chr15 : 62,209,095 62,210,128
1,033 bp 86 TFs 2 linked genes
This 1.0 kb open chromatin element is linked to VPS13C and TLN2 and is bound by 86 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
VPS13C 149.1 kb Distal Multiome
TLN2 181.0 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr15:62,204,095 – 62,215,128
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
86 transcription factors
Source
Cell type
AR 34 datasets
ChIP DUCAP_ANDROGEN GSE70679.AR.DUCAP_ANDROGEN 111 bp overlap
ChIP LNCaP ERP003503.AR.LNCaP 132 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 176 bp overlap
ChIP LNCaP_SHCTR_DHT GSE62492.AR.LNCaP_SHCTR_DHT 132 bp overlap
ChIP LNCaP_SHFOXP1_DHT GSE62492.AR.LNCaP_SHFOXP1_DHT 116 bp overlap
ChIP LTAD_siControl GSE94577.AR.LTAD_siControl 160 bp overlap
ChIP VCaP GSE148358.AR.VCaP 137 bp overlap
ChIP VCaP_DHAT_18H GSE28950.AR.VCaP_DHAT_18H 154 bp overlap
ChIP VCaP_DHAT_2H GSE28950.AR.VCaP_DHAT_2H 202 bp overlap
ChIP VCaP_DHT24H GSE58428.AR.VCaP_DHT24H 199 bp overlap
ChIP VCaP_DHT24H_SHFOXA1 GSE58428.AR.VCaP_DHT24H_SHFOXA1 277 bp overlap
ChIP VCaP_DHT24H_SHFOXP1 GSE58428.AR.VCaP_DHT24H_SHFOXP1 915 bp overlap
ChIP VCaP_DHT24H_SHRUNX1 GSE58428.AR.VCaP_DHT24H_SHRUNX1 381 bp overlap
ChIP VCaP_Darolutamide GSE148358.AR.VCaP_Darolutamide 183 bp overlap
ChIP VCaP_R1881 GSE32892.AR.VCaP_R1881 208 bp overlap
ChIP VCaP_R1881_10C26 GSE32892.AR.VCaP_R1881_10C26 150 bp overlap
ChIP VCaP_R1881_4H GSE84432.AR.VCaP_R1881_4H 147 bp overlap
ChIP VCaP_shERG GSE110655.AR.VCaP_shERG 191 bp overlap
ChIP prostate GSE56288.AR.prostate 164 bp overlap
ChIP prostate-cancer_PDX_167 GSE130408.AR.prostate-cancer_PDX_167 119 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.AR.prostate-cancer_PDX_189-4 104 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 209 bp overlap
ChIP prostate-cancer_PDX_35 GSE130408.AR.prostate-cancer_PDX_35 197 bp overlap
ChIP prostate-cancer_PDX_92 GSE130408.AR.prostate-cancer_PDX_92 124 bp overlap
ChIP prostate_1239_T GSE130408.AR.prostate_1239_T 109 bp overlap
ChIP prostate_1636_T GSE130408.AR.prostate_1636_T 254 bp overlap
ChIP prostate_1730_T GSE130408.AR.prostate_1730_T 332 bp overlap
ChIP prostate_1798_T GSE130408.AR.prostate_1798_T 566 bp overlap
ChIP prostate_1798_T GSE130408.AR.prostate_1798_T 130 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 336 bp overlap
ChIP prostate_1816_T GSE130408.AR.prostate_1816_T 160 bp overlap
ChIP prostate_2752_T GSE130408.AR.prostate_2752_T 346 bp overlap
ChIP prostate_2752_T GSE130408.AR.prostate_2752_T 153 bp overlap
ChIP prostate_4024_T GSE130408.AR.prostate_4024_T 238 bp overlap
ARID1A 3 datasets
ChIP RMG-I GSE120058.ARID1A.RMG-I 77 bp overlap
ChIP RMG-I GSE120058.ARID1A.RMG-I 880 bp overlap
ChIP RMG-I GSE104545.ARID1A.RMG-I 528 bp overlap
ARNTL 1 dataset
ChIP U2OS_trough_DMOG GSE85096.ARNTL.U2OS_trough_DMOG 229 bp overlap
ASH2L 2 datasets
ChIP VCaP GSE60841.ASH2L.VCaP 458 bp overlap
ChIP VCaP_R1881 GSE60841.ASH2L.VCaP_R1881 263 bp overlap
Atoh1 1 dataset
Motif DE_60h DE_60h-Atoh1_MA1467.3 7 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 213 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 145 bp overlap
BRD2 1 dataset
ChIP HCC1806_NTsiRNA GSE116879.BRD2.HCC1806_NTsiRNA 294 bp overlap
CDX2 3 datasets
ChIP LS180 GSE31939.CDX2.LS180 405 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 291 bp overlap
ChIP LS180_125 GSE31939.CDX2.LS180_125 159 bp overlap
CEBPA 1 dataset
Motif DE_60h DE_60h-CEBPA_MA0102.5 10 bp overlap
CEBPG 1 dataset
