chr1 : 193,740,925 – 193,741,603
678 bp 88 TFs 0 linked genes
This 678 bp open chromatin element has no linked target genes and is bound by 88 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:193,735,925 – 193,746,603
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_Bag-1L_WT_DHT GSE89938.AR.LNCaP_Bag-1L_WT_DHT 149 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 256 bp overlap
ATF3 1 dataset
ChIP HCT-116_DMSO GSE74355.ATF3.HCT-116_DMSO 99 bp overlap
ATF4 1 dataset
Motif ES_0h ES_0h-ATF4_MA0833.3 10 bp overlap
BCL11A 2 datasets
ChIP WA01 ENCSR000BIP.BCL11A.WA01 187 bp overlap
ChIP WA01 ENCSR000BMJ.BCL11A.WA01 112 bp overlap
BCL6 1 dataset
Motif ES_0h ES_0h-BCL6_MA0463.3 13 bp overlap
BCL6B 1 dataset
Motif ES_0h ES_0h-BCL6B_MA0731.1 17 bp overlap
CHD7 2 datasets
ChIP H1 ENCFF126NLU 456 bp overlap
ChIP WA01 ENCSR000AVA.CHD7.WA01 223 bp overlap
CREB1 2 datasets
Motif ES_0h ES_0h-CREB1_MA0018.5 8 bp overlap
ChIP GM23338 ENCSR214ZAV.CREB1.GM23338 148 bp overlap
ELK1::HOXB13 2 datasets
Motif DE_60h DE_60h-ELK1HOXB13_MA1932.2 15 bp overlap
Motif ES_0h ES_0h-ELK1HOXB13_MA1932.2 15 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 273 bp overlap
EP300 2 datasets
ChIP WA01 ENCSR000BKK.EP300.WA01 167 bp overlap
ChIP hESC GSE17917.EP300.hESC 351 bp overlap
ERF::FOXI1 2 datasets
Motif DE_60h DE_60h-ERFFOXI1_MA1935.2 10 bp overlap
Motif ES_0h ES_0h-ERFFOXI1_MA1935.2 10 bp overlap
ERF::HOXB13 3 datasets
Motif DE_12h DE_12h-ERFHOXB13_MA1937.2 13 bp overlap
Motif DE_60h DE_60h-ERFHOXB13_MA1937.2 13 bp overlap
Motif ES_0h ES_0h-ERFHOXB13_MA1937.2 13 bp overlap
ETS1 1 dataset
ChIP cardiomyocyte_D2 GSE129986.ETS1.cardiomyocyte_D2 234 bp overlap
ETV1 2 datasets
Motif DE_60h DE_60h-ETV1_MA0761.3 9 bp overlap
Motif ES_0h ES_0h-ETV1_MA0761.3 9 bp overlap
ETV2::FOXI1 2 datasets
Motif DE_60h DE_60h-ETV2FOXI1_MA1942.2 11 bp overlap
Motif ES_0h ES_0h-ETV2FOXI1_MA1942.2 11 bp overlap
ETV5::DRGX 2 datasets
Motif DE_60h DE_60h-ETV5DRGX_MA1944.2 12 bp overlap
Motif ES_0h ES_0h-ETV5DRGX_MA1944.2 12 bp overlap
EWSR1-FLI1 2 datasets
Motif DE_60h DE_60h-EWSR1-FLI1_MA0149.1 18 bp overlap
Motif ES_0h ES_0h-EWSR1-FLI1_MA0149.1 18 bp overlap
FLI1::DRGX 2 datasets
Motif DE_60h DE_60h-FLI1DRGX_MA1949.2 14 bp overlap
Motif ES_0h ES_0h-FLI1DRGX_MA1949.2 14 bp overlap
FLI1::FOXI1 2 datasets
Motif DE_60h DE_60h-FLI1FOXI1_MA1950.2 11 bp overlap
Motif ES_0h ES_0h-FLI1FOXI1_MA1950.2 11 bp overlap
FOXA1 1 dataset
ChIP breast-cancer_ENOB-2849 GSE128018.FOXA1.breast-cancer_ENOB-2849 224 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 489 bp overlap
ChIP DE DE-FOXA2-2 471 bp overlap
FOXE1 2 datasets
Motif DE_60h DE_60h-FOXE1_MA1487.3 12 bp overlap
Motif ES_0h ES_0h-FOXE1_MA1487.3 12 bp overlap
FOXO1::ELK3 2 datasets
Motif DE_60h DE_60h-FOXO1ELK3_MA1955.2 13 bp overlap
Motif ES_0h ES_0h-FOXO1ELK3_MA1955.2 13 bp overlap
FOXP1 1 dataset
ChIP H9 GSE31006.FOXP1.H9 197 bp overlap
GATA4 6 datasets
ChIP DE DE-GATA4-1 429 bp overlap
ChIP DE DE-GATA4-2 406 bp overlap
Motif DE_60h DE_60h-GATA4_MA0482.3 8 bp overlap
Motif ES_0h ES_0h-GATA4_MA0482.3 8 bp overlap
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 229 bp overlap
ChIP foregut GSE117136.GATA4.foregut 279 bp overlap
GATA6 6 datasets
ChIP DE DE-GATA6-1 537 bp overlap
ChIP DE DE-GATA6-2 473 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 310 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 251 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 359 bp overlap
ChIP foregut GSE117136.GATA6.foregut 244 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000BNR.HDAC2.WA01 137 bp overlap
