chr7 : 54,543,073 54,543,485
412 bp 65 TFs 1 linked gene
This 412 bp open chromatin element is linked to VSTM2A and is bound by 65 transcription factors.
Linked Genes
1 gene
Gene Expression Dist. to TSS Distance Link type
VSTM2A 749 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr7:54,538,073 – 54,548,485
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
65 transcription factors
Source
Cell type
AR 6 datasets
ChIP A-375_SLNCR GSE116189.AR.A-375_SLNCR 302 bp overlap
ChIP LNCaP ERP003503.AR.LNCaP 85 bp overlap
ChIP LNCaP GSE63202.AR.LNCaP 157 bp overlap
ChIP LNCaP ERP001226.AR.LNCaP 139 bp overlap
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 228 bp overlap
ChIP LNCaP_FOXA1 ERP003503.AR.LNCaP_FOXA1 192 bp overlap
ARID2 1 dataset
ChIP BIN-67_lentivirus-SMARCA4-K785R GSE117734.ARID2.BIN-67_lentivirus-SMARCA4-K785R 342 bp overlap
ASH2L 2 datasets
ChIP VCaP GSE60841.ASH2L.VCaP 291 bp overlap
ChIP VCaP_R1881 GSE60841.ASH2L.VCaP_R1881 167 bp overlap
BAF155 2 datasets
ChIP VCaP_shARID1A GSE110655.BAF155.VCaP_shARID1A 300 bp overlap
ChIP VCaP_shERG GSE110655.BAF155.VCaP_shERG 194 bp overlap
BCOR 3 datasets
ChIP WA01 GSE104690.BCOR.WA01 279 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 328 bp overlap
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 313 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 257 bp overlap
BRD4 9 datasets
ChIP BE2C GSE80151.BRD4.BE2C 406 bp overlap
ChIP IMR-90_QUIES GSE74238.BRD4.IMR-90_QUIES 160 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 178 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 402 bp overlap
ChIP NCI-H1963_shNONT GSE145028.BRD4.NCI-H1963_shNONT 84 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 406 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_KCl-pos_JQ1-neg 412 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 188 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 118 bp overlap
CBX1 1 dataset
ChIP Hep-G2 ENCSR819WZE.CBX1.Hep-G2 145 bp overlap
CREB5 1 dataset
ChIP LNCaP GSE137775.CREB5.LNCaP 175 bp overlap
CREBBP 1 dataset
ChIP MCF-7 ERP000901.CREBBP.MCF-7 143 bp overlap
CTBP2 1 dataset
ChIP MCF-7 GSE107013.CTBP2.MCF-7 141 bp overlap
ERF 1 dataset
ChIP VCaP GSE98809.ERF.VCaP 180 bp overlap
ERG 3 datasets
ChIP VCaP GSE49091.ERG.VCaP 163 bp overlap
ChIP VCaP_ETOH GSE49091.ERG.VCaP_ETOH 151 bp overlap
ChIP VCaP_R1881 GSE49091.ERG.VCaP_R1881 246 bp overlap
EZH2 10 datasets
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 78 bp overlap
ChIP GM23248 ENCSR131FFJ.EZH2.GM23248 265 bp overlap
ChIP GM23338 ENCSR045YHA.EZH2.GM23338 238 bp overlap
ChIP LNCaP-abl GSE39459.EZH2.LNCaP-abl 233 bp overlap
ChIP T-REx-293_K27WT_6h GSE118954.EZH2.T-REx-293_K27WT_6h 274 bp overlap
ChIP VCaP_DHAT_2H GSE28950.EZH2.VCaP_DHAT_2H 194 bp overlap
