chr12 : 84,658,882 – 84,659,128

246 bp 96 TFs 0 linked genes

This 246 bp open chromatin element has no linked target genes and is bound by 96 transcription factors.

Linked Genes

No linked genes

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

96 transcription factors

ARID1A 1 dataset

ChIP NGP GSE134626.ARID1A.NGP 216 bp overlap

ATRX 1 dataset

ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 246 bp overlap

Arid3a 1 dataset

Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap

BRD2 1 dataset

ChIP K-562 GSE140325.BRD2.K-562 93 bp overlap

BRD4 3 datasets

ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 185 bp overlap

ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 246 bp overlap

ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 191 bp overlap

CDX2 1 dataset

Motif DE_12h DE_12h-CDX2_MA0465.3 8 bp overlap

EP300 2 datasets

ChIP neural ENCSR843ZUP.EP300.neural 246 bp overlap

ChIP neural cell ENCFF442QNK 246 bp overlap

ESR1 1 dataset

ChIP MCF-7_RUNX2_DOX GSE86538.ESR1.MCF-7_RUNX2_DOX 220 bp overlap

ESR2 2 datasets

Motif DE_12h DE_12h-ESR2_MA0258.2 15 bp overlap

Motif ES_0h ES_0h-ESR2_MA0258.2 15 bp overlap

EWSR1-FLI1 1 dataset

Motif DE_12h DE_12h-EWSR1-FLI1_MA0149.1 18 bp overlap

FOXA1 5 datasets

ChIP MCF-7 ERP001226.FOXA1.MCF-7 65 bp overlap

ChIP MCF-7_JC4697 GSE126004.FOXA1.MCF-7_JC4697 112 bp overlap

ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 138 bp overlap

ChIP T-47D_JC4747 GSE126004.FOXA1.T-47D_JC4747 171 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 245 bp overlap

FOXA2 1 dataset

ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 138 bp overlap

FOXD2 1 dataset

Motif DE_12h DE_12h-FOXD2_MA0847.4 11 bp overlap

FOXF2 1 dataset

Motif DE_12h DE_12h-FOXF2_MA0030.2 9 bp overlap

FOXH1 1 dataset

Motif DE_12h DE_12h-FOXH1_MA0479.2 8 bp overlap

FOXK1 1 dataset

Motif DE_12h DE_12h-FOXK1_MA0852.3 7 bp overlap

FOXK2 1 dataset

Motif DE_12h DE_12h-FOXK2_MA1103.3 7 bp overlap

FOXL1 1 dataset

Motif DE_12h DE_12h-FOXL1_MA0033.2 7 bp overlap

FOXO4 1 dataset

Motif DE_12h DE_12h-FOXO4_MA0848.1 7 bp overlap

FOXO6 1 dataset

Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap

FOXP2 2 datasets

Motif DE_12h DE_12h-FOXP2_MA0593.2 9 bp overlap

FOXP3 1 dataset

Motif DE_12h DE_12h-FOXP3_MA0850.1 7 bp overlap

Foxf1 1 dataset

Motif DE_12h DE_12h-Foxf1_MA1606.2 7 bp overlap

Foxo1 1 dataset

Motif DE_12h DE_12h-Foxo1_MA0480.3 7 bp overlap

Foxo3 1 dataset

Motif DE_12h DE_12h-Foxo3_MA0157.4 7 bp overlap

Foxq1 1 dataset

Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap

GATA3 4 datasets

ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 192 bp overlap

ChIP Kelly GSE65664.GATA3.Kelly 204 bp overlap

ChIP Kelly GSE94822.GATA3.Kelly 122 bp overlap

ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 145 bp overlap

GATA3_Nter 1 dataset

ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 158 bp overlap

GATA4 1 dataset

ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 239 bp overlap

GATA6 4 datasets

ChIP DE_D1 S14-DE-d1-GATA6-exp1 219 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 202 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 169 bp overlap

ChIP pancreatic-progenitor_PP1 GSE104840.GATA6.pancreatic-progenitor_PP1 184 bp overlap

