chr12 : 57,842,638 – 57,842,857

219 bp 94 TFs 1 linked gene

This 219 bp open chromatin element is linked to CTDSP2 and is bound by 94 transcription factors.

Linked Genes

1 gene

Gene	Expression	Dist. to TSS	Distance	Link type
CTDSP2		3.7 kb	Proximal	Proximity

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

94 transcription factors

APC 1 dataset

ChIP HCT-116 GSE103894.APC.HCT-116 197 bp overlap

ARID2 1 dataset

ChIP NGP_ARID1A-mut2 GSE134626.ARID2.NGP_ARID1A-mut2 219 bp overlap

ARNTL 1 dataset

ChIP U2OS GSE44236.ARNTL.U2OS 97 bp overlap

ASH2L 3 datasets

ChIP H1 ENCFF399KAM 219 bp overlap

ChIP WA01 ENCSR850KIP.ASH2L.WA01 219 bp overlap

ATF2 1 dataset

ChIP WA01 ENCSR000BQU.ATF2.WA01 66 bp overlap

BRD1 1 dataset

ChIP HUES-64 GSE104059.BRD1.HUES-64 219 bp overlap

BRD4 1 dataset

ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 219 bp overlap

CDX2 2 datasets

Motif DE_12h DE_12h-CDX2_MA0465.3 8 bp overlap

ChIP LS180_125 GSE31939.CDX2.LS180_125 117 bp overlap

CHD1 2 datasets

ChIP H1 ENCFF998XEK 219 bp overlap

ChIP WA01 ENCSR000AQK.CHD1.WA01 78 bp overlap

CTCFL 1 dataset

Motif DE_12h DE_12h-CTCFL_MA1102.3 8 bp overlap

Cebpa 1 dataset

ChIP BLaER1 ENCFF364PUR 219 bp overlap

E2F6 2 datasets

Motif DE_12h DE_12h-E2F6_MA0471.3 8 bp overlap

ChIP WA01 ENCSR000BSI.E2F6.WA01 160 bp overlap

E2F8 1 dataset

Motif DE_12h DE_12h-E2F8_MA0865.3 9 bp overlap

EGR1 2 datasets

ChIP Hep-G2 ENCSR026GSW.EGR1.Hep-G2 193 bp overlap

ChIP K562 ENCFF006PJY 177 bp overlap

ESR1 1 dataset

ChIP T-47D_Y537S_E2 GSE148277.ESR1.T-47D_Y537S_E2 141 bp overlap

Elf5 1 dataset

Motif DE_12h DE_12h-Elf5_MA0136.4 8 bp overlap

FERD3L 1 dataset

Motif DE_12h DE_12h-FERD3L_MA1485.1 14 bp overlap

FOXA1 6 datasets

Motif DE_12h DE_12h-FOXA1_MA0148.5 8 bp overlap

ChIP MCF-7 ERP000380.FOXA1.MCF-7 180 bp overlap

ChIP T-47D_8h GSE137579.FOXA1.T-47D_8h 150 bp overlap

ChIP T-47D_DMSO GSE84593.FOXA1.T-47D_DMSO 181 bp overlap

ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 188 bp overlap

ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 165 bp overlap

FOXA2 1 dataset

Motif DE_12h DE_12h-FOXA2_MA0047.4 8 bp overlap

FOXG1 1 dataset

Motif DE_12h DE_12h-FOXG1_MA0613.1 8 bp overlap

FOXK1 1 dataset

Motif DE_12h DE_12h-FOXK1_MA0852.3 7 bp overlap

FOXK2 1 dataset

Motif DE_12h DE_12h-FOXK2_MA1103.3 7 bp overlap

FOXL1 1 dataset

Motif DE_12h DE_12h-FOXL1_MA0033.2 7 bp overlap

FOXO4 1 dataset

Motif DE_12h DE_12h-FOXO4_MA0848.1 7 bp overlap

FOXO6 1 dataset

Motif DE_12h DE_12h-FOXO6_MA0849.1 7 bp overlap

FOXP3 1 dataset

Motif DE_12h DE_12h-FOXP3_MA0850.1 7 bp overlap

FOXS1 1 dataset

Motif DE_12h DE_12h-FOXS1_MA2118.1 8 bp overlap

Foxf1 1 dataset

Motif DE_12h DE_12h-Foxf1_MA1606.2 7 bp overlap

Foxj2 1 dataset

Motif DE_12h DE_12h-Foxj2_MA0614.1 8 bp overlap

Foxo1 1 dataset

Motif DE_12h DE_12h-Foxo1_MA0480.3 7 bp overlap