HOXD12::ELK1 1 dataset
Motif DE_12h DE_12h-HOXD12ELK1_MA1958.2 13 bp overlap
IKZF1 2 datasets
Motif DE_60h DE_60h-IKZF1_MA1508.2 8 bp overlap
Motif ES_0h ES_0h-IKZF1_MA1508.2 8 bp overlap
IKZF2 2 datasets
Motif DE_60h DE_60h-IKZF2_MA2326.1 6 bp overlap
Motif ES_0h ES_0h-IKZF2_MA2326.1 6 bp overlap
ISL2 1 dataset
Motif ES_0h ES_0h-ISL2_MA0914.2 6 bp overlap
Ikzf3 2 datasets
Motif DE_60h DE_60h-Ikzf3_MA1992.2 9 bp overlap
Motif ES_0h ES_0h-Ikzf3_MA1992.2 9 bp overlap
KDM1A 1 dataset
ChIP H1 ENCFF696SGD 473 bp overlap
KDM4A 1 dataset
ChIP hiPSC_IID12 GSE106870.KDM4A.hiPSC_IID12 225 bp overlap
MORC2 1 dataset
ChIP H9 GSE95374.MORC2.H9 285 bp overlap
MYB 2 datasets
Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap
Motif ES_0h ES_0h-MYB_MA0100.4 6 bp overlap
NANOG 11 datasets
ChIP GM23338 ENCFF065NZG 311 bp overlap
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 242 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 540 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 461 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 256 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 520 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 537 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 416 bp overlap
ChIP hESC GSE18292.NANOG.hESC 338 bp overlap
ChIP hESC GSE20650.NANOG.hESC 330 bp overlap
NIPBL 3 datasets
ChIP hESC GSE64758.NIPBL.hESC 260 bp overlap
ChIP hESC_WNT3A GSE64758.NIPBL.hESC_WNT3A 215 bp overlap
ChIP hESC_activin GSE64758.NIPBL.hESC_activin 225 bp overlap
ONECUT1 2 datasets
Motif DE_60h DE_60h-ONECUT1_MA0679.3 9 bp overlap
Motif ES_0h ES_0h-ONECUT1_MA0679.3 9 bp overlap
ONECUT3 2 datasets
Motif DE_60h DE_60h-ONECUT3_MA0757.2 12 bp overlap
Motif ES_0h ES_0h-ONECUT3_MA0757.2 12 bp overlap
OTX2 1 dataset
ChIP WTC11 ENCFF634NAO 245 bp overlap
POU2F1::SOX2 2 datasets
Motif DE_12h DE_12h-POU2F1SOX2_MA1962.1 17 bp overlap
Motif ES_0h ES_0h-POU2F1SOX2_MA1962.1 17 bp overlap
POU3F1 3 datasets
Motif DE_12h DE_12h-POU3F1_MA0786.2 10 bp overlap
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
Motif ES_0h ES_0h-POU3F1_MA0786.2 10 bp overlap
POU5F1 13 datasets
ChIP BJ_INDUCED GSE36570.POU5F1.BJ_INDUCED 260 bp overlap
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
Motif ES_0h ES_0h-POU5F1_MA1115.2 7 bp overlap
ChIP GM23338 ENCFF333SNB 311 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 487 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 411 bp overlap
ChIP WA09 GSE105028.POU5F1.WA09 289 bp overlap
ChIP WA09_heat-shock GSE105028.POU5F1.WA09_heat-shock 304 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 259 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 440 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 351 bp overlap
ChIP hiPSC_3s2 GSE81899.POU5F1.hiPSC_3s2 245 bp overlap
Pou5f1::Sox2 2 datasets
Motif DE_12h DE_12h-Pou5f1Sox2_MA0142.1 15 bp overlap
Motif ES_0h ES_0h-Pou5f1Sox2_MA0142.1 15 bp overlap
RAD21 1 dataset
ChIP GP5D GSE51234.RAD21.GP5D 299 bp overlap
RBPJ 2 datasets
Motif DE_60h DE_60h-RBPJ_MA1116.2 6 bp overlap
Motif ES_0h ES_0h-RBPJ_MA1116.2 6 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 385 bp overlap
SMAD3 2 datasets
ChIP BG03 GSE21614.SMAD3.BG03 142 bp overlap
ChIP BG03_DIFF_0H GSE36578.SMAD3.BG03_DIFF_0H 213 bp overlap
SMARCA4 3 datasets
ChIP WA09 GSE105028.SMARCA4.WA09 258 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 406 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 405 bp overlap
SMARCB1 2 datasets
ChIP hiPSC GSE124903.SMARCB1.hiPSC 434 bp overlap
