chr12 : 123,995,003 123,996,059
1,056 bp 68 TFs 5 linked genes
This 1.1 kb open chromatin element is linked to 5 target genes and is bound by 68 transcription factors.
Linked Genes
5 genes
Gene Expression Dist. to TSS Distance Link type
RFLNA 22.2 kb Distal Multiome
ZNF664 22.2 kb Distal Multiome
CCDC92 22.6 kb Distal Multiome
DNAH10 233.1 kb Distal Multiome
ATP6V0A2 283.1 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:123,990,003 – 124,001,059
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
68 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_Bag-1L_KO_Veh GSE89938.AR.LNCaP_Bag-1L_KO_Veh 169 bp overlap
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 406 bp overlap
ATF4 3 datasets
ChIP Jurkat_ZBTB1-KO GSE145783.ATF4.Jurkat_ZBTB1-KO 204 bp overlap
ChIP Jurkat_ZBTB1-KO_Asp-deprivation GSE145783.ATF4.Jurkat_ZBTB1-KO_Asp-deprivation 284 bp overlap
ChIP Jurkat_ZBTB1-KO_Asp-deprivation_cDNA GSE145783.ATF4.Jurkat_ZBTB1-KO_Asp-deprivation_cDNA 305 bp overlap
BCL6 1 dataset
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 193 bp overlap
BCOR 2 datasets
ChIP K-562 ENCSR808AKZ.BCOR.K-562 257 bp overlap
ChIP K562 ENCFF343XWA 292 bp overlap
BHLHE40 2 datasets
ChIP IMR-90 ENCFF312JYK 285 bp overlap
ChIP IMR-90 ENCSR957KYB.BHLHE40.IMR-90 227 bp overlap
BRD2 1 dataset
ChIP SK-MEL-147_JQ1 GSE94488.BRD2.SK-MEL-147_JQ1 242 bp overlap
BRD4 5 datasets
ChIP CHL-1 GSE95585.BRD4.CHL-1 188 bp overlap
ChIP HCC1395 GSE63581.BRD4.HCC1395 272 bp overlap
ChIP HCC1395_JQ1 GSE63581.BRD4.HCC1395_JQ1 352 bp overlap
ChIP SUM159PT_100nMtrametinib_72h GSE87418.BRD4.SUM159PT_100nMtrametinib_72h 330 bp overlap
ChIP SUM159PT_30nMbortezomib_8h GSE87418.BRD4.SUM159PT_30nMbortezomib_8h 253 bp overlap
CASZ1 1 dataset
ChIP rhabdomyosarcoma_DOX GSE126142.CASZ1.rhabdomyosarcoma_DOX 354 bp overlap
CEBPB 1 dataset
ChIP IMR-90 ENCFF468UGY 251 bp overlap
CHD4 2 datasets
ChIP HaCaT GSE139685.CHD4.HaCaT 377 bp overlap
ChIP keratinocyte_CTR GSE139685.CHD4.keratinocyte_CTR 179 bp overlap
DPF2 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.DPF2.BIN-67_lentivirus-SMARCA4 480 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-T910M 634 bp overlap
ELF1 1 dataset
ChIP K-562 ENCSR000BMD.ELF1.K-562 135 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 193 bp overlap
ERG 2 datasets
ChIP aortic-endothelial-cell_D39 GSE139377.ERG.aortic-endothelial-cell_D39 105 bp overlap
ChIP aortic-endothelial-cell_D47 GSE139377.ERG.aortic-endothelial-cell_D47 58 bp overlap
ETS1 2 datasets
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 139 bp overlap
ChIP THP-6_shCtrl GSE138516.ETS1.THP-6_shCtrl 352 bp overlap
FOS 4 datasets
ChIP IMR-90 ENCFF179EDA 297 bp overlap
ChIP IMR-90 ENCFF179EDA 297 bp overlap
ChIP IMR-90 ENCSR124AIG.FOS.IMR-90 251 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 202 bp overlap
FOSL2 1 dataset
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 242 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 446 bp overlap
ChIP DE DE-FOXA2-2 353 bp overlap
GATA4 1 dataset
ChIP DE DE-GATA4-2 615 bp overlap
GATA6 8 datasets
ChIP DE DE-GATA6-1 365 bp overlap
ChIP DE DE-GATA6-2 611 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 662 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 925 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 457 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 311 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 762 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 516 bp overlap
HIF1A 1 dataset
ChIP U2OS_trough_DMOG GSE85096.HIF1A.U2OS_trough_DMOG 266 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 298 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 439 bp overlap
ChIP HAEC_IL1b_4h GSE89970.JUN.HAEC_IL1b_4h 216 bp overlap
ChIP HAEC_TNFa_4h GSE89970.JUN.HAEC_TNFa_4h 239 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 534 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUN.MCF10A-Er-Src_EtOH 130 bp overlap
JUNB 2 datasets
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 182 bp overlap
ChIP keratinocyte_CTR GSE139685.JUNB.keratinocyte_CTR 176 bp overlap
KDM1A 3 datasets
ChIP K-562_Wnt GSE117944.KDM1A.K-562_Wnt 164 bp overlap
ChIP K562 ENCFF934ZRG 307 bp overlap
ChIP keratinocyte_diff GSE57702.KDM1A.keratinocyte_diff 314 bp overlap
KLF4 2 datasets
ChIP HAP1 GSE130417.KLF4.HAP1 202 bp overlap
ChIP keratinocyte_diff GSE57702.KLF4.keratinocyte_diff 167 bp overlap
KMT2C 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2C.BIN-67_lentivirus-SMARCA4 432 bp overlap
KMT2D 1 dataset
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.KMT2D.BIN-67_lentivirus-SMARCA4 420 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 328 bp overlap
MAZ 1 dataset
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 136 bp overlap
MED1 3 datasets
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 202 bp overlap
ChIP hMSC-TERT4_D3 GSE104537.MED1.hMSC-TERT4_D3 273 bp overlap
ChIP hMSC-TERT4_adipocyte-D1 GSE113253.MED1.hMSC-TERT4_adipocyte-D1 211 bp overlap
MITF 1 dataset
ChIP melanocyte_CTR GSE50681.MITF.melanocyte_CTR 205 bp overlap
