chr9 : 35,680,794 35,681,086
292 bp 67 TFs 2 linked genes
This 292 bp open chromatin element is linked to CA9 and TPM2 and is bound by 67 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
CA9 4.6 kb Proximal Proximity
TPM2 8.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr9:35,675,794 – 35,686,086
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
67 transcription factors
Source
Cell type
ARID2 2 datasets
ChIP Aska-SS_shSSX GSE108025.ARID2.Aska-SS_shSSX 100 bp overlap
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.ARID2.BIN-67_lentivirus-SMARCA4 289 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 166 bp overlap
BCL3 1 dataset
ChIP A-549 ENCSR000BQH.BCL3.A-549 256 bp overlap
BCL6 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCL6.B-cell_GERMINAL_CENTER 163 bp overlap
ChIP SU-DHL-4 GSE119038.BCL6.SU-DHL-4 292 bp overlap
BCOR 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 154 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 170 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 201 bp overlap
BRD4 1 dataset
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 171 bp overlap
CDK8 1 dataset
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 95 bp overlap
CREB1 2 datasets
ChIP A-549 ENCSR000BRB.CREB1.A-549 246 bp overlap
ChIP WA01 ENCSR000BSN.CREB1.WA01 181 bp overlap
CTCF 1 dataset
ChIP gastroesophageal-sphincter ENCSR298ZPF.CTCF.gastroesophageal-sphincter 182 bp overlap
DEK 1 dataset
ChIP HeLa-S3 ENCSR219MKK.DEK.HeLa-S3 142 bp overlap
DPF2 2 datasets
ChIP BIN-67 GSE117734.DPF2.BIN-67 292 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.DPF2.BIN-67_lentivirus-SMARCA4-K785R 89 bp overlap
E2F7 3 datasets
ChIP IMR-90 GSE40343.E2F7.IMR-90 242 bp overlap
ChIP IMR-90_QUIES GSE40343.E2F7.IMR-90_QUIES 127 bp overlap
ChIP IMR-90_SENES_SHCTR GSE40343.E2F7.IMR-90_SENES_SHCTR 241 bp overlap
EBF1 1 dataset
ChIP MUTUL GSE75503.EBF1.MUTUL 292 bp overlap
EP300 2 datasets
ChIP fibroblast_proliferating GSE106146.EP300.fibroblast_proliferating 168 bp overlap
ChIP fibroblast_senescent GSE106146.EP300.fibroblast_senescent 180 bp overlap
ESR1 1 dataset
ChIP MCF-7_PaPE-1_OA GSE93510.ESR1.MCF-7_PaPE-1_OA 186 bp overlap
FOS 1 dataset
ChIP MG-63-3 GSE74230.FOS.MG-63-3 167 bp overlap
FOXA1 14 datasets
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 292 bp overlap
ChIP A-549 ENCSR000BPX.FOXA1.A-549 257 bp overlap
ChIP A-549 ENCSR000BRD.FOXA1.A-549 211 bp overlap
ChIP MCF-7 ERP000380.FOXA1.MCF-7 151 bp overlap
ChIP MCF-7-TAMR-1_4OH-Tam GSE75201.FOXA1.MCF-7-TAMR-1_4OH-Tam 145 bp overlap
ChIP MCF-7_E2 GSE60270.FOXA1.MCF-7_E2 177 bp overlap
ChIP MCF-7_TNF GSE59530.FOXA1.MCF-7_TNF 136 bp overlap
ChIP MCF-7_estrogen_ab2 GSE112969.FOXA1.MCF-7_estrogen_ab2 292 bp overlap
ChIP MCF-7_vehicle_ab2 GSE112969.FOXA1.MCF-7_vehicle_ab2 292 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 234 bp overlap
ChIP T-47D_flp-ctrl GSE99479.FOXA1.T-47D_flp-ctrl 174 bp overlap
ChIP T-47D_shRNF2 GSE137579.FOXA1.T-47D_shRNF2 196 bp overlap
