chr9 : 123,366,156 123,366,462
306 bp 78 TFs 1 linked gene
This 306 bp open chromatin element is linked to CRB2 and is bound by 78 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
CRB2 10.0 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:123,361,156 – 123,371,462
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
AR 7 datasets
ChIP 22Rv1_Crispr_WT3 GSE123618.AR.22Rv1_Crispr_WT3 233 bp overlap
ChIP 22Rv1_R1881 GSE80742.AR.22Rv1_R1881 292 bp overlap
ChIP 22Rv1_V5 GSE123618.AR.22Rv1_V5 210 bp overlap
ChIP 22Rv1_siARFL_R1881 GSE80742.AR.22Rv1_siARFL_R1881 218 bp overlap
ChIP LAPC-4_R1881 GSE148358.AR.LAPC-4_R1881 184 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 185 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 76 bp overlap
ARNT 1 dataset
ChIP MCF-7_aza GSE85352.ARNT.MCF-7_aza 306 bp overlap
BCOR 2 datasets
ChIP WA01 GSE104690.BCOR.WA01 239 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 306 bp overlap
BRD4 7 datasets
ChIP 22Rv1_DHT-DMSO GSE118247.BRD4.22Rv1_DHT-DMSO 207 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 245 bp overlap
ChIP MCF-10A ERP003925.BRD4.MCF-10A 219 bp overlap
ChIP hESC GSE33281.BRD4.hESC 61 bp overlap
ChIP hESC GSE33281.BRD4.hESC 104 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 153 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 306 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 109 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 76 bp overlap
CDK9 2 datasets
ChIP HCT-116 GSE72622.CDK9.HCT-116 111 bp overlap
ChIP HCT-116 GSE72622.CDK9.HCT-116 58 bp overlap
CHD2 1 dataset
ChIP WA01 ENCSR000EBT.CHD2.WA01 164 bp overlap
CREB1 2 datasets
ChIP H1 ENCFF955PMP 217 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 214 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 177 bp overlap
CTCF 37 datasets
ChIP 22Rv1 ENCFF466OXN 282 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 306 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 306 bp overlap
ChIP 786-O_NORMOXIA GSE78113.CTCF.786-O_NORMOXIA 232 bp overlap
ChIP GM04025_B-lymphocytes GSE111170.CTCF.GM04025_B-lymphocytes 153 bp overlap
ChIP GM09236__B-lymphocytes GSE111170.CTCF.GM09236__B-lymphocytes 134 bp overlap
ChIP GM09237_B-lymphocytes GSE111170.CTCF.GM09237_B-lymphocytes 144 bp overlap
ChIP GM12871 ENCSR000DRL.CTCF.GM12871 118 bp overlap
ChIP GM23338 ENCFF772DML 187 bp overlap
ChIP H1 ENCFF764RHO 225 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 264 bp overlap
ChIP HT-1080_CBL0137-6h GSE122462.CTCF.HT-1080_CBL0137-6h 223 bp overlap
ChIP HeLa-S3_shCtrl GSE137848.CTCF.HeLa-S3_shCtrl 233 bp overlap
ChIP Kelly_sensitive GSE103030.CTCF.Kelly_sensitive 95 bp overlap
ChIP MCF-7 ENCFF424NQR 191 bp overlap
ChIP MCF-7 ENCFF844STM 191 bp overlap
ChIP MCF-7L_t0 GSE108787.CTCF.MCF-7L_t0 133 bp overlap
ChIP MCF-7L_t1 GSE108787.CTCF.MCF-7L_t1 190 bp overlap
ChIP MCF-7L_t24 GSE108787.CTCF.MCF-7L_t24 272 bp overlap
ChIP T-47D_NaCl-isotonic GSE111923.CTCF.T-47D_NaCl-isotonic 217 bp overlap
ChIP T-47D_NaCl-isotonic-triptolide GSE111923.CTCF.T-47D_NaCl-isotonic-triptolide 271 bp overlap
ChIP T-47D_NaCl-triptolide GSE111923.CTCF.T-47D_NaCl-triptolide 273 bp overlap
ChIP T-47D_Y537S GSE148277.CTCF.T-47D_Y537S 274 bp overlap
ChIP T-47D_triptolide GSE111923.CTCF.T-47D_triptolide 306 bp overlap
ChIP WA01 ENCSR000DLK.CTCF.WA01 283 bp overlap
ChIP WA01 ENCSR000BNH.CTCF.WA01 151 bp overlap
ChIP WERI-Rb-1 ENCSR000DXW.CTCF.WERI-Rb-1 163 bp overlap
ChIP endodermal cell ENCFF471YCZ 229 bp overlap
ChIP hiPSC_HUES9 GSE106870.CTCF.hiPSC_HUES9 302 bp overlap
