chr12 : 24,244,240 24,245,079
839 bp 108 TFs 0 linked genes
This 839 bp open chromatin element has no linked target genes and is bound by 108 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr12:24,239,240 – 24,250,079
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
108 transcription factors
Source
Cell type
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 251 bp overlap
ARNTL 1 dataset
ChIP U2OS GSE44236.ARNTL.U2OS 254 bp overlap
Ascl2 1 dataset
Motif DE_12h DE_12h-Ascl2_MA0816.1 10 bp overlap
Atoh1 1 dataset
Motif DE_12h DE_12h-Atoh1_MA0461.3 8 bp overlap
BHLHE22 2 datasets
Motif DE_12h DE_12h-BHLHE22_MA0818.2 10 bp overlap
Motif DE_12h DE_12h-BHLHE22_MA1635.2 6 bp overlap
BHLHE23 1 dataset
Motif DE_12h DE_12h-BHLHE23_MA0817.2 10 bp overlap
BRD4 1 dataset
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 328 bp overlap
CHD4 1 dataset
ChIP macrophage GSE136216.CHD4.macrophage 377 bp overlap
CREBBP 2 datasets
ChIP keratinocyte GSE140991.CREBBP.keratinocyte 169 bp overlap
ChIP keratinocyte_KLF3i GSE140991.CREBBP.keratinocyte_KLF3i 151 bp overlap
CTCF 6 datasets
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 154 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 294 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 134 bp overlap
ChIP islet GSE23784.CTCF.islet 55 bp overlap
ChIP primary-epidermal-keratinocyte_diff_d0 GSE84657.CTCF.primary-epidermal-keratinocyte_diff_d0 97 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 195 bp overlap
Crx 1 dataset
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 139 bp overlap
Dmbx1 1 dataset
Motif DE_12h DE_12h-Dmbx1_MA0883.2 10 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 133 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 172 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 325 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 224 bp overlap
ESR1 1 dataset
ChIP MCF-7_E2 GSE14664.ESR1.MCF-7_E2 94 bp overlap
FOS 4 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 696 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 197 bp overlap
ChIP MCF-7 ENCFF282FWZ 224 bp overlap
ChIP MCF-7 ENCSR569XNP.FOS.MCF-7 248 bp overlap
FOXA1 8 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 251 bp overlap
ChIP CFPAC-1_FOXA1-KO GSE119930.FOXA1.CFPAC-1_FOXA1-KO 197 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 239 bp overlap
ChIP LNCaP-C4-2B_CST GSE123618.FOXA1.LNCaP-C4-2B_CST 113 bp overlap
ChIP NCI-H3122 GSE39998.FOXA1.NCI-H3122 126 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 385 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 299 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 397 bp overlap
FOXA2 4 datasets
ChIP CFPAC-1 GSE119930.FOXA2.CFPAC-1 198 bp overlap
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 253 bp overlap
ChIP CFPAC-1_HNF1B-KO GSE119930.FOXA2.CFPAC-1_HNF1B-KO 124 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 195 bp overlap
GRHL2 1 dataset
ChIP HBE GSE46194.GRHL2.HBE 167 bp overlap
GSC 1 dataset
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
GSC2 1 dataset
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
HDAC2 1 dataset
ChIP RH4_DMSO-6H_bioMerck GSE116344.HDAC2.RH4_DMSO-6H_bioMerck 158 bp overlap
HNF1B 1 dataset
ChIP PDAC GSE64557.HNF1B.PDAC 235 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 172 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 150 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 299 bp overlap
JUN 6 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 227 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 370 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 273 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 290 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 222 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUN.MCF10A-Er-Src_EtOH 151 bp overlap
JUNB 2 datasets
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 650 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUNB.MCF10A-Er-Src_EtOH 157 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 519 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 442 bp overlap
MAML1 1 dataset
ChIP SCC_4h GSE156486.MAML1.SCC_4h 152 bp overlap
MAZ 1 dataset
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
MYBL2 1 dataset
Motif DE_12h DE_12h-MYBL2_MA0777.1 15 bp overlap
MYOG 1 dataset
Motif DE_12h DE_12h-MYOG_MA0500.3 8 bp overlap
NANOG 2 datasets
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 839 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 104 bp overlap
NEUROG1 1 dataset
Motif DE_12h DE_12h-NEUROG1_MA0623.2 10 bp overlap
NFATC3 1 dataset
Motif DE_12h DE_12h-NFATC3_MA0625.3 6 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 87 bp overlap
NHLH1 1 dataset
Motif DE_12h DE_12h-NHLH1_MA0048.3 9 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 75 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 149 bp overlap