MYB 1 dataset
ChIP Jurkat GSE59657.MYB.Jurkat 215 bp overlap
MYC 1 dataset
ChIP HFF_OHT GSE65544.MYC.HFF_OHT 173 bp overlap
MYCN 1 dataset
ChIP RH4 GSE83726.MYCN.RH4 303 bp overlap
NCOR1 1 dataset
ChIP LS180 GSE39277.NCOR1.LS180 93 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 122 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 143 bp overlap
POLR2A 1 dataset
ChIP stomach ENCFF820WZN 345 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 849 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 627 bp overlap
PRKDC 1 dataset
ChIP fibroblast_OHT GSE55605.PRKDC.fibroblast_OHT 187 bp overlap
RAD21 1 dataset
ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 122 bp overlap
RBM25 1 dataset
ChIP K-562 ENCSR791OZM.RBM25.K-562 228 bp overlap
RBPJ 2 datasets
ChIP SCC_0h GSE156486.RBPJ.SCC_0h 280 bp overlap
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 342 bp overlap
RCOR1 3 datasets
ChIP IMR-90 ENCFF644MZN 267 bp overlap
ChIP IMR-90 ENCSR000EFG.RCOR1.IMR-90 323 bp overlap
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 233 bp overlap
RELA 18 datasets
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 264 bp overlap
ChIP aortic-endothelial-cell_IL1B_D11 GSE139377.RELA.aortic-endothelial-cell_IL1B_D11 162 bp overlap
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 223 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 223 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 379 bp overlap
ChIP aortic-endothelial-cell_IL1B_D25 GSE139377.RELA.aortic-endothelial-cell_IL1B_D25 209 bp overlap
ChIP aortic-endothelial-cell_IL1B_D26 GSE139377.RELA.aortic-endothelial-cell_IL1B_D26 231 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 286 bp overlap
ChIP aortic-endothelial-cell_IL1B_D28 GSE139377.RELA.aortic-endothelial-cell_IL1B_D28 180 bp overlap
ChIP aortic-endothelial-cell_IL1B_D35 GSE139377.RELA.aortic-endothelial-cell_IL1B_D35 174 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 371 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 353 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 135 bp overlap
ChIP aortic-endothelial-cell_IL1B_D53 GSE139377.RELA.aortic-endothelial-cell_IL1B_D53 135 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 193 bp overlap
ChIP aortic-endothelial-cell_IL1B_D7 GSE139377.RELA.aortic-endothelial-cell_IL1B_D7 277 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 232 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 358 bp overlap
RUNX1 1 dataset
ChIP K-562 ENCSR588AKU.RUNX1.K-562 136 bp overlap
SCRT1 2 datasets
ChIP HEK293 ENCFF513YVP 223 bp overlap
ChIP HEK293 ENCSR605MGM.SCRT1.HEK293 97 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 178 bp overlap
SMAD2 1 dataset
ChIP endoderm GSE29422.SMAD2.endoderm 148 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 601 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 1056 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 725 bp overlap
SMAD2_3 6 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 640 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 547 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 173 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 656 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 690 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 383 bp overlap
SMARCA4 4 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 63 bp overlap
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 251 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 611 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 796 bp overlap
SMARCC1 3 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 475 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4-T910M 744 bp overlap
ChIP DE_D1 S15-DE-d1-BAF155-exp1 298 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 455 bp overlap
SOX2 1 dataset
ChIP KYSE-70 GSE46837.SOX2.KYSE-70 173 bp overlap
SS18 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SS18.BIN-67_lentivirus-SMARCA4 483 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 703 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_L169A GSE139053.SS18-SSX.fibroblast_L169A 166 bp overlap
STAT3 4 datasets
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 264 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 268 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 231 bp overlap
ChIP SU-DHL-2 GSE50723.STAT3.SU-DHL-2 197 bp overlap
TEAD1 1 dataset
ChIP adipocyte GSE140782.TEAD1.adipocyte 192 bp overlap
TP63 1 dataset
ChIP BxPC-3 GSE115461.TP63.BxPC-3 179 bp overlap
ZFP3 2 datasets
ChIP SK-N-SH ENCFF981MBE 114 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 368 bp overlap
ZMYM3 3 datasets
ChIP K-562 ENCSR102KIN.ZMYM3.K-562 206 bp overlap
ChIP K-562_Ab_JH39-2-2F10 GSE97661.ZMYM3.K-562_Ab_JH39-2-2F10 227 bp overlap
ChIP K562 ENCFF361LXT 260 bp overlap
ZNF527 1 dataset
ChIP HEK293T GSE78099.ZNF527.HEK293T 299 bp overlap
ZNF629 2 datasets
ChIP Hep-G2 ENCSR363ASY.ZNF629.Hep-G2 234 bp overlap
ChIP HepG2 ENCFF490FFQ 256 bp overlap
ZNF92 1 dataset
ChIP retina_pigment GSE60024.ZNF92.retina_pigment 388 bp overlap