ChIP hiPSC_IB12 GSE106870.CTCF.hiPSC_IB12 243 bp overlap
ChIP hiPSC_IB7 GSE106870.CTCF.hiPSC_IB7 159 bp overlap
ChIP hiPSC_IID12 GSE106870.CTCF.hiPSC_IID12 190 bp overlap
ChIP hiPSC_IV8 GSE106870.CTCF.hiPSC_IV8 259 bp overlap
ChIP hiPSC_failed-genome-editing GSE106870.CTCF.hiPSC_failed-genome-editing 256 bp overlap
ChIP keratinocyte GSE154221.CTCF.keratinocyte 306 bp overlap
ChIP keratinocyte ENCSR000DWX.CTCF.keratinocyte 148 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 96 bp overlap
CTCFL 2 datasets
ChIP K-562 GSE70764.CTCFL.K-562 306 bp overlap
ChIP delta-47 GSE70764.CTCFL.delta-47 124 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 267 bp overlap
E2F6 2 datasets
ChIP H1 ENCFF785DWK 306 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 264 bp overlap
ERG 5 datasets
ChIP CD34_NR29 GSE23730.ERG.CD34_NR29 306 bp overlap
ChIP K-562 GSE23730.ERG.K-562 259 bp overlap
ChIP K-562_DOX GSE23730.ERG.K-562_DOX 264 bp overlap
ChIP MCF-7 GSE23730.ERG.MCF-7 153 bp overlap
ChIP VCaP_SH1_DHT GSE79128.ERG.VCaP_SH1_DHT 190 bp overlap
ESR1 6 datasets
ChIP Ishikawa GSE99905.ESR1.Ishikawa 232 bp overlap
ChIP MCF-7 GSE148277.ESR1.MCF-7 301 bp overlap
ChIP MCF-7_DHT GSE99626.ESR1.MCF-7_DHT 128 bp overlap
ChIP MCF-7_Y537S_DMSO GSE148277.ESR1.MCF-7_Y537S_DMSO 306 bp overlap
ChIP MCF-7_estradiol-DHT_45min GSE99626.ESR1.MCF-7_estradiol-DHT_45min 306 bp overlap
ChIP MCF-7_estradiol_45min_ChIP-and-reChIP GSE99626.ESR1.MCF-7_estradiol_45min_ChIP-and-reChIP 186 bp overlap
FLI1 2 datasets
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 157 bp overlap
ChIP UAE_ZINC GSE23730.FLI1.UAE_ZINC 241 bp overlap
GABPA 1 dataset
ChIP WA01 ENCSR000BIW.GABPA.WA01 268 bp overlap
HEXIM1 2 datasets
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 50 bp overlap
ChIP HCT-116 GSE72622.HEXIM1.HCT-116 179 bp overlap
HIF1A 1 dataset
ChIP BEAS-2B_arsenic GSE145834.HIF1A.BEAS-2B_arsenic 194 bp overlap
HMGB1 1 dataset
ChIP HUVEC-C GSE98245.HMGB1.HUVEC-C 55 bp overlap
HNF4G 2 datasets
ChIP 22Rv1 GSE85558.HNF4G.22Rv1 306 bp overlap
ChIP 22Rv1_Dox GSE85558.HNF4G.22Rv1_Dox 306 bp overlap
HNRNPL 4 datasets
ChIP K-562 ENCSR594BNR.HNRNPL.K-562 231 bp overlap
ChIP K-562 GSE120104.HNRNPL.K-562 197 bp overlap
ChIP K562 ENCFF296JLL 158 bp overlap
ChIP K562 ENCFF779NTZ 156 bp overlap
HOXA3 1 dataset
ChIP Hep-G2 ENCSR999JKC.HOXA3.Hep-G2 304 bp overlap
JARID2 1 dataset
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 295 bp overlap
JUND 1 dataset
ChIP WA01 ENCSR000BKP.JUND.WA01 116 bp overlap
KDM1A 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.KDM1A.pancreatic-progenitor_PP1 133 bp overlap
KDM5B 2 datasets
ChIP MCF-7 GSE46055.KDM5B.MCF-7 148 bp overlap
ChIP SUM185_SHCTCF GSE46055.KDM5B.SUM185_SHCTCF 261 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 161 bp overlap
ChIP P493-6_24HR GSE125863.MAX.P493-6_24HR 287 bp overlap
MBD2 1 dataset
ChIP HeLa GSE41006.MBD2.HeLa 181 bp overlap
MYC 1 dataset
ChIP P493-6_scramble-shRNA GSE101853.MYC.P493-6_scramble-shRNA 135 bp overlap
MYOCD 1 dataset
ChIP A-549 GSE128921.MYOCD.A-549 268 bp overlap
NANOG 2 datasets
ChIP WA01 ERP004238.NANOG.WA01 246 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 221 bp overlap
NCAPH2 1 dataset
ChIP HEK293 GSE97540.NCAPH2.HEK293 306 bp overlap
NR2F2 2 datasets
ChIP MCF-7_E2 GSE132432.NR2F2.MCF-7_E2 306 bp overlap
ChIP MCF-7_Veh GSE132432.NR2F2.MCF-7_Veh 306 bp overlap
NRL 1 dataset
ChIP retina_Hu13 GSE137311.NRL.retina_Hu13 242 bp overlap
PCGF1 1 dataset
ChIP WA01 GSE104690.PCGF1.WA01 250 bp overlap
POU2F1 2 datasets
