chr11:47,508,005–47,509,036

chr11 : 47,508,005 – 47,509,036

1,031 bp 73 TFs 13 linked genes

This 1.0 kb open chromatin element is linked to 13 target genes and is bound by 73 transcription factors.

Linked Genes

13 genes

Gene	Expression	Dist. to TSS	Distance	Link type
CELF1		44.6 kb	Distal	Multiome
PTPMT1		57.1 kb	Distal	Multiome
KBTBD4		70.4 kb	Distal	Multiome
NDUFS3		70.5 kb	Distal	Multiome
PSMC3		82.1 kb	Distal	Multiome
C1QTNF4		85.9 kb	Distal	Multiome
SLC39A13		99.9 kb	Distal	Multiome
MTCH2		134.0 kb	Distal	Multiome
MADD		238.9 kb	Distal	Multiome
FNBP4		258.7 kb	Distal	Multiome
NR1H3		259.6 kb	Distal	Multiome
ACP2		259.7 kb	Distal	Multiome
DDB2		294.1 kb	Distal	Multiome

Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding

73 transcription factors

ARID1B 1 dataset

ChIP K-562 ENCSR822CCM.ARID1B.K-562 228 bp overlap

ASH2L 1 dataset

ChIP GM12878 ENCSR849WCQ.ASH2L.GM12878 51 bp overlap

ChIP GM12878 ENCFF037PYH 62 bp overlap

BRD4 2 datasets

ChIP CLL_patient2_4h_CpG GSE109411.BRD4.CLL_patient2_4h_CpG 247 bp overlap

ChIP Jurkat GSE83777.BRD4.Jurkat 152 bp overlap

CEBPB 1 dataset

ChIP monocyte_IFNg-LPS GSE120943.CEBPB.monocyte_IFNg-LPS 149 bp overlap

ChIP H1 ENCFF998XEK 595 bp overlap

Cebpa 3 datasets

ChIP BLaER1 ENCFF031ISE 229 bp overlap

ChIP BLaER1 ENCFF093OYK 293 bp overlap

ChIP BLaER1 ENCFF364PUR 199 bp overlap

DACH1 1 dataset

ChIP K562 ENCFF574LOW 381 bp overlap

ChIP NTERA2 GSE58641.DDX5.NTERA2 431 bp overlap

ChIP K562 ENCFF775HUO 577 bp overlap

ChIP GM12878 ENCFF266FYW 473 bp overlap

EGR1 5 datasets

ChIP GM12878 ENCFF092DJY 120 bp overlap

ChIP K-562 ENCSR211LTF.EGR1.K-562 54 bp overlap

ChIP K562 ENCFF006PJY 137 bp overlap

ChIP K562 ENCFF113OPQ 295 bp overlap

ChIP K562 ENCFF895KGN 206 bp overlap

ChIP Jurkat GSE49091.ERG.Jurkat 247 bp overlap

ChIP CTV-1_DSG GSE128835.ETS1.CTV-1_DSG 125 bp overlap

ChIP ProEs GSE59087.EZH1.ProEs 132 bp overlap

FOXA1 8 datasets

ChIP LNCaP-abl GSE63034.FOXA1.LNCaP-abl 180 bp overlap

ChIP LNCaP_GSK GSE148926.FOXA1.LNCaP_GSK 193 bp overlap

ChIP LNCaP_M253K GSE133386.FOXA1.LNCaP_M253K 158 bp overlap

ChIP LNCaP_SHFOXA1_R1881 GSE37345.FOXA1.LNCaP_SHFOXA1_R1881 108 bp overlap

ChIP MCF-7_ETOH GSE23852.FOXA1.MCF-7_ETOH 168 bp overlap

ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 165 bp overlap

ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 178 bp overlap

ChIP T-47D_shRNF2_24h GSE137579.FOXA1.T-47D_shRNF2_24h 198 bp overlap

FOXA2 4 datasets

ChIP DE DE-FOXA2-1 1031 bp overlap

ChIP DE DE-FOXA2-2 698 bp overlap

ChIP PANC-1 GSE119930.FOXA2.PANC-1 239 bp overlap

ChIP liver_CARN1618 ERP008682.FOXA2.liver_CARN1618 176 bp overlap

FOXK2 2 datasets

ChIP K-562 ENCSR302AWT.FOXK2.K-562 349 bp overlap

ChIP K562 ENCFF245WKP 417 bp overlap

GATA1 2 datasets

ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 66 bp overlap

ChIP CD34_Day7_30min GSE104676.GATA1.CD34_Day7_30min 57 bp overlap

GATA2 3 datasets

ChIP ESF GSE108408.GATA2.ESF 112 bp overlap

ChIP LNCaP_CSFCS GSE69043.GATA2.LNCaP_CSFCS 130 bp overlap

ChIP LNCaP_FBS GSE69043.GATA2.LNCaP_FBS 230 bp overlap

GATA3 4 datasets

ChIP Jurkat GSE76181.GATA3.Jurkat 197 bp overlap

ChIP Jurkat GSE120063.GATA3.Jurkat 214 bp overlap

ChIP MCF-7 ENCFF352QVM 306 bp overlap

ChIP MCF-7_E2 GSE60270.GATA3.MCF-7_E2 138 bp overlap

GATA3_Nter 2 datasets

ChIP T-47D_CR3flp GSE99479.GATA3_Nter.T-47D_CR3flp 162 bp overlap

ChIP T-47D_flp-ctrl GSE99479.GATA3_Nter.T-47D_flp-ctrl 208 bp overlap

GATA4 3 datasets

ChIP DE DE-GATA4-1 906 bp overlap

ChIP DE DE-GATA4-2 1031 bp overlap

ChIP foregut GSE117136.GATA4.foregut 285 bp overlap

GATA6 8 datasets

ChIP DE DE-GATA6-1 910 bp overlap

ChIP DE DE-GATA6-2 1031 bp overlap

ChIP DE_D1 S14-DE-d1-GATA6-exp1 618 bp overlap

ChIP DE_D2 S55-DE-d2-GATA6-exp2 893 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 547 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 731 bp overlap

ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 613 bp overlap

ChIP foregut GSE117136.GATA6.foregut 284 bp overlap

HDGF 3 datasets

ChIP K-562 ENCSR197ALX.HDGF.K-562 497 bp overlap

ChIP K-562 ENCSR563YDA.HDGF.K-562 335 bp overlap

ChIP K562 ENCFF682FBH 122 bp overlap

HMBOX1 1 dataset

ChIP K-562 ENCSR757IIU.HMBOX1.K-562 288 bp overlap

HOXA9 1 dataset

ChIP HEK293-FT GSE62586.HOXA9.HEK293-FT 325 bp overlap

IKZF1 4 datasets

ChIP GM12878 ENCFF753XDO 164 bp overlap

ChIP GM12878 ENCFF824TGK 379 bp overlap

ChIP GM12878 ENCFF824TGK 65 bp overlap

ChIP K562 ENCFF771OHZ 497 bp overlap

IKZF2 3 datasets

ChIP GM12878 ENCFF238LYK 452 bp overlap

ChIP GM12878 ENCFF238LYK 250 bp overlap

ChIP GM12878 ENCSR822AHX.IKZF2.GM12878 202 bp overlap

KLF1 2 datasets

ChIP HEK293 ENCFF159QSW 382 bp overlap

ChIP HEK293 ENCSR859BMR.KLF1.HEK293 217 bp overlap

ChIP PDAC GSE64557.KLF4.PDAC 339 bp overlap

ChIP PDAC GSE64557.KLF6.PDAC 121 bp overlap

ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 231 bp overlap

LARP7 1 dataset

ChIP K562 ENCFF550RPP 365 bp overlap

MLLT1 5 datasets

ChIP GM12878 ENCFF995GXC 505 bp overlap

ChIP GM12878 ENCSR552XSN.MLLT1.GM12878 480 bp overlap

ChIP K-562 ENCSR107GRP.MLLT1.K-562 221 bp overlap

ChIP K562 ENCFF074XRJ 405 bp overlap

ChIP K562 ENCFF871DSA 341 bp overlap

MYBL2 2 datasets

ChIP A-673 GSE119971.MYBL2.A-673 278 bp overlap

ChIP A-673 GSE119971.MYBL2.A-673 331 bp overlap

NANOG 3 datasets

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 101 bp overlap

ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 571 bp overlap

ChIP WA09 GSE105028.NANOG.WA09 217 bp overlap

ChIP GM12878 ENCSR278SQL.NBN.GM12878 263 bp overlap

ChIP K-562 ENCSR085QEV.NBN.K-562 310 bp overlap

ChIP MCF-7 ENCSR702BYX.NFIB.MCF-7 242 bp overlap

NR3C1 1 dataset

ChIP T47D-A1-2_Dex GSE112491.NR3C1.T47D-A1-2_Dex 396 bp overlap

RELB 2 datasets

ChIP GM12878 ENCFF217ADF 205 bp overlap

ChIP GM12878 ENCSR387QUV.RELB.GM12878 82 bp overlap

SKIL 2 datasets

ChIP GM12878 ENCFF171OVM 186 bp overlap

ChIP GM12878 ENCSR212YKD.SKIL.GM12878 306 bp overlap

SMAD2 6 datasets

ChIP endoderm GSE29422.SMAD2.endoderm 265 bp overlap

ChIP endoderm GSE29422.SMAD2.endoderm 198 bp overlap

ChIP hESC GSE29422.SMAD2.hESC 156 bp overlap

ChIP hESC GSE29422.SMAD2.hESC 116 bp overlap

ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 534 bp overlap

ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 429 bp overlap

SMAD2-3 4 datasets

ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 411 bp overlap

ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 1031 bp overlap

ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 770 bp overlap

ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 606 bp overlap

SMAD2_3 5 datasets

ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 626 bp overlap

ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 695 bp overlap

ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 521 bp overlap

ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 1031 bp overlap

ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 949 bp overlap

SMAD3 1 dataset