ChIP T-47D_shRNF2_45min GSE137579.FOXA1.T-47D_shRNF2_45min 211 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA1.pancreatic-progenitor_PP1 240 bp overlap
FOXA2 8 datasets
ChIP BJ1-hTERT_CDT1 GSE92491.FOXA2.BJ1-hTERT_CDT1 239 bp overlap
ChIP BJ1-hTERT_Mimo GSE92491.FOXA2.BJ1-hTERT_Mimo 218 bp overlap
ChIP BJ1-hTERT_MimoRelease GSE92491.FOXA2.BJ1-hTERT_MimoRelease 243 bp overlap
ChIP DE DE-FOXA2-1 292 bp overlap
ChIP DE DE-FOXA2-2 292 bp overlap
ChIP PANC-1 GSE119930.FOXA2.PANC-1 292 bp overlap
ChIP PANC-1_EV GSE119930.FOXA2.PANC-1_EV 292 bp overlap
ChIP pancreatic-progenitor_PP1 GSE104840.FOXA2.pancreatic-progenitor_PP1 271 bp overlap
FOXA3 1 dataset
ChIP K562 ENCFF348SOM 292 bp overlap
FOXP1 3 datasets
ChIP B-cell_CD77-pos GSE114803.FOXP1.B-cell_CD77-pos 118 bp overlap
ChIP H9 GSE31006.FOXP1.H9 150 bp overlap
ChIP SU-DHL-6 ERP010999.FOXP1.SU-DHL-6 292 bp overlap
GATA4 2 datasets
ChIP BJ1-hTERT GSE92491.GATA4.BJ1-hTERT 292 bp overlap
ChIP DE DE-GATA4-2 152 bp overlap
HDAC1 1 dataset
ChIP K-562_dilution-6-100 GSE140325.HDAC1.K-562_dilution-6-100 72 bp overlap
IFNA1 2 datasets
ChIP Huh-7_GFP GSE110511.IFNA1.Huh-7_GFP 292 bp overlap
ChIP Huh-7_NS5 GSE110511.IFNA1.Huh-7_NS5 292 bp overlap
ILF3 1 dataset
ChIP K-562 GSE103215.ILF3.K-562 129 bp overlap
JUN 2 datasets
ChIP A549 ENCFF846DUV 292 bp overlap
ChIP A549 ENCFF846DUV 128 bp overlap
JUND 1 dataset
ChIP A-549 ENCSR000BRF.JUND.A-549 271 bp overlap
KDM1A 1 dataset
ChIP NCI-H526_DMSO GSE66297.KDM1A.NCI-H526_DMSO 285 bp overlap
KLF4 1 dataset
ChIP BJ_INDUCED GSE36570.KLF4.BJ_INDUCED 162 bp overlap
MAX 3 datasets
ChIP P493-6 GSE36354.MAX.P493-6 275 bp overlap
ChIP P493-6 GSE42262.MAX.P493-6 171 bp overlap
ChIP P493-6_CMYC_1H GSE36354.MAX.P493-6_CMYC_1H 235 bp overlap
MAZ 3 datasets
ChIP IMR-90 ENCFF682IKN 211 bp overlap
ChIP IMR-90 ENCSR000EFF.MAZ.IMR-90 272 bp overlap
ChIP K-562 ENCSR000EFX.MAZ.K-562 122 bp overlap
MED1 2 datasets
ChIP HUVEC-C_siCTL GSE124892.MED1.HUVEC-C_siCTL 198 bp overlap
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 146 bp overlap
MED12 3 datasets
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 93 bp overlap
ChIP leiomyoma_PT916 GSE128230.MED12.leiomyoma_PT916 64 bp overlap
ChIP myometrium_PT886 GSE128230.MED12.myometrium_PT886 99 bp overlap
MYB 1 dataset
ChIP THP-1 GSE90769.MYB.THP-1 169 bp overlap
MYBL2 1 dataset
ChIP MCF-10A_DOX GSE115787.MYBL2.MCF-10A_DOX 244 bp overlap
NCAPH2 7 datasets
ChIP IMR-90_Bethyl275_G GSE118494.NCAPH2.IMR-90_Bethyl275_G 292 bp overlap
ChIP IMR-90_Bethyl275_OIS GSE118494.NCAPH2.IMR-90_Bethyl275_OIS 119 bp overlap
ChIP IMR-90_FLAG_G GSE118494.NCAPH2.IMR-90_FLAG_G 292 bp overlap
ChIP IMR-90_FLAG_OIS GSE118494.NCAPH2.IMR-90_FLAG_OIS 292 bp overlap
ChIP IMR-90_alpha-amanitin-1H GSE118494.NCAPH2.IMR-90_alpha-amanitin-1H 292 bp overlap
ChIP IMR-90_alpha-amanitin-30min GSE118494.NCAPH2.IMR-90_alpha-amanitin-30min 186 bp overlap
ChIP IMR-90_ctrl_OIS GSE118494.NCAPH2.IMR-90_ctrl_OIS 280 bp overlap