ChIP T-47D GSE148277.POU2F1.T-47D 248 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 202 bp overlap
POU5F1 5 datasets
ChIP BJ1-hTERT GSE92491.POU5F1.BJ1-hTERT 160 bp overlap
ChIP DE_D1 DED1-OCT4_Batch_II 300 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 138 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 306 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 193 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 306 bp overlap
RAD21 1 dataset
ChIP hiPSC_IV8 GSE106870.RAD21.hiPSC_IV8 277 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 224 bp overlap
RELA 2 datasets
ChIP WTC11 ENCFF874IIP 108 bp overlap
ChIP WTC11 ENCFF874IIP 306 bp overlap
RNF2 3 datasets
ChIP H1 ENCFF239FFS 206 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 109 bp overlap
ChIP WA09 GSE105028.RNF2.WA09 306 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 306 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 306 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 94 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 248 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 66 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 128 bp overlap
SIX4 1 dataset
ChIP WTC11 ENCFF891HYW 306 bp overlap
SMARCA4 2 datasets
ChIP 22Rv1 GSE115615.SMARCA4.22Rv1 57 bp overlap
ChIP 22Rv1_PTEN-KO GSE115615.SMARCA4.22Rv1_PTEN-KO 303 bp overlap
SMC1 1 dataset
ChIP IMR-90_G GSE118494.SMC1.IMR-90_G 160 bp overlap
SNAI2 1 dataset
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 306 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 306 bp overlap
SPI1 1 dataset
ChIP primary-monocyte_donorA_ncMO GSE128834.SPI1.primary-monocyte_donorA_ncMO 84 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 306 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 306 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 306 bp overlap
TAL1 1 dataset
ChIP ME-1 GSE46044.TAL1.ME-1 269 bp overlap
TBP 1 dataset
ChIP hiPSC_WTb_RNase-neg GSE128135.TBP.hiPSC_WTb_RNase-neg 185 bp overlap
TCF12 2 datasets
ChIP H1 ENCFF203EBH 210 bp overlap
ChIP WA01 ENCSR000BIT.TCF12.WA01 168 bp overlap
TCF3 1 dataset
ChIP NPC GSE154479.TCF3.NPC 258 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 306 bp overlap
TFIIIC 1 dataset
ChIP HEK293 GSE119418.TFIIIC.HEK293 306 bp overlap
TP63 2 datasets
ChIP breast-organoid GSE113909.TP63.breast-organoid 96 bp overlap
ChIP keratinocyte_diff GSE33571.TP63.keratinocyte_diff 306 bp overlap
TRIM24 1 dataset
ChIP LNCaP-abl_ETOH GSE69331.TRIM24.LNCaP-abl_ETOH 242 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 306 bp overlap
TRIM28 2 datasets
ChIP HCT-116 GSE72622.TRIM28.HCT-116 183 bp overlap
ChIP hESC GSE115387.TRIM28.hESC 124 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 306 bp overlap
ZBTB33 3 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 216 bp overlap
ChIP K562 ENCFF427SDV 306 bp overlap
ChIP K562 ENCFF427SDV 211 bp overlap
ZEB1 2 datasets
ChIP GM12878 ENCSR000BND.ZEB1.GM12878 195 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR418KUS.ZEB1.neuron_bipolar_doxy_4d 121 bp overlap
ZFX 2 datasets
ChIP HEK293T_22Rv1 GSE145160.ZFX.HEK293T_22Rv1 306 bp overlap
ChIP HEK293T_FLAG GSE145160.ZFX.HEK293T_FLAG 306 bp overlap
ZFY 1 dataset
ChIP HEK293T_22Rv1 GSE145160.ZFY.HEK293T_22Rv1 306 bp overlap
ZNF605 1 dataset
ChIP HEK293T GSE78099.ZNF605.HEK293T 187 bp overlap
ZNF649 1 dataset
ChIP HEK293T GSE78099.ZNF649.HEK293T 180 bp overlap
ZNF711 1 dataset
ChIP HEK293T_22Rv1 GSE145160.ZNF711.HEK293T_22Rv1 306 bp overlap
ZNF736 1 dataset
ChIP HEK293T GSE78099.ZNF736.HEK293T 99 bp overlap