chr15 : 69,885,224 – 69,886,009
785 bp 104 TFs 1 linked gene
This 785 bp open chromatin element is linked to TLE3 and is bound by 104 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TLE3 212.2 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:69,880,224 – 69,891,009
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
104 transcription factors
Source
Cell type
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 603 bp overlap
Alx1 1 dataset
Motif DE_48h DE_48h-Alx1_MA0854.2 8 bp overlap
Alx4 1 dataset
Motif DE_48h DE_48h-Alx4_MA0853.2 12 bp overlap
Arx 1 dataset
Motif DE_48h DE_48h-Arx_MA0874.2 10 bp overlap
BARX1 1 dataset
Motif DE_48h DE_48h-BARX1_MA0875.2 6 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 353 bp overlap
BRD4 10 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 204 bp overlap
ChIP SW480 GSE110473.BRD4.SW480 233 bp overlap
ChIP SW480_16h_TNF-a GSE110473.BRD4.SW480_16h_TNF-a 238 bp overlap
ChIP cortical-interneuron GSE117508.BRD4.cortical-interneuron 291 bp overlap
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 295 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 401 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 517 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 609 bp overlap
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 223 bp overlap
ChIP retina_AB1-FW23 GSE86981.BRD4.retina_AB1-FW23 271 bp overlap
BSX 1 dataset
Motif DE_48h DE_48h-BSX_MA0876.2 6 bp overlap
CBFA2T2 1 dataset
ChIP NCCIT GSE71675.CBFA2T2.NCCIT 89 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 478 bp overlap
CTCF 2 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 324 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 243 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF274GAT 212 bp overlap
DLX1 1 dataset
Motif DE_48h DE_48h-DLX1_MA0879.3 6 bp overlap
DLX6 1 dataset
Motif DE_48h DE_48h-DLX6_MA0882.2 6 bp overlap
DPF2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 207 bp overlap
Dlx3 1 dataset
Motif DE_48h DE_48h-Dlx3_MA0880.2 6 bp overlap
Dlx4 1 dataset
Motif DE_48h DE_48h-Dlx4_MA0881.2 6 bp overlap
EGR2 1 dataset
ChIP HEK293 ENCFF336LFH 318 bp overlap
EOMES 2 datasets
ChIP hESC GSE26097.EOMES.hESC 283 bp overlap
ChIP hESC GSE26097.EOMES.hESC 310 bp overlap
EP300 2 datasets
ChIP neural ENCSR843ZUP.EP300.neural 542 bp overlap
ChIP neural cell ENCFF442QNK 517 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D49 GSE139377.ERG.aortic-endothelial-cell_D49 291 bp overlap
ESR1 2 datasets
ChIP MCF-7 GSE148277.ESR1.MCF-7 233 bp overlap
ChIP MCF-7 GSE76893.ESR1.MCF-7 184 bp overlap
ESRRA 3 datasets
ChIP MCF-7 ENCSR954WVZ.ESRRA.MCF-7 359 bp overlap
ChIP SK-BR-3_EGF GSE81651.ESRRA.SK-BR-3_EGF 314 bp overlap
ChIP SK-BR-3_HRG GSE81651.ESRRA.SK-BR-3_HRG 379 bp overlap
ESRRG 1 dataset
ChIP cardiomyocyte GSE113760.ESRRG.cardiomyocyte 405 bp overlap
EZH2 2 datasets
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 288 bp overlap
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 402 bp overlap
FOS 1 dataset
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 356 bp overlap
FOSL2 2 datasets
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 179 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 370 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 571 bp overlap
ChIP DE DE-GATA4-2 785 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 623 bp overlap
ChIP DE DE-GATA6-2 785 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 785 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 785 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 785 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 776 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 785 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 785 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 744 bp overlap
GBX2 1 dataset
Motif DE_48h DE_48h-GBX2_MA0890.2 6 bp overlap
HAND2 1 dataset
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 243 bp overlap
HESX1 1 dataset
Motif DE_48h DE_48h-HESX1_MA0894.2 6 bp overlap
HOXA7 1 dataset
Motif DE_48h DE_48h-HOXA7_MA1498.3 6 bp overlap
HOXA9 1 dataset
ChIP HEK293-FT GSE62586.HOXA9.HEK293-FT 179 bp overlap
Hmx1 1 dataset
Motif DE_48h DE_48h-Hmx1_MA0896.2 9 bp overlap
Hmx2 1 dataset
Motif DE_48h DE_48h-Hmx2_MA0897.2 15 bp overlap
Hmx3 1 dataset
Motif DE_48h DE_48h-Hmx3_MA0898.2 9 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 246 bp overlap
JARID2 1 dataset
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 293 bp overlap