ChIP hiPSC_WT GSE124903.SMARCB1.hiPSC_WT 378 bp overlap
SMARCC1 2 datasets
ChIP hiPSC GSE124903.SMARCC1.hiPSC 406 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 495 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 331 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 324 bp overlap
SOX18 2 datasets
Motif DE_60h DE_60h-SOX18_MA1563.2 8 bp overlap
Motif ES_0h ES_0h-SOX18_MA1563.2 8 bp overlap
SOX2 2 datasets
ChIP hESC GSE18292.SOX2.hESC 172 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 400 bp overlap
SOX8 2 datasets
Motif DE_60h DE_60h-SOX8_MA0868.3 7 bp overlap
Motif ES_0h ES_0h-SOX8_MA0868.3 7 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 210 bp overlap
SRY 2 datasets
Motif DE_60h DE_60h-SRY_MA0084.2 7 bp overlap
Motif ES_0h ES_0h-SRY_MA0084.2 7 bp overlap
STAT1 2 datasets
Motif DE_60h DE_60h-STAT1_MA0137.4 9 bp overlap
Motif ES_0h ES_0h-STAT1_MA0137.4 9 bp overlap
STAT3 2 datasets
Motif DE_60h DE_60h-STAT3_MA0144.3 9 bp overlap
Motif ES_0h ES_0h-STAT3_MA0144.3 9 bp overlap
Sox6 2 datasets
Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap
Motif ES_0h ES_0h-Sox6_MA0515.1 10 bp overlap
Sox7 2 datasets
Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap
Motif ES_0h ES_0h-Sox7_MA2095.1 10 bp overlap
Stat5b 2 datasets
Motif DE_60h DE_60h-Stat5b_MA1625.2 9 bp overlap
Motif ES_0h ES_0h-Stat5b_MA1625.2 9 bp overlap
T 1 dataset
ChIP H9_ENDODERM GSE60606.T.H9_ENDODERM 317 bp overlap
TBX20 2 datasets
Motif DE_12h DE_12h-TBX20_MA0689.1 11 bp overlap
Motif ES_0h ES_0h-TBX20_MA0689.1 11 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 162 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 240 bp overlap
TCF7L2 2 datasets
ChIP HEK293 ENCFF513JQN 505 bp overlap
ChIP HEK293 ENCFF513JQN 371 bp overlap
TP53 1 dataset
ChIP H9_ectoderm GSE142050.TP53.H9_ectoderm 239 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 132 bp overlap
ZBTB32 2 datasets
Motif DE_60h DE_60h-ZBTB32_MA1580.1 10 bp overlap
Motif ES_0h ES_0h-ZBTB32_MA1580.1 10 bp overlap
ZKSCAN1 2 datasets
Motif DE_60h DE_60h-ZKSCAN1_MA1585.2 9 bp overlap
Motif ES_0h ES_0h-ZKSCAN1_MA1585.2 9 bp overlap
ZNF143 1 dataset
ChIP WA01 ENCSR000EBW.ZNF143.WA01 151 bp overlap
ZNF175 2 datasets
Motif DE_60h DE_60h-ZNF175_MA2332.1 9 bp overlap
Motif ES_0h ES_0h-ZNF175_MA2332.1 9 bp overlap
ZNF207 1 dataset
ChIP WA09 GSE118632.ZNF207.WA09 378 bp overlap
ZNF324 2 datasets
Motif DE_60h DE_60h-ZNF324_MA1977.2 14 bp overlap
Motif ES_0h ES_0h-ZNF324_MA1977.2 14 bp overlap
ZNF423 1 dataset
ChIP WTC11 ENCFF574PBR 317 bp overlap
ZNF462 2 datasets
ChIP GM23338 ENCFF896CCA 251 bp overlap
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 309 bp overlap
ZNF532 1 dataset
ChIP NMC24335 GSE96775.ZNF532.NMC24335 556 bp overlap
ZNF582 2 datasets
Motif DE_12h DE_12h-ZNF582_MA1983.2 19 bp overlap
Motif ES_0h ES_0h-ZNF582_MA1983.2 19 bp overlap
ZNF652 2 datasets
Motif DE_60h DE_60h-ZNF652_MA1657.2 9 bp overlap
Motif ES_0h ES_0h-ZNF652_MA1657.2 9 bp overlap
Zfp809 2 datasets
Motif DE_60h DE_60h-Zfp809_MA2125.1 9 bp overlap
Motif ES_0h ES_0h-Zfp809_MA2125.1 9 bp overlap
Zic1::Zic2 2 datasets
Motif DE_60h DE_60h-Zic1Zic2_MA1628.2 7 bp overlap
Motif ES_0h ES_0h-Zic1Zic2_MA1628.2 7 bp overlap
Zic2 4 datasets
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Motif DE_60h DE_60h-Zic2_MA1629.2 9 bp overlap
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
Motif ES_0h ES_0h-Zic2_MA1629.2 9 bp overlap
Zic3 2 datasets
Motif DE_60h DE_60h-Zic3_MA0697.3 7 bp overlap
Motif ES_0h ES_0h-Zic3_MA0697.3 7 bp overlap
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