NR2F1 1 dataset
Motif DE_12h DE_12h-NR2F1_MA1537.2 13 bp overlap
Nfat5 1 dataset
Motif DE_12h DE_12h-Nfat5_MA0606.3 8 bp overlap
Nfatc1 1 dataset
Motif DE_12h DE_12h-Nfatc1_MA0624.3 6 bp overlap
OTX1 1 dataset
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
OTX2 1 dataset
Motif DE_12h DE_12h-OTX2_MA0712.3 7 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PDX1 1 dataset
ChIP islet ERP001456.PDX1.islet 141 bp overlap
PITX1 1 dataset
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
PITX2 1 dataset
Motif DE_12h DE_12h-PITX2_MA1547.2 8 bp overlap
PITX3 1 dataset
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
PLAG1 1 dataset
Motif DE_12h DE_12h-PLAG1_MA0163.1 14 bp overlap
POU5F1 1 dataset
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 189 bp overlap
PPARD 1 dataset
Motif DE_12h DE_12h-PPARD_MA1550.2 14 bp overlap
RBPJ 2 datasets
ChIP SCC_0h GSE156486.RBPJ.SCC_0h 148 bp overlap
ChIP SCC_4h GSE156486.RBPJ.SCC_4h 194 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 386 bp overlap
RELA 1 dataset
ChIP FaDu_LPS GSE132018.RELA.FaDu_LPS 284 bp overlap
REST 1 dataset
ChIP colorectal-cancer_shCTRL_intact GSE112555.REST.colorectal-cancer_shCTRL_intact 103 bp overlap
RHOXF1 1 dataset
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
RXRB 1 dataset
Motif DE_12h DE_12h-RXRB_MA0855.1 14 bp overlap
RXRG 1 dataset
Motif DE_12h DE_12h-RXRG_MA0856.1 14 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Rxra 1 dataset
Motif DE_12h DE_12h-Rxra_MA0512.2 14 bp overlap
SMAD3 2 datasets
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 98 bp overlap
ChIP PC-3_hypoxia GSE106305.SMAD3.PC-3_hypoxia 164 bp overlap
SMARCA4 3 datasets
ChIP hiPSC GSE124903.SMARCA4.hiPSC 208 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 96 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 163 bp overlap
SOX2 2 datasets
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 103 bp overlap
ChIP TT GSE46837.SOX2.TT 112 bp overlap
SOX8 1 dataset
ChIP RH4_DMSO-6H GSE116344.SOX8.RH4_DMSO-6H 221 bp overlap
SPIB 1 dataset
ChIP OCI-Ly3_SHSPIB GSE56857.SPIB.OCI-Ly3_SHSPIB 183 bp overlap
STAT1 3 datasets
ChIP FaDu_BB608 GSE78212.STAT1.FaDu_BB608 244 bp overlap
ChIP FaDu_DMSO GSE78212.STAT1.FaDu_DMSO 217 bp overlap
ChIP FaDu_DMSO GSE78212.STAT1.FaDu_DMSO 225 bp overlap
STAT3 16 datasets
ChIP FaDu_BB608 GSE78212.STAT3.FaDu_BB608 170 bp overlap
ChIP FaDu_DMSO GSE78212.STAT3.FaDu_DMSO 269 bp overlap
ChIP FaDu_DMSO GSE78212.STAT3.FaDu_DMSO 261 bp overlap
ChIP HCC1143_EtOH GSE85579.STAT3.HCC1143_EtOH 142 bp overlap
ChIP HCC70 GSE152203.STAT3.HCC70 154 bp overlap
ChIP HCC70_EtOH GSE85579.STAT3.HCC70_EtOH 179 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 183 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 188 bp overlap
ChIP MCF-10A ENCSR000DOZ.STAT3.MCF-10A 175 bp overlap
ChIP MCF-7_jc5838 GSE126004.STAT3.MCF-7_jc5838 150 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 110 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.STAT3.MCF10A-Er-Src_EtOH 162 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 157 bp overlap
ChIP MDA-MB-468_EtOH GSE85579.STAT3.MDA-MB-468_EtOH 132 bp overlap
ChIP NCI-H358 GSE79707.STAT3.NCI-H358 196 bp overlap
ChIP T-47D_JC5056 GSE126004.STAT3.T-47D_JC5056 111 bp overlap
TBP 1 dataset
ChIP K-562 GSE55306.TBP.K-562 220 bp overlap
TBX19 1 dataset
Motif DE_12h DE_12h-TBX19_MA0804.2 17 bp overlap
TBXT 1 dataset
Motif DE_12h DE_12h-TBXT_MA0009.2 16 bp overlap
TCF21 1 dataset
Motif DE_12h DE_12h-TCF21_MA1568.2 10 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 135 bp overlap
TFAP2A 2 datasets
Motif DE_12h DE_12h-TFAP2A_MA0810.2 11 bp overlap
Motif DE_12h DE_12h-TFAP2A_MA0872.1 13 bp overlap
TFAP2B 1 dataset
Motif DE_12h DE_12h-TFAP2B_MA0813.1 13 bp overlap
TFAP2C 3 datasets
Motif DE_12h DE_12h-TFAP2C_MA0815.1 13 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 460 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 262 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
VEZF1 1 dataset
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
ZBTB24 1 dataset
Motif DE_12h DE_12h-ZBTB24_MA2330.1 10 bp overlap
ZNF148 1 dataset
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
ZNF184 1 dataset
Motif DE_12h DE_12h-ZNF184_MA2120.1 13 bp overlap
ZNF354A 1 dataset
Motif DE_12h DE_12h-ZNF354A_MA1978.2 20 bp overlap
ZNF418 1 dataset
Motif DE_12h DE_12h-ZNF418_MA1980.1 15 bp overlap
ZNF652 1 dataset
Motif DE_12h DE_12h-ZNF652_MA1657.2 9 bp overlap
ZNF677 1 dataset
Motif DE_12h DE_12h-ZNF677_MA2101.1 12 bp overlap
ZNF707 1 dataset
Motif DE_12h DE_12h-ZNF707_MA1715.1 15 bp overlap
ZNF816 1 dataset
Motif DE_12h DE_12h-ZNF816_MA1719.2 15 bp overlap
ZSCAN4 2 datasets
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
ChIP HEK293 ENCFF381BKT 71 bp overlap