chr13 : 99,974,729 – 99,975,144
415 bp 81 TFs 3 linked genes
This 415 bp open chromatin element is linked to ZIC5, ENSG00000288060, and ZIC2 and is bound by 81 transcription factors.
Linked Genes
3 genes
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ZIC5 3.0 kb Proximal Proximity
ENSG00000288060 4.9 kb Proximal Proximity
ZIC2 6.6 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr13:99,969,729 – 99,980,144
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
81 transcription factors
Source
Cell type
AFF4 1 dataset
ChIP WTC11 ENCFF556XTF 335 bp overlap
AR 1 dataset
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 152 bp overlap
ASH2L 1 dataset
ChIP H1 ENCFF399KAM 297 bp overlap
BACH1 1 dataset
ChIP H1 ENCFF282VDB 321 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 223 bp overlap
ChIP WA01 GSE104690.BCOR.WA01 99 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 415 bp overlap
BRD4 2 datasets
ChIP retina_AB1-FW20 GSE86981.BRD4.retina_AB1-FW20 289 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 138 bp overlap
CHD1 2 datasets
ChIP H1 ENCFF998XEK 415 bp overlap
ChIP WA01 ENCSR000AQK.CHD1.WA01 415 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 173 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 259 bp overlap
CREB1 1 dataset
ChIP H1 ENCFF955PMP 321 bp overlap
CTBP2 1 dataset
ChIP H1 ENCFF329MAX 305 bp overlap
CTCF 1 dataset
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 226 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF346MCV 251 bp overlap
E2F6 2 datasets
ChIP WA01 ENCSR000BSI.E2F6.WA01 108 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 184 bp overlap
ERG 1 dataset
ChIP aortic-endothelial-cell_D1 GSE139377.ERG.aortic-endothelial-cell_D1 202 bp overlap
ESR1 1 dataset
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 123 bp overlap
ETS1 1 dataset
ChIP GM23338 ENCFF701IZH 105 bp overlap
EZH2 27 datasets
ChIP GM23338 ENCFF613YON 219 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 132 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 415 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 322 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 415 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 319 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 219 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 138 bp overlap
ChIP astrocyte ENCFF365JTP 415 bp overlap
ChIP astrocyte ENCSR000ARR.EZH2.astrocyte 415 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 311 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 255 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 415 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 413 bp overlap
ChIP fibroblast of lung ENCFF479BAW 415 bp overlap
ChIP hepatocyte ENCFF552DZB 167 bp overlap
ChIP keratinocyte ENCFF070STK 415 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 414 bp overlap
ChIP myotube ENCFF857GWB 388 bp overlap
ChIP myotube ENCFF857GWB 296 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 379 bp overlap
ChIP neural progenitor cell ENCFF018MKA 409 bp overlap
ChIP neural progenitor cell ENCFF472NFV 415 bp overlap
ChIP neural progenitor cell ENCFF472NFV 415 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 129 bp overlap
ChIP neural_progenitor ENCSR069DPL.EZH2.neural_progenitor 203 bp overlap
ChIP peripheral-blood-mononuclear-cell_B-cell GSE115772.EZH2.peripheral-blood-mononuclear-cell_B-cell 162 bp overlap
EZH2_phosphoT487 3 datasets
ChIP SK-N-SH ENCSR297MUV.EZH2_phosphoT487.SK-N-SH 212 bp overlap
ChIP SK-N-SH ENCSR297MUV.EZH2_phosphoT487.SK-N-SH 101 bp overlap
ChIP neural_progenitor ENCSR656MXA.EZH2_phosphoT487.neural_progenitor 149 bp overlap
FOXP1 2 datasets
ChIP WTC11 ENCFF338WGC 373 bp overlap
ChIP WTC11 ENCFF338WGC 305 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 200 bp overlap
GLIS3 1 dataset
ChIP H9_plus GSE109562.GLIS3.H9_plus 237 bp overlap
GTF3C2 1 dataset
ChIP H9 GSE94418.GTF3C2.H9 396 bp overlap
HDAC2 3 datasets
ChIP H1 ENCFF939VKA 237 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 404 bp overlap
ChIP WA01 ENCSR000BNR.HDAC2.WA01 199 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 297 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 307 bp overlap
ChIP UTEIPS6 GSE48516.JARID2.UTEIPS6 306 bp overlap
JUN 3 datasets
ChIP DE_D1 S40-DE-d1-JUN-exp2 182 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 141 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 122 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 415 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 415 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 338 bp overlap
MYBL2 1 dataset