Foxo3 1 dataset

Motif DE_12h DE_12h-Foxo3_MA0157.4 7 bp overlap

Foxq1 1 dataset

Motif DE_12h DE_12h-Foxq1_MA0040.2 10 bp overlap

GLIS1 2 datasets

ChIP HEK293 ENCFF299RSE 219 bp overlap

ChIP HEK293 ENCSR482BBZ.GLIS1.HEK293 219 bp overlap

GLIS2 1 dataset

Motif DE_12h DE_12h-GLIS2_MA0736.1 14 bp overlap

GLIS3 1 dataset

ChIP H9_plus GSE109562.GLIS3.H9_plus 219 bp overlap

IKZF2 1 dataset

Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap

IKZF3 2 datasets

ChIP HEK293 ENCFF518OXG 219 bp overlap

ChIP HEK293 ENCSR304AMN.IKZF3.HEK293 219 bp overlap

INSM1 1 dataset

Motif DE_12h DE_12h-INSM1_MA0155.1 12 bp overlap

KAT7 1 dataset

ChIP OCI-AML-3 GSE133516.KAT7.OCI-AML-3 153 bp overlap

KLF10 1 dataset

Motif DE_12h DE_12h-KLF10_MA1511.2 9 bp overlap

KLF11 1 dataset

Motif DE_12h DE_12h-KLF11_MA1512.2 10 bp overlap

KLF14 1 dataset

Motif DE_12h DE_12h-KLF14_MA0740.2 9 bp overlap

KLF15 1 dataset

Motif DE_12h DE_12h-KLF15_MA1513.2 8 bp overlap

KMT2A 3 datasets

ChIP MV4-11 GSE79899.KMT2A.MV4-11 118 bp overlap

ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 192 bp overlap

ChIP THP-1 GSE79899.KMT2A.THP-1 85 bp overlap

MAX 2 datasets

ChIP H1 ENCFF914VQY 219 bp overlap

ChIP NCI-H2171 GSE41105.MAX.NCI-H2171 119 bp overlap

MED1 1 dataset

ChIP G296S_4 GSE85628.MED1.G296S_4 131 bp overlap

MNT 1 dataset

ChIP MCF-7 ENCFF144ZFZ 219 bp overlap

MTA3 1 dataset

ChIP GM12878 ENCFF681QPL 173 bp overlap

MXI1 2 datasets

ChIP IMR-90 ENCSR000EFE.MXI1.IMR-90 166 bp overlap

ChIP neural ENCSR934NHU.MXI1.neural 183 bp overlap

MYCN 1 dataset

ChIP COG-N-415 GSE138295.MYCN.COG-N-415 219 bp overlap

NANOG 1 dataset

ChIP HUES-8 GSE109524.NANOG.HUES-8 163 bp overlap

NCAPH2 1 dataset

ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 182 bp overlap

PATZ1 1 dataset

ChIP HEK293 ENCSR966ULI.PATZ1.HEK293 204 bp overlap

PHIP 1 dataset

ChIP HEK293_ab833 GSE101646.PHIP.HEK293_ab833 98 bp overlap

POLR2A 3 datasets

ChIP H1 ENCFF566JSR 219 bp overlap

ChIP H1 ENCFF833NJP 219 bp overlap

ChIP neural cell ENCFF604SPB 159 bp overlap

RAD21 2 datasets

ChIP IMR-90 ENCSR000EFJ.RAD21.IMR-90 156 bp overlap

ChIP neural ENCSR198ZYJ.RAD21.neural 182 bp overlap

RARA::RXRA 1 dataset

Motif DE_12h DE_12h-RARARXRA_MA0159.1 17 bp overlap

RARB 1 dataset

Motif DE_12h DE_12h-RARB_MA1552.2 13 bp overlap

RBBP5 2 datasets

ChIP H1 ENCFF905HFL 219 bp overlap

ChIP WA01 ENCSR000AQC.RBBP5.WA01 159 bp overlap

REST 2 datasets

ChIP neural ENCSR000BTV.REST.neural 219 bp overlap

ChIP neural cell ENCFF882LXX 219 bp overlap

SMARCA4 8 datasets

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 219 bp overlap

ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 219 bp overlap

ChIP NGP GSE134626.SMARCA4.NGP 210 bp overlap

ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 87 bp overlap

ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 219 bp overlap