NELFE 1 dataset
ChIP HeLa_DOX GSE125534.NELFE.HeLa_DOX 53 bp overlap
NFATC1 1 dataset
ChIP HUVEC-C_VEGF GSE49428.NFATC1.HUVEC-C_VEGF 92 bp overlap
NR3C1 1 dataset
ChIP BEAS-2B_shNR3C1_TNF-DEX_IA1 GSE125623.NR3C1.BEAS-2B_shNR3C1_TNF-DEX_IA1 292 bp overlap
NRF1 2 datasets
ChIP K-562 ENCSR998AJK.NRF1.K-562 287 bp overlap
ChIP K562 ENCFF689EWI 292 bp overlap
PAF1 1 dataset
ChIP HCT-116_ab20662 GSE97527.PAF1.HCT-116_ab20662 292 bp overlap
PAX6 1 dataset
ChIP retina_pigment GSE60024.PAX6.retina_pigment 292 bp overlap
PBX3 1 dataset
ChIP A-549 ENCSR000BTN.PBX3.A-549 264 bp overlap
POLR2A 29 datasets
ChIP A549 ENCFF034EBG 104 bp overlap
ChIP GM12891 ENCFF012SUT 292 bp overlap
ChIP GM18951 ENCFF079KKO 292 bp overlap
ChIP H1 ENCFF566JSR 246 bp overlap
ChIP H1 ENCFF833NJP 224 bp overlap
ChIP HeLa-S3 ENCFF224LWS 292 bp overlap
ChIP HeLa-S3 ENCFF224LWS 292 bp overlap
ChIP HeLa-S3 ENCFF224LWS 175 bp overlap
ChIP HeLa-S3 ENCFF455YYQ 83 bp overlap
ChIP IMR-90 ENCFF672YWV 65 bp overlap
ChIP IMR-90 ENCFF672YWV 189 bp overlap
ChIP Panc1 ENCFF290KAB 292 bp overlap
ChIP Raji ENCFF613VGX 291 bp overlap
ChIP SK-N-MC ENCFF088IVG 263 bp overlap
ChIP SK-N-SH ENCFF683PFH 232 bp overlap
ChIP endothelial cell of umbilical vein ENCFF131DWO 201 bp overlap
ChIP esophagus muscularis mucosa ENCFF432ZCY 292 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 292 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 292 bp overlap
ChIP gastroesophageal sphincter ENCFF043KAM 163 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 292 bp overlap
ChIP gastroesophageal sphincter ENCFF826EZZ 292 bp overlap
ChIP sigmoid colon ENCFF725QFT 292 bp overlap
ChIP sigmoid colon ENCFF748YVT 292 bp overlap
ChIP spleen ENCFF044PYR 233 bp overlap
ChIP stomach ENCFF607ZPU 99 bp overlap
ChIP stomach ENCFF820WZN 292 bp overlap
ChIP transverse colon ENCFF607LKE 138 bp overlap
ChIP vagina ENCFF384GAB 53 bp overlap
POU2F1 4 datasets
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 267 bp overlap
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 292 bp overlap
ChIP T-47D GSE148277.POU2F1.T-47D 248 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 202 bp overlap
POU2F2 4 datasets
ChIP BJAB_BIRA GSE79480.POU2F2.BJAB_BIRA 138 bp overlap
ChIP GM12878 ENCFF207RKY 182 bp overlap
ChIP GM12891 ENCFF166YPP 254 bp overlap
ChIP GM12891 ENCSR000BII.POU2F2.GM12891 226 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 261 bp overlap
RB1 1 dataset
ChIP K-562 ENCSR670JDQ.RB1.K-562 158 bp overlap
RBM39 1 dataset
ChIP K-562 ENCSR764OXF.RBM39.K-562 161 bp overlap
RELA 13 datasets
ChIP GM12891 ENCSR000EAI.RELA.GM12891 182 bp overlap
ChIP GM19099 ENCSR000EBI.RELA.GM19099 204 bp overlap
ChIP HAEC_IL1b_4h GSE89970.RELA.HAEC_IL1b_4h 240 bp overlap
ChIP U2OS_10Gy_2h_recovery GSE109996.RELA.U2OS_10Gy_2h_recovery 269 bp overlap
ChIP aortic-endothelial-cell_IL1B_D11 GSE139377.RELA.aortic-endothelial-cell_IL1B_D11 161 bp overlap