Motif DE_60h DE_60h-CEBPG_MA1636.2 10 bp overlap
CREBBP 2 datasets
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 773 bp overlap
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 582 bp overlap
CTCF 2 datasets
ChIP esophagus_squamous-epithelium ENCSR450FRI.CTCF.esophagus_squamous-epithelium 208 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d6 211 bp overlap
CTNNB1 1 dataset
ChIP LS180 GSE31939.CTNNB1.LS180 332 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF274GAT 251 bp overlap
ChIP BLaER1 ENCFF274GAT 180 bp overlap
E2F6 1 dataset
ChIP WA01 ENCSR000BSI.E2F6.WA01 156 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 220 bp overlap
ERG 1 dataset
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 156 bp overlap
ESR1 5 datasets
ChIP Ishikawa_ETV4-KO2_Mili GSE129803.ESR1.Ishikawa_ETV4-KO2_Mili 172 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_2 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_2 565 bp overlap
ChIP endometrioid-adenocarcinoma_tumor_3 GSE94031.ESR1.endometrioid-adenocarcinoma_tumor_3 399 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 495 bp overlap
ChIP primary-endometrium-cancer_E1_DSG GSE114737.ESR1.primary-endometrium-cancer_E1_DSG 208 bp overlap
FERD3L 1 dataset
Motif DE_60h DE_60h-FERD3L_MA1485.1 14 bp overlap
FIGLA 2 datasets
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
Motif DE_72h DE_72h-FIGLA_MA0820.2 6 bp overlap
FOXA1 9 datasets
ChIP LNCaP GSE56288.FOXA1.LNCaP 233 bp overlap
ChIP LNCaP_R1881 GSE69043.FOXA1.LNCaP_R1881 178 bp overlap
ChIP LS180 GSE140533.FOXA1.LS180 97 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 468 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 282 bp overlap
ChIP prostate_2030 GSE130408.FOXA1.prostate_2030 221 bp overlap
ChIP prostate_2030_T GSE130408.FOXA1.prostate_2030_T 133 bp overlap
ChIP prostate_2480 GSE130408.FOXA1.prostate_2480 226 bp overlap
ChIP prostate_P19_T GSE130408.FOXA1.prostate_P19_T 197 bp overlap
FOXA2 5 datasets
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 280 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 178 bp overlap
ChIP DE DE-FOXA2-1 885 bp overlap
ChIP DE DE-FOXA2-2 396 bp overlap
ChIP DE DE-FOXA2-2 411 bp overlap
GATA4 5 datasets
ChIP DE DE-GATA4-1 755 bp overlap
ChIP DE DE-GATA4-2 821 bp overlap
ChIP foregut GSE117136.GATA4.foregut 375 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 493 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 253 bp overlap
GATA6 10 datasets
ChIP AGS GSE51705.GATA6.AGS 267 bp overlap
ChIP DE DE-GATA6-1 409 bp overlap
ChIP DE DE-GATA6-2 878 bp overlap
ChIP ESO-26 GSE132680.GATA6.ESO-26 716 bp overlap
ChIP YCC-3 GSE51705.GATA6.YCC-3 335 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 625 bp overlap
ChIP foregut GSE117136.GATA6.foregut 491 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 308 bp overlap
ChIP pancreatic-progenitor_KO GSE117136.GATA6.pancreatic-progenitor_KO 336 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 336 bp overlap
GRHL2 2 datasets
ChIP HBE GSE46194.GRHL2.HBE 271 bp overlap
ChIP HBE GSE46194.GRHL2.HBE 194 bp overlap
GTF2B 1 dataset
ChIP IMR-90_TERT GSE38303.GTF2B.IMR-90_TERT 140 bp overlap
HAND2 1 dataset
Motif DE_60h DE_60h-HAND2_MA1638.2 6 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 287 bp overlap
HNF1B 2 datasets
ChIP PDAC GSE64557.HNF1B.PDAC 626 bp overlap
ChIP foregut GSE117136.HNF1B.foregut 296 bp overlap
HNF4A 1 dataset
ChIP IM95 GSE114018.HNF4A.IM95 248 bp overlap
HOXB13 21 datasets
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 268 bp overlap