JUN 8 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 785 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 612 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 785 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 785 bp overlap
ChIP DE_D2 S54-DE-d2-JUN-exp2 669 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 248 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 785 bp overlap
ChIP Karpas-299 GSE151413.JUN.Karpas-299 650 bp overlap
KLF14 1 dataset
Motif DE_48h DE_48h-KLF14_MA0740.2 9 bp overlap
KLF15 1 dataset
Motif DE_48h DE_48h-KLF15_MA1513.2 8 bp overlap
KLF4 2 datasets
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 507 bp overlap
ChIP HAP1 GSE130417.KLF4.HAP1 351 bp overlap
KLF5 1 dataset
Motif DE_48h DE_48h-KLF5_MA0599.1 10 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 436 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 282 bp overlap
LBX2 1 dataset
Motif DE_48h DE_48h-LBX2_MA0699.2 6 bp overlap
LHX2 1 dataset
Motif DE_48h DE_48h-LHX2_MA0700.3 6 bp overlap
MAZ 1 dataset
Motif DE_48h DE_48h-MAZ_MA1522.2 8 bp overlap
MED1 3 datasets
ChIP HCT-116_shLuc_thaps GSE121798.MED1.HCT-116_shLuc_thaps 95 bp overlap
ChIP HCT-116_thaps GSE121798.MED1.HCT-116_thaps 184 bp overlap
ChIP MCF-7_SHRARS_E2 GSE60270.MED1.MCF-7_SHRARS_E2 135 bp overlap
MGA::EVX1 1 dataset
Motif DE_48h DE_48h-MGAEVX1_MA1960.2 11 bp overlap
MSX1 1 dataset
Motif DE_48h DE_48h-MSX1_MA0666.3 6 bp overlap
MSX2 1 dataset
Motif DE_48h DE_48h-MSX2_MA0708.3 6 bp overlap
MYC 2 datasets
ChIP P493-6_scramble-shRNA GSE101853.MYC.P493-6_scramble-shRNA 174 bp overlap
ChIP P493-6_scramble-shRNA GSE101853.MYC.P493-6_scramble-shRNA 174 bp overlap
Msx3 1 dataset
Motif DE_48h DE_48h-Msx3_MA0709.2 6 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 474 bp overlap
Nobox 1 dataset
Motif DE_48h DE_48h-Nobox_MA0125.2 6 bp overlap
OLIG2 2 datasets
ChIP brain-prefrontal-cortex_2016018 GSE129039.OLIG2.brain-prefrontal-cortex_2016018 296 bp overlap
ChIP brain-prefrontal-cortex_2017011 GSE129039.OLIG2.brain-prefrontal-cortex_2017011 295 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 168 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 397 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 167 bp overlap
PATZ1 1 dataset
Motif DE_48h DE_48h-PATZ1_MA1961.2 11 bp overlap
PHIP 1 dataset
ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 367 bp overlap
POLR2A 1 dataset
ChIP neural cell ENCFF604SPB 192 bp overlap
POU2F2 1 dataset
ChIP HNPC_UNDIF GSE74814.POU2F2.HNPC_UNDIF 134 bp overlap
POU3F1 1 dataset
ChIP SKM-1_D2 GSE93706.POU3F1.SKM-1_D2 332 bp overlap
POU3F2 2 datasets
ChIP hiPSC GSE149017.POU3F2.hiPSC 178 bp overlap
ChIP hiPSC_SGC0946 GSE149017.POU3F2.hiPSC_SGC0946 285 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 257 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 639 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 563 bp overlap
ChIP hiPSC GSE149017.POU5F1.hiPSC 171 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 742 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCFF283AJL 150 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 247 bp overlap
PROX1 1 dataset
ChIP SW480 GSE60390.PROX1.SW480 85 bp overlap
RAD21 7 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 477 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 438 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 653 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 365 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 538 bp overlap
ChIP neural cell ENCFF564MOT 505 bp overlap
ChIP neural cell ENCFF564MOT 368 bp overlap
RAX 1 dataset
Motif DE_48h DE_48h-RAX_MA0718.2 6 bp overlap
RELA 31 datasets
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 209 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 286 bp overlap
ChIP HUVEC-C_TNF GSE53998.RELA.HUVEC-C_TNF 278 bp overlap
ChIP HUVEC-C_TNF_JQ1 GSE53998.RELA.HUVEC-C_TNF_JQ1 246 bp overlap
ChIP HeLa-B2_P65KD_TA_TNFA GSE24518.RELA.HeLa-B2_P65KD_TA_TNFA 100 bp overlap
ChIP aortic-endothelial-cell_IL1B_D11 GSE139377.RELA.aortic-endothelial-cell_IL1B_D11 294 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 478 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 359 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 300 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 286 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 390 bp overlap