ChIP aortic-endothelial-cell_IL1B_D13 GSE139377.RELA.aortic-endothelial-cell_IL1B_D13 230 bp overlap
ChIP aortic-endothelial-cell_IL1B_D16 GSE139377.RELA.aortic-endothelial-cell_IL1B_D16 240 bp overlap
ChIP aortic-endothelial-cell_IL1B_D2 GSE139377.RELA.aortic-endothelial-cell_IL1B_D2 221 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 248 bp overlap
ChIP aortic-endothelial-cell_IL1B_D27 GSE139377.RELA.aortic-endothelial-cell_IL1B_D27 161 bp overlap
ChIP aortic-endothelial-cell_IL1B_D47 GSE139377.RELA.aortic-endothelial-cell_IL1B_D47 163 bp overlap
ChIP aortic-endothelial-cell_IL1B_D8 GSE139377.RELA.aortic-endothelial-cell_IL1B_D8 177 bp overlap
ChIP aortic-endothelial-cell_IL1B_D9 GSE139377.RELA.aortic-endothelial-cell_IL1B_D9 236 bp overlap
RPA2_phospho 2 datasets
ChIP HeLa GSE108172.RPA2_phospho.HeLa 285 bp overlap
ChIP HeLa_shASF GSE108172.RPA2_phospho.HeLa_shASF 292 bp overlap
RUNX1 1 dataset
ChIP epididymis_HEE GSE109061.RUNX1.epididymis_HEE 147 bp overlap
SIN3A 4 datasets
ChIP A-549 ENCSR000BRM.SIN3A.A-549 175 bp overlap
ChIP H1 ENCFF042ZSL 238 bp overlap
ChIP H1 ENCFF042ZSL 292 bp overlap
ChIP H1 ENCFF896IJG 263 bp overlap
SMAD3 3 datasets
ChIP H69_4TGF GSE145250.SMAD3.H69_4TGF 292 bp overlap
ChIP SUM159PT GSE130364.SMAD3.SUM159PT 292 bp overlap
ChIP breast-cancer_triple-negative GSE130364.SMAD3.breast-cancer_triple-negative 173 bp overlap
SMARCA4 2 datasets
ChIP endometrial-epithelial-cells_KO GSE106660.SMARCA4.endometrial-epithelial-cells_KO 204 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 208 bp overlap
SMARCB1 1 dataset
ChIP proliferating-human-fibroblast_ASO_LINC GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_LINC 292 bp overlap
SMC3 3 datasets
ChIP HeLa GSE126990.SMC3.HeLa 206 bp overlap
ChIP HeLa-Kyoto GSE102884.SMC3.HeLa-Kyoto 206 bp overlap
ChIP HeLa-Kyoto GSE138405.SMC3.HeLa-Kyoto 206 bp overlap
SUPT5H 10 datasets
ChIP HCT-116_DMSO GSE138548.SUPT5H.HCT-116_DMSO 292 bp overlap
ChIP HCT-116_Nut3 GSE138548.SUPT5H.HCT-116_Nut3 282 bp overlap
ChIP HCT-116_Nut3_pThr806 GSE138548.SUPT5H.HCT-116_Nut3_pThr806 176 bp overlap
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 292 bp overlap
ChIP HeLa GSE125534.SUPT5H.HeLa 292 bp overlap
ChIP HeLa_DOX GSE125534.SUPT5H.HeLa_DOX 292 bp overlap
ChIP U2OS_DMSO GSE115365.SUPT5H.U2OS_DMSO 227 bp overlap
ChIP U2OS_siCtrl GSE115365.SUPT5H.U2OS_siCtrl 292 bp overlap
ChIP U2OS_siMYC GSE115365.SUPT5H.U2OS_siMYC 292 bp overlap
ChIP U2OS_siMYC_ON GSE115365.SUPT5H.U2OS_siMYC_ON 292 bp overlap
SUPT6H 1 dataset
ChIP HCT-116_Inhibitor GSE130509.SUPT6H.HCT-116_Inhibitor 292 bp overlap
TBP 4 datasets
ChIP WA01 ENCSR000ECB.TBP.WA01 157 bp overlap
ChIP hESC_10h GSE122298.TBP.hESC_10h 147 bp overlap
ChIP hESC_2h GSE122298.TBP.hESC_2h 97 bp overlap
ChIP hESC_8h GSE122298.TBP.hESC_8h 159 bp overlap
TCF12 1 dataset
ChIP A-549 ENCSR000BQQ.TCF12.A-549 170 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 205 bp overlap
TFAP2C 1 dataset
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 215 bp overlap