ChIP prostate-cancer_PDX_189-4 GSE130408.HOXB13.prostate-cancer_PDX_189-4 65 bp overlap
ChIP prostate_2078 GSE130408.HOXB13.prostate_2078 177 bp overlap
ChIP prostate_2078_T GSE130408.HOXB13.prostate_2078_T 221 bp overlap
ChIP prostate_2483 GSE130408.HOXB13.prostate_2483 176 bp overlap
ChIP prostate_2483 GSE130408.HOXB13.prostate_2483 172 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 203 bp overlap
ChIP prostate_2483_T GSE130408.HOXB13.prostate_2483_T 156 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 312 bp overlap
ChIP prostate_2484 GSE130408.HOXB13.prostate_2484 198 bp overlap
ChIP prostate_P1 GSE130408.HOXB13.prostate_P1 138 bp overlap
ChIP prostate_P13 GSE130408.HOXB13.prostate_P13 263 bp overlap
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 550 bp overlap
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 191 bp overlap
ChIP prostate_P19_T GSE130408.HOXB13.prostate_P19_T 164 bp overlap
ChIP prostate_P1_T GSE130408.HOXB13.prostate_P1_T 295 bp overlap
ChIP prostate_P25 GSE130408.HOXB13.prostate_P25 201 bp overlap
ChIP prostate_P27_T GSE130408.HOXB13.prostate_P27_T 186 bp overlap
ChIP prostate_P29 GSE130408.HOXB13.prostate_P29 209 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 231 bp overlap
ChIP prostate_P5_T GSE130408.HOXB13.prostate_P5_T 146 bp overlap
IRF2 1 dataset
ChIP keratinocyte_DOX GSE135677.IRF2.keratinocyte_DOX 210 bp overlap
KDM1A 1 dataset
ChIP keratinocyte_diff GSE57702.KDM1A.keratinocyte_diff 209 bp overlap
KDM4A 3 datasets
ChIP H1 ENCFF078LED 513 bp overlap
ChIP H1 ENCFF078LED 701 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 229 bp overlap
KLF16 2 datasets
Motif DE_60h DE_60h-KLF16_MA0741.1 11 bp overlap
Motif DE_72h DE_72h-KLF16_MA0741.1 11 bp overlap
KLF3 1 dataset
ChIP keratinocyte GSE140991.KLF3.keratinocyte 525 bp overlap
KLF4 1 dataset
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 227 bp overlap
KLF5 3 datasets
Motif DE_60h DE_60h-KLF5_MA0599.1 10 bp overlap
Motif DE_72h DE_72h-KLF5_MA0599.1 10 bp overlap
ChIP ESO-26 GSE132680.KLF5.ESO-26 729 bp overlap
KLF9 2 datasets
Motif DE_60h DE_60h-KLF9_MA1107.3 11 bp overlap
Motif DE_72h DE_72h-KLF9_MA1107.3 11 bp overlap
MAML1 2 datasets
ChIP SCC_4h GSE156486.MAML1.SCC_4h 178 bp overlap
ChIP SCC_4h GSE156486.MAML1.SCC_4h 233 bp overlap
MED1 2 datasets
ChIP MM1-S_JQ1_5000NM GSE49224.MED1.MM1-S_JQ1_5000NM 222 bp overlap
ChIP VCaP_R1881 GSE148358.MED1.VCaP_R1881 257 bp overlap
MED26 1 dataset
ChIP U2OS_SHCTR GSE73742.MED26.U2OS_SHCTR 262 bp overlap
MEIS1 2 datasets
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
Motif DE_72h DE_72h-MEIS1_MA0498.3 5 bp overlap
MSC 2 datasets
Motif DE_60h DE_60h-MSC_MA0665.1 10 bp overlap
Motif DE_72h DE_72h-MSC_MA0665.1 10 bp overlap
NCOA1 1 dataset
ChIP LS180 GSE39277.NCOA1.LS180 109 bp overlap
NCOR1 1 dataset
ChIP LS180_125 GSE39277.NCOR1.LS180_125 101 bp overlap
NCOR2 2 datasets
ChIP LS180 GSE39277.NCOR2.LS180 185 bp overlap
ChIP LS180_125 GSE39277.NCOR2.LS180_125 101 bp overlap
NIPBL 1 dataset
ChIP GP5D GSE51234.NIPBL.GP5D 287 bp overlap
POLR2A 5 datasets
ChIP prostate gland ENCFF881OMH 273 bp overlap
ChIP stomach ENCFF607ZPU 176 bp overlap
ChIP stomach ENCFF820WZN 264 bp overlap
ChIP vagina ENCFF305NWS 344 bp overlap
ChIP vagina ENCFF305NWS 137 bp overlap
POU5F1 1 dataset
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 116 bp overlap
Ptf1A 3 datasets
Motif DE_60h DE_60h-Ptf1A_MA1618.2 9 bp overlap
Motif DE_60h DE_60h-Ptf1A_MA1620.2 8 bp overlap