HAND2 3 datasets

ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 246 bp overlap

ChIP Kelly GSE94822.HAND2.Kelly 187 bp overlap

ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 246 bp overlap

HOXB4 1 dataset

Motif DE_12h DE_12h-HOXB4_MA1499.2 6 bp overlap

HOXC4 1 dataset

Motif DE_12h DE_12h-HOXC4_MA1504.2 6 bp overlap

HOXD4 1 dataset

Motif DE_12h DE_12h-HOXD4_MA1507.2 6 bp overlap

HSF4 1 dataset

Motif DE_12h DE_12h-HSF4_MA0771.1 13 bp overlap

Hand1::Tcf3 1 dataset

Motif DE_12h DE_12h-Hand1Tcf3_MA0092.2 9 bp overlap

ISL1 1 dataset

ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 246 bp overlap

MEIS1 2 datasets

Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap

Motif ES_0h ES_0h-MEIS1_MA0498.3 5 bp overlap

MYCN 2 datasets

ChIP Kelly GSE94822.MYCN.Kelly 240 bp overlap

ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 146 bp overlap

MZF1 1 dataset

ChIP HEK293 ENCSR298QUH.MZF1.HEK293 246 bp overlap

Msgn1 1 dataset

Motif DE_12h DE_12h-Msgn1_MA1524.3 10 bp overlap

NEUROD1 1 dataset

ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 132 bp overlap

NFATC3 1 dataset

Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap

NOTCH1 1 dataset

ChIP HPBALL GSE39263.NOTCH1.HPBALL 61 bp overlap

NR2C1 2 datasets

Motif DE_12h DE_12h-NR2C1_MA1535.2 6 bp overlap

Motif ES_0h ES_0h-NR2C1_MA1535.2 6 bp overlap

NR2C2 2 datasets

Motif DE_12h DE_12h-NR2C2_MA1536.2 6 bp overlap

Motif ES_0h ES_0h-NR2C2_MA1536.2 6 bp overlap

NR2F1 2 datasets

Motif DE_12h DE_12h-NR2F1_MA0017.3 12 bp overlap

Motif ES_0h ES_0h-NR2F1_MA0017.3 12 bp overlap

NR6A1 1 dataset

Motif DE_12h DE_12h-NR6A1_MA1541.2 14 bp overlap

NRIP1 1 dataset

ChIP MCF-7 ERP005838.NRIP1.MCF-7 161 bp overlap

Nfatc1 1 dataset

Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap

Nr1H2 2 datasets

Motif DE_12h DE_12h-Nr1H2_MA1996.2 6 bp overlap

Motif ES_0h ES_0h-Nr1H2_MA1996.2 6 bp overlap

Nr1H4 2 datasets

Motif DE_12h DE_12h-Nr1H4_MA1110.3 6 bp overlap

Motif ES_0h ES_0h-Nr1H4_MA1110.3 6 bp overlap

Nr1h3 2 datasets

Motif DE_12h DE_12h-Nr1h3_MA2337.1 6 bp overlap

Motif ES_0h ES_0h-Nr1h3_MA2337.1 6 bp overlap

PDX1 2 datasets

ChIP hiPSC GSE125768.PDX1.hiPSC 169 bp overlap

ChIP hiPSC_derived_PPs GSE106949.PDX1.hiPSC_derived_PPs 161 bp overlap

PHOX2B 2 datasets

ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 207 bp overlap

ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 138 bp overlap

PKNOX1 2 datasets

ChIP HEK293T ENCFF174WDB 156 bp overlap

ChIP HEK293T ENCSR233FAG.PKNOX1.HEK293T 189 bp overlap

PKNOX2 2 datasets

Motif DE_12h DE_12h-PKNOX2_MA0783.1 12 bp overlap

Motif ES_0h ES_0h-PKNOX2_MA0783.1 12 bp overlap

POLR2A 1 dataset

ChIP neural cell ENCFF604SPB 184 bp overlap

POU1F1 1 dataset

Motif DE_12h DE_12h-POU1F1_MA0784.3 14 bp overlap

POU2F1::SOX2 1 dataset

Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap

POU2F2 1 dataset

Motif DE_12h DE_12h-POU2F2_MA0507.3 13 bp overlap

POU4F2 1 dataset

Motif DE_12h DE_12h-POU4F2_MA0683.2 15 bp overlap

POU6F1 1 dataset

Motif DE_12h DE_12h-POU6F1_MA1549.2 7 bp overlap

POU6F2 1 dataset

Motif DE_12h DE_12h-POU6F2_MA0793.2 9 bp overlap

Prdm14 1 dataset

Motif DE_12h DE_12h-Prdm14_MA1998.2 8 bp overlap

Prdm15 1 dataset

Motif DE_12h DE_12h-Prdm15_MA1616.2 11 bp overlap

