSE106870.RAD21.hiPSC_IIIB12 238 bp overlap
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 220 bp overlap
ChIP hiPSC_parental-line GSE106870.RAD21.hiPSC_parental-line 204 bp overlap
RARA 1 dataset
Motif DE_48h DE_48h-RARA_MA0730.1 17 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 229 bp overlap
RELA 2 datasets
ChIP HDF_DMSO GSE77225.RELA.HDF_DMSO 165 bp overlap
ChIP HDF_NUTLIN GSE77225.RELA.HDF_NUTLIN 181 bp overlap
REST 2 datasets
ChIP K562 ENCFF688UKW 411 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 129 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 602 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 580 bp overlap
RUNX1 3 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 212 bp overlap
ChIP AML_age-50-70 GSE111821.RUNX1.AML_age-50-70 291 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 212 bp overlap
RUVBL2 1 dataset
ChIP U2OS GSE130602.RUVBL2.U2OS 497 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 383 bp overlap
Rarb 1 dataset
Motif DE_48h DE_48h-Rarb_MA0858.1 17 bp overlap
SMAD1 1 dataset
ChIP BG03 GSE36578.SMAD1.BG03 96 bp overlap
SMAD3 1 dataset
ChIP BG03 GSE36578.SMAD3.BG03 103 bp overlap
SMARCA4 1 dataset
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 210 bp overlap
SMARCC1 1 dataset
ChIP SCCOHT-1 GSE117734.SMARCC1.SCCOHT-1 251 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 228 bp overlap
SPI1 1 dataset
ChIP ME-1 GSE46044.SPI1.ME-1 247 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 541 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 560 bp overlap
STAG1 1 dataset
ChIP erythroid GSE67783.STAG1.erythroid 257 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 496 bp overlap
SUZ12 9 datasets
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 247 bp overlap
ChIP CRL-7250_shSS18 GSE108025.SUZ12.CRL-7250_shSS18 376 bp overlap
ChIP H1 ENCFF881NFR 917 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 235 bp overlap
ChIP NT2-D1 GSE101538.SUZ12.NT2-D1 257 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 199 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 713 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 444 bp overlap
ChIP hiPSC_WT GSE124903.SUZ12.hiPSC_WT 161 bp overlap
TAF15 2 datasets
ChIP Hep-G2 ENCSR825MZS.TAF15.Hep-G2 236 bp overlap
ChIP Hep-G2 GSE120104.TAF15.Hep-G2 236 bp overlap
TCF3 2 datasets
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 322 bp overlap
ChIP RCH-ACV GSE85988.TCF3.RCH-ACV 289 bp overlap
THAP1 1 dataset
Motif DE_48h DE_48h-THAP1_MA0597.3 8 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 148 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 288 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 239 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 153 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 597 bp overlap
YY1 1 dataset
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 97 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 68 bp overlap
ZNF175 1 dataset
Motif DE_48h DE_48h-ZNF175_MA2332.1 9 bp overlap
ZNF417 1 dataset
Motif DE_48h DE_48h-ZNF417_MA1727.2 7 bp overlap