ChIP aortic-endothelial-cell_IL1B_D22 GSE139377.RELA.aortic-endothelial-cell_IL1B_D22 289 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 356 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 349 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 235 bp overlap
ChIP aortic-endothelial-cell_IL1B_D28 GSE139377.RELA.aortic-endothelial-cell_IL1B_D28 244 bp overlap
ChIP aortic-endothelial-cell_IL1B_D3 GSE139377.RELA.aortic-endothelial-cell_IL1B_D3 287 bp overlap
ChIP aortic-endothelial-cell_IL1B_D31 GSE139377.RELA.aortic-endothelial-cell_IL1B_D31 297 bp overlap
ChIP aortic-endothelial-cell_IL1B_D33 GSE139377.RELA.aortic-endothelial-cell_IL1B_D33 207 bp overlap
ChIP aortic-endothelial-cell_IL1B_D38 GSE139377.RELA.aortic-endothelial-cell_IL1B_D38 334 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 389 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 433 bp overlap
ChIP aortic-endothelial-cell_IL1B_D40 GSE139377.RELA.aortic-endothelial-cell_IL1B_D40 400 bp overlap
ChIP aortic-endothelial-cell_IL1B_D41 GSE139377.RELA.aortic-endothelial-cell_IL1B_D41 229 bp overlap
ChIP aortic-endothelial-cell_IL1B_D45 GSE139377.RELA.aortic-endothelial-cell_IL1B_D45 229 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 226 bp overlap
ChIP aortic-endothelial-cell_IL1B_D49 GSE139377.RELA.aortic-endothelial-cell_IL1B_D49 363 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 223 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 362 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 343 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 235 bp overlap
REST 3 datasets
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 136 bp overlap
ChIP neural ENCSR000BTV.REST.neural 505 bp overlap
ChIP neural cell ENCFF882LXX 504 bp overlap
Runx1 1 dataset
Motif DE_48h DE_48h-Runx1_MA0002.3 9 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 777 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 785 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 785 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 785 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 785 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 785 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 785 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 785 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 176 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 167 bp overlap
SMARCA4 4 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 209 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 224 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 785 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 535 bp overlap
SMARCB1 1 dataset
ChIP hiPSC GSE124903.SMARCB1.hiPSC 395 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S10-DE-d1-BAF155-exp1 577 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 785 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 356 bp overlap
SMC3 2 datasets
ChIP neural ENCSR404BPV.SMC3.neural 536 bp overlap
ChIP neural cell ENCFF795YGY 531 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 277 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 785 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 540 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 181 bp overlap
SP4 1 dataset
Motif DE_48h DE_48h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif DE_48h DE_48h-SP5_MA1965.2 6 bp overlap
SS18 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 347 bp overlap
TP53 1 dataset
ChIP SW480_0h_TNFa GSE102796.TP53.SW480_0h_TNFa 230 bp overlap
TP63 1 dataset
Motif DE_48h DE_48h-TP63_MA0525.2 18 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 195 bp overlap
Wt1 1 dataset
Motif DE_48h DE_48h-Wt1_MA1627.2 10 bp overlap
ZBTB7A 1 dataset
ChIP VCaP_FBS GSE123089.ZBTB7A.VCaP_FBS 231 bp overlap
ZFHX2 1 dataset
ChIP HEK293 ENCFF167TUA 368 bp overlap
ZNF148 1 dataset
Motif DE_48h DE_48h-ZNF148_MA1653.2 10 bp overlap
ZNF184 1 dataset
ChIP HEK293 ENCSR020UPN.ZNF184.HEK293 195 bp overlap
ZNF19 1 dataset
ChIP HEK293T GSE78099.ZNF19.HEK293T 191 bp overlap
ZNF398 2 datasets
ChIP HEK293 ENCFF184XEW 440 bp overlap
ChIP HEK293 ENCSR676ZEF.ZNF398.HEK293 263 bp overlap
ZNF460 1 dataset
Motif DE_48h DE_48h-ZNF460_MA1596.1 16 bp overlap
ZNF582 1 dataset
Motif DE_48h DE_48h-ZNF582_MA1983.2 19 bp overlap
ZNF708 1 dataset
Motif DE_48h DE_48h-ZNF708_MA1730.2 9 bp overlap
ZNF75A 1 dataset
Motif DE_48h DE_48h-ZNF75A_MA2097.1 12 bp overlap
ZSCAN16 1 dataset
Motif DE_48h DE_48h-ZSCAN16_MA2100.1 18 bp overlap
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