ChIP WTC11 ENCFF166TKT 285 bp overlap
NANOG 2 datasets
ChIP WA09 GSE105028.NANOG.WA09 78 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 74 bp overlap
NCOA2 1 dataset
ChIP MCF-7_E2 ERP000901.NCOA2.MCF-7_E2 118 bp overlap
PCGF2 1 dataset
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 76 bp overlap
PHF8 1 dataset
ChIP H1 ENCFF427UFV 415 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 253 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 415 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 283 bp overlap
PRDM15 1 dataset
ChIP WTC11 ENCFF108TMF 283 bp overlap
PRDM9 1 dataset
Motif ES_0h ES_0h-PRDM9_MA1723.2 20 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 415 bp overlap
REST 1 dataset
ChIP CD4 GSE49570.REST.CD4 150 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 415 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 258 bp overlap
SFMBT1 1 dataset
ChIP HeLa GSE45441.SFMBT1.HeLa 174 bp overlap
SIN3A 4 datasets
ChIP H1 ENCFF042ZSL 379 bp overlap
ChIP H1 ENCFF896IJG 160 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 120 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 114 bp overlap
SMAD2 1 dataset
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 74 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 415 bp overlap
SMAD2_3 1 dataset
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 385 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_2H GSE36578.SMAD3.BG03_DIFF_2H 89 bp overlap
SMARCA4 4 datasets
ChIP Aska-SS GSE108025.SMARCA4.Aska-SS 345 bp overlap
ChIP Aska-SS_shSSX GSE108025.SMARCA4.Aska-SS_shSSX 223 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 330 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 415 bp overlap
SMARCB1 3 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 120 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 149 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 68 bp overlap
SMARCC1 4 datasets
ChIP ESC S25-ESC-d0-BAF155-exp1 170 bp overlap
ChIP SYO-1_shCt GSE139053.SMARCC1.SYO-1_shCt 415 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 111 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 415 bp overlap
SOX10 1 dataset
Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap
SOX4 1 dataset
Motif ES_0h ES_0h-SOX4_MA0867.3 8 bp overlap
SP1 4 datasets
Motif ES_0h ES_0h-SP1_MA0079.5 9 bp overlap
ChIP WA01 ENCSR000BIR.SP1.WA01 185 bp overlap
ChIP WTC11 ENCFF688PEU 339 bp overlap
ChIP WTC11 ENCFF688PEU 276 bp overlap
SP4 1 dataset
Motif ES_0h ES_0h-SP4_MA0685.2 9 bp overlap
SP5 1 dataset
Motif ES_0h ES_0h-SP5_MA1965.2 6 bp overlap
SRSF3 2 datasets
ChIP Hep-G2 GSE120104.SRSF3.Hep-G2 155 bp overlap
ChIP K-562 GSE120104.SRSF3.K-562 365 bp overlap
SS18 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 415 bp overlap
SUZ12 3 datasets
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 414 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 387 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 415 bp overlap
Sox6 1 dataset
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
TAF1 2 datasets
ChIP H1 ENCFF478SZO 319 bp overlap
ChIP WA01 ENCSR000BHO.TAF1.WA01 177 bp overlap
TAF7 1 dataset
ChIP H1 ENCFF061XZZ 319 bp overlap
TBX18 1 dataset
Motif ES_0h ES_0h-TBX18_MA1565.2 9 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 75 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 103 bp overlap
TGIF2 1 dataset
ChIP WTC11 ENCFF649SHI 177 bp overlap
TP53 1 dataset
ChIP Calu-1_MUT8-COMB GSE128673.TP53.Calu-1_MUT8-COMB 250 bp overlap
TP63 1 dataset
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 174 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 333 bp overlap
USF1 2 datasets
ChIP H1 ENCFF090WVU 161 bp overlap
ChIP WA01 ENCSR000BIU.USF1.WA01 144 bp overlap
Wt1 1 dataset
Motif ES_0h ES_0h-Wt1_MA1627.2 10 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 57 bp overlap
ZBTB33 1 dataset
ChIP K562 ENCFF427SDV 294 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 262 bp overlap
ZBTB6 3 datasets
ChIP HEK293 ENCFF881ECZ 89 bp overlap
ChIP HEK293 ENCSR619OUC.ZBTB6.HEK293 187 bp overlap
ChIP HEK293 GSE76494.ZBTB6.HEK293 163 bp overlap
ZKSCAN5 1 dataset
Motif ES_0h ES_0h-ZKSCAN5_MA1652.2 9 bp overlap
ZNF189 1 dataset
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 194 bp overlap
ZNF202 1 dataset
ChIP HEK293 ENCSR996FYT.ZNF202.HEK293 56 bp overlap
ZNF257 1 dataset
Motif ES_0h ES_0h-ZNF257_MA1710.2 10 bp overlap
ZNF28 1 dataset
ChIP HEK293T GSE78099.ZNF28.HEK293T 199 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 197 bp overlap
ZNF816 1 dataset
Motif ES_0h ES_0h-ZNF816_MA1719.2 15 bp overlap
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