ChIP endoderm GSE29422.SMAD3.endoderm 273 bp overlap

SMAD4 1 dataset

ChIP endoderm GSE29422.SMAD4.endoderm 189 bp overlap

SMARCA4 7 datasets

ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-K785R 65 bp overlap

ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 218 bp overlap

ChIP CTV-1_DSG GSE128835.SMARCA4.CTV-1_DSG 201 bp overlap

ChIP CTV-1_FLAG GSE128835.SMARCA4.CTV-1_FLAG 139 bp overlap

ChIP K-562 ENCSR587OQL.SMARCA4.K-562 700 bp overlap

ChIP K-562 ENCSR643VTW.SMARCA4.K-562 237 bp overlap

ChIP K562 ENCFF506JCB 517 bp overlap

SMARCB1 1 dataset

ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 258 bp overlap

SNAI2 1 dataset

ChIP PC-9_2DF GSE131687.SNAI2.PC-9_2DF 278 bp overlap

ChIP HEK293 ENCFF733RBE 217 bp overlap

ChIP HEK293 ENCSR468IJT.SP7.HEK293 454 bp overlap

SPI1 2 datasets

ChIP CTV-1_FLAG_15perc GSE128835.SPI1.CTV-1_FLAG_15perc 75 bp overlap

ChIP CTV-1_delQ GSE128835.SPI1.CTV-1_delQ 98 bp overlap

SREBP2 2 datasets

ChIP monocyte GSE129202.SREBP2.monocyte 570 bp overlap

ChIP monocyte_TNF GSE129202.SREBP2.monocyte_TNF 1031 bp overlap

ChIP H1 ENCFF036PEF 160 bp overlap

ChIP K-562 ENCSR582IAO.SRF.K-562 130 bp overlap

ChIP K562 ENCFF766EOO 237 bp overlap

ChIP MCF-7 ENCFF508RYE 285 bp overlap

ChIP MCF-7 ENCSR000BVA.SRF.MCF-7 142 bp overlap

ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SS18.BIN-67_lentivirus-SMARCA4-T910M 77 bp overlap

STAT1 1 dataset

ChIP CD14_INFG_LPS GSE43036.STAT1.CD14_INFG_LPS 141 bp overlap

SUPT5H 2 datasets

ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 55 bp overlap

ChIP K562 ENCFF902PAW 605 bp overlap

TAL1 3 datasets

ChIP CD34 GSE52924.TAL1.CD34 113 bp overlap

ChIP K562 ENCFF620GMX 385 bp overlap

ChIP PRIMA2 GSE33850.TAL1.PRIMA2 66 bp overlap

TARDBP 1 dataset

ChIP GM12878 ENCSR412QBS.TARDBP.GM12878 474 bp overlap

TBX21 2 datasets

ChIP GM12878 ENCSR739IHN.TBX21.GM12878 114 bp overlap

ChIP GM12878 ENCSR739IHN.TBX21.GM12878 506 bp overlap

TFAP2C 1 dataset

ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 305 bp overlap

TRIM22 1 dataset

ChIP GM12878 ENCSR835XKS.TRIM22.GM12878 333 bp overlap

ZBTB33 2 datasets

ChIP K-562 ENCSR876GXA.ZBTB33.K-562 296 bp overlap

ChIP K562 ENCFF875HLX 426 bp overlap

ZEB2 2 datasets

ChIP K-562 ENCSR322CFO.ZEB2.K-562 303 bp overlap

ChIP K562 ENCFF795CMH 249 bp overlap

ZFP91 2 datasets

ChIP K562 ENCFF501CDP 465 bp overlap

ChIP K562 ENCFF501CDP 379 bp overlap

ZNF184 1 dataset

ChIP K-562 ENCSR546IHU.ZNF184.K-562 258 bp overlap

ZNF362 2 datasets

ChIP HEK293 ENCFF436CGE 491 bp overlap

ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 391 bp overlap

ZNF479 1 dataset

ChIP HEK293T GSE78099.ZNF479.HEK293T 176 bp overlap

ZNF573 1 dataset

ChIP HEK293T GSE78099.ZNF573.HEK293T 185 bp overlap

ZNF600 1 dataset

ChIP HEK293 ENCFF785JSX 162 bp overlap

ZNF629 2 datasets

ChIP HEK293 ENCFF096ELQ 525 bp overlap

ChIP HEK293 ENCSR351NON.ZNF629.HEK293 315 bp overlap

ZSCAN16 1 dataset

ChIP HEK293 GSE76494.ZSCAN16.HEK293 167 bp overlap

ZSCAN4 2 datasets

ChIP HEK293 ENCFF381BKT 451 bp overlap

ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 301 bp overlap