ChIP NSC GSE125033.SMARCA4.NSC 219 bp overlap

ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 219 bp overlap

ChIP hiPSC GSE124903.SMARCA4.hiPSC 183 bp overlap

SMARCC1 1 dataset

ChIP hiPSC GSE124903.SMARCC1.hiPSC 217 bp overlap

SOX10 1 dataset

Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap

SOX2 2 datasets

ChIP HNSC GSE69479.SOX2.HNSC 194 bp overlap

ChIP hiPSC GSE56567.SOX2.hiPSC 178 bp overlap

SP1 2 datasets

Motif DE_12h DE_12h-SP1_MA0079.5 9 bp overlap

ChIP WA01 ENCSR000BIR.SP1.WA01 130 bp overlap

SP2 2 datasets

Motif DE_12h DE_12h-SP2_MA0516.3 9 bp overlap

ChIP HEK293 ENCFF181QXT 219 bp overlap

SP3 1 dataset

ChIP HEK293 ENCFF087XLA 219 bp overlap

SP5 1 dataset

ChIP Hep-G2 ENCSR019NPF.SP5.Hep-G2 160 bp overlap

SP9 1 dataset

Motif DE_12h DE_12h-SP9_MA1564.2 10 bp overlap

SRSF3 1 dataset

ChIP K-562 GSE120104.SRSF3.K-562 61 bp overlap

Sox11 1 dataset

Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap

TAF1 4 datasets

ChIP H1 ENCFF478SZO 219 bp overlap

ChIP WA01 ENCSR000BHO.TAF1.WA01 219 bp overlap

ChIP neural ENCSR000BTX.TAF1.neural 183 bp overlap

ChIP neural cell ENCFF468SPD 219 bp overlap

TBP 4 datasets

ChIP hESC GSE122298.TBP.hESC 203 bp overlap

ChIP hESC_10h GSE122298.TBP.hESC_10h 183 bp overlap

ChIP hESC_2h GSE122298.TBP.hESC_2h 139 bp overlap

ChIP hESC_8h GSE122298.TBP.hESC_8h 181 bp overlap

TBX18 1 dataset

Motif DE_12h DE_12h-TBX18_MA1565.2 9 bp overlap

TFDP1 1 dataset

Motif DE_12h DE_12h-TFDP1_MA1122.2 8 bp overlap

THAP1 1 dataset

Motif DE_12h DE_12h-THAP1_MA0597.3 8 bp overlap

TP53 2 datasets

ChIP MCF-7_nutlin GSE86164.TP53.MCF-7_nutlin 180 bp overlap

ChIP SaOS-2 GSE15780.TP53.SaOS-2 162 bp overlap

ZBTB17 1 dataset

ChIP HEK293 ENCFF865LIO 170 bp overlap

ZFP14 1 dataset

Motif DE_12h DE_12h-ZFP14_MA1972.1 15 bp overlap

ZIC2 1 dataset

ChIP HEK293 ENCFF033NQQ 217 bp overlap

ZNF135 1 dataset

Motif DE_12h DE_12h-ZNF135_MA1587.1 14 bp overlap

ZNF157 1 dataset

Motif DE_12h DE_12h-ZNF157_MA2331.1 21 bp overlap

ZNF16 1 dataset

Motif DE_12h DE_12h-ZNF16_MA1654.2 21 bp overlap

ZNF263 1 dataset

ChIP HEK293 ENCFF336CWQ 219 bp overlap

ZNF281 2 datasets

Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap

ZNF324 1 dataset

Motif DE_12h DE_12h-ZNF324_MA1977.2 14 bp overlap

ZNF460 1 dataset

Motif DE_12h DE_12h-ZNF460_MA1596.1 16 bp overlap

ZNF530 2 datasets

Motif DE_12h DE_12h-ZNF530_MA1981.2 14 bp overlap

ZNF600 2 datasets

ChIP HEK293 ENCFF785JSX 139 bp overlap

ChIP HEK293 ENCFF785JSX 128 bp overlap

ZNF667 1 dataset

Motif DE_12h DE_12h-ZNF667_MA1984.2 11 bp overlap

ZNF682 1 dataset

Motif DE_12h DE_12h-ZNF682_MA1599.2 11 bp overlap

Zic1::Zic2 1 dataset

Motif DE_12h DE_12h-Zic1Zic2_MA1628.2 7 bp overlap

Zic2 1 dataset

Motif DE_12h DE_12h-Zic2_MA1629.2 9 bp overlap

Zic3 1 dataset

Motif DE_12h DE_12h-Zic3_MA0697.3 7 bp overlap