RAD21 1 dataset

ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 129 bp overlap

RARA 4 datasets

Motif DE_12h DE_12h-RARA_MA0730.1 17 bp overlap

Motif ES_0h ES_0h-RARA_MA0730.1 17 bp overlap

ChIP hiPSC_D2 GSE132532.RARA.hiPSC_D2 229 bp overlap

ChIP hiPSC_D5 GSE132532.RARA.hiPSC_D5 246 bp overlap

RARA::RXRA 2 datasets

Motif DE_12h DE_12h-RARARXRA_MA0159.1 17 bp overlap

Motif ES_0h ES_0h-RARARXRA_MA0159.1 17 bp overlap

RARA::RXRG 2 datasets

Motif DE_12h DE_12h-RARARXRG_MA1149.2 17 bp overlap

Motif ES_0h ES_0h-RARARXRG_MA1149.2 17 bp overlap

REST 2 datasets

ChIP neural ENCSR000BTV.REST.neural 232 bp overlap

ChIP neural cell ENCFF882LXX 246 bp overlap

RXR 1 dataset

ChIP pancreatic-progenitor_PP1 GSE104840.RXR.pancreatic-progenitor_PP1 232 bp overlap

Rarb 2 datasets

Motif DE_12h DE_12h-Rarb_MA0858.1 17 bp overlap

Motif ES_0h ES_0h-Rarb_MA0858.1 17 bp overlap

SIX2 2 datasets

ChIP HEK GSE73865.SIX2.HEK 171 bp overlap

ChIP kidney_fetal_17w GSE75948.SIX2.kidney_fetal_17w 162 bp overlap

SMAD2 1 dataset

Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap

SMAD2-3 2 datasets

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 246 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 246 bp overlap

SMAD2_3 2 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 246 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 246 bp overlap

SMARCA4 4 datasets

ChIP NGP GSE134626.SMARCA4.NGP 136 bp overlap

ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 197 bp overlap

ChIP NSC GSE125033.SMARCA4.NSC 188 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 138 bp overlap

SOX10 2 datasets

Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap

Motif ES_0h ES_0h-SOX10_MA0442.3 6 bp overlap

SOX2 1 dataset

ChIP RENVM GSE49404.SOX2.RENVM 120 bp overlap

TAF1 1 dataset

ChIP PFSK-1 ENCFF982LZL 246 bp overlap

TBX2 2 datasets

ChIP Kelly GSE94822.TBX2.Kelly 246 bp overlap

ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 246 bp overlap

TEAD4 2 datasets

ChIP BE2C GSE84389.TEAD4.BE2C 189 bp overlap

ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 189 bp overlap

TGIF1 2 datasets

Motif DE_12h DE_12h-TGIF1_MA0796.1 12 bp overlap

Motif ES_0h ES_0h-TGIF1_MA0796.1 12 bp overlap

TWIST1 2 datasets

ChIP BE2C GSE80151.TWIST1.BE2C 196 bp overlap

ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 196 bp overlap

Tbx6 2 datasets

Motif DE_12h DE_12h-Tbx6_MA1567.3 9 bp overlap

Motif ES_0h ES_0h-Tbx6_MA1567.3 9 bp overlap

Tfcp2l1 1 dataset

Motif DE_12h DE_12h-Tfcp2l1_MA0145.2 14 bp overlap

WT1 1 dataset

ChIP HEK293 ENCSR966PJJ.WT1.HEK293 174 bp overlap

YY1 1 dataset

ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 232 bp overlap

ZNF282 1 dataset

Motif DE_12h DE_12h-ZNF282_MA1154.2 15 bp overlap

ZNF384 1 dataset

Motif DE_12h DE_12h-ZNF384_MA1125.2 8 bp overlap

ZNF418 1 dataset

Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap

ZNF558 1 dataset

Motif DE_12h DE_12h-ZNF558_MA2335.1 29 bp overlap

ZNF652 2 datasets

Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap

Motif ES_0h ES_0h-ZNF652_MA1657.2 9 bp overlap

ZNF701 1 dataset

Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap

ZNF85 1 dataset

Motif DE_12h DE_12h-ZNF85_MA1720.2 12 bp overlap