Motif DE_72h DE_72h-Ptf1A_MA1620.2 8 bp overlap
RBPJ 1 dataset
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 149 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 351 bp overlap
RELA 1 dataset
ChIP KB_IL GSE52469.RELA.KB_IL 59 bp overlap
RXR 1 dataset
ChIP LS180 GSE31939.RXR.LS180 156 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 380 bp overlap
SMC1A 2 datasets
ChIP primary-epidermal-keratinocyte_diff_d3 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d3 272 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 249 bp overlap
SMC3 1 dataset
ChIP GP5D GSE51234.SMC3.GP5D 470 bp overlap
SOX13 1 dataset
ChIP HepG2 ENCFF062VSQ 357 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 833 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 962 bp overlap
SOX2 1 dataset
ChIP TT GSE46837.SOX2.TT 179 bp overlap
SP3 2 datasets
Motif DE_60h DE_60h-SP3_MA0746.3 11 bp overlap
Motif DE_72h DE_72h-SP3_MA0746.3 11 bp overlap
STAT3 2 datasets
ChIP FaDu_DMSO GSE78212.STAT3.FaDu_DMSO 290 bp overlap
ChIP T-47D_JC4757 GSE126004.STAT3.T-47D_JC4757 203 bp overlap
TBX5 2 datasets
Motif DE_60h DE_60h-TBX5_MA0807.1 8 bp overlap
Motif DE_72h DE_72h-TBX5_MA0807.1 8 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 360 bp overlap
TEAD1 1 dataset
ChIP keratinocyte GSE138727.TEAD1.keratinocyte 416 bp overlap
TFAP4 1 dataset
ChIP DLD-1 GSE46935.TFAP4.DLD-1 320 bp overlap
TP53 1 dataset
ChIP keratinocyte_CISP GSE56674.TP53.keratinocyte_CISP 138 bp overlap
TP63 15 datasets
ChIP BxPC-3 GSE115461.TP63.BxPC-3 411 bp overlap
ChIP HaCaT_LacZ_TGFB GSE60814.TP63.HaCaT_LacZ_TGFB 251 bp overlap
ChIP HaCaT_caRAS_TGFB GSE60814.TP63.HaCaT_caRAS_TGFB 184 bp overlap
ChIP JHU-029 GSE88859.TP63.JHU-029 218 bp overlap
ChIP MCF-10A_DCIS GSE72009.TP63.MCF-10A_DCIS 181 bp overlap
ChIP SUIT-2 GSE115461.TP63.SUIT-2 315 bp overlap
ChIP keratinocyte GSE56674.TP63.keratinocyte 234 bp overlap
ChIP keratinocyte_CISP GSE56674.TP63.keratinocyte_CISP 255 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 359 bp overlap
ChIP keratinocyte_D0 GSE59824.TP63.keratinocyte_D0 313 bp overlap
ChIP keratinocyte_D2 GSE59824.TP63.keratinocyte_D2 333 bp overlap
ChIP keratinocyte_D4 GSE59824.TP63.keratinocyte_D4 293 bp overlap
ChIP keratinocyte_D7 GSE59824.TP63.keratinocyte_D7 324 bp overlap
ChIP keratinocyte_epidermal GSE67382.TP63.keratinocyte_epidermal 278 bp overlap
ChIP keratinocyte_epidermal_KDPAF GSE67382.TP63.keratinocyte_epidermal_KDPAF 209 bp overlap
TRIM28 1 dataset
ChIP WIBR3_NAIVE GSE84382.TRIM28.WIBR3_NAIVE 258 bp overlap
YY1 1 dataset
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 173 bp overlap
ZBTB18 2 datasets
Motif DE_60h DE_60h-ZBTB18_MA0698.2 11 bp overlap
Motif DE_72h DE_72h-ZBTB18_MA0698.2 11 bp overlap
ZEB1 2 datasets
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
Motif DE_72h DE_72h-ZEB1_MA0103.4 6 bp overlap
ZNF140 2 datasets
Motif DE_60h DE_60h-ZNF140_MA1589.2 19 bp overlap
Motif DE_72h DE_72h-ZNF140_MA1589.2 19 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF582 1 dataset
Motif DE_60h DE_60h-ZNF582_MA1983.2 19 bp overlap
ZNF680 3 datasets
ChIP HEK293 ENCFF418WHE 381 bp overlap
ChIP HEK293 ENCSR307CKC.ZNF680.HEK293 286 bp overlap
ChIP HEK293 GSE76494.ZNF680.HEK293 299 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 147 bp overlap
ZNF750 2 datasets
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 234 bp overlap
ChIP keratinocyte_diff GSE57702.ZNF750.keratinocyte_diff 326 bp overlap
Zfp961 1 dataset
Motif DE_60h DE_60h-Zfp961_MA2126.1 8 bp overlap