ChIP VCaP_ETOH GSE28950.EZH2.VCaP_ETOH 184 bp overlap
ChIP WA01 ENCSR000ASY.EZH2.WA01 160 bp overlap
ChIP epithelial_mammary ENCSR000ARE.EZH2.epithelial_mammary 364 bp overlap
ChIP mammary epithelial cell ENCFF224GAI 294 bp overlap
FOXA1 5 datasets
ChIP 22Rv1 GSE96652.FOXA1.22Rv1 225 bp overlap
ChIP 22Rv1_CST GSE129951.FOXA1.22Rv1_CST 336 bp overlap
ChIP 22Rv1_Dox GSE85558.FOXA1.22Rv1_Dox 178 bp overlap
ChIP 22Rv1_R1881 GSE80742.FOXA1.22Rv1_R1881 201 bp overlap
ChIP T-47D_CR3flp GSE99479.FOXA1.T-47D_CR3flp 173 bp overlap
GABPA 2 datasets
ChIP VCaP GSE49091.GABPA.VCaP 265 bp overlap
ChIP VCaP_ETOH GSE49091.GABPA.VCaP_ETOH 280 bp overlap
GATA4 1 dataset
ChIP pancreatic-progenitor_PP1 GSE104840.GATA4.pancreatic-progenitor_PP1 73 bp overlap
GATA6 3 datasets
ChIP DE DE-GATA6-2 74 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 152 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 143 bp overlap
GRHL2 7 datasets
ChIP LNCaP GSE80256.GRHL2.LNCaP 218 bp overlap
ChIP MCF-7 GSE109820.GRHL2.MCF-7 207 bp overlap
ChIP MCF-7-WS8_VEH GSE113092.GRHL2.MCF-7-WS8_VEH 261 bp overlap
ChIP MCF-7_E2_45min GSE109820.GRHL2.MCF-7_E2_45min 281 bp overlap
ChIP OVCA429 GSE71018.GRHL2.OVCA429 165 bp overlap
ChIP PEO1 GSE71018.GRHL2.PEO1 127 bp overlap
ChIP T-47D GSE99680.GRHL2.T-47D 293 bp overlap
HDAC1 1 dataset
ChIP MCF-7_parental_4-hydroxytamoxifen GSE123284.HDAC1.MCF-7_parental_4-hydroxytamoxifen 172 bp overlap
HDAC2 4 datasets
ChIP MCF-7 ENCFF881POI 296 bp overlap
ChIP MCF-7 ENCSR000BTP.HDAC2.MCF-7 203 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 242 bp overlap
ChIP WA01 ENCSR000AVB.HDAC2.WA01 199 bp overlap
HIF1A 1 dataset
ChIP PC-3_hypoxia_siCtrl GSE106305.HIF1A.PC-3_hypoxia_siCtrl 193 bp overlap
HIF3A 1 dataset
ChIP Hep-3B2-1-7 GSE129491.HIF3A.Hep-3B2-1-7 362 bp overlap
HOXB13 2 datasets
ChIP LNCaP_Veh GSE148928.HOXB13.LNCaP_Veh 211 bp overlap
ChIP prostate-cancer_PDX_170-2 GSE130408.HOXB13.prostate-cancer_PDX_170-2 154 bp overlap
JARID2 2 datasets
ChIP MRC-5_IPS25_CTR GSE48515.JARID2.MRC-5_IPS25_CTR 223 bp overlap
ChIP UTEIPS7 GSE48516.JARID2.UTEIPS7 303 bp overlap
JUN 1 dataset
ChIP MCF-7_abemaciclib GSE157385.JUN.MCF-7_abemaciclib 274 bp overlap
MAX 2 datasets
ChIP MCF-7 ENCFF169IXS 336 bp overlap
ChIP MCF-7 ENCSR000BUL.MAX.MCF-7 171 bp overlap
MIER2 1 dataset
ChIP HepG2 ENCFF997QIX 117 bp overlap
MXI1 1 dataset
ChIP neural ENCSR934NHU.MXI1.neural 220 bp overlap
MYCN 3 datasets
ChIP COG-N-415 GSE138295.MYCN.COG-N-415 412 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 335 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 412 bp overlap
MYOD1 1 dataset
ChIP RH4 GSE83726.MYOD1.RH4 169 bp overlap
NFIC 1 dataset
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 146 bp overlap
NR3C1 1 dataset
ChIP A-549 ENCSR000BHF.NR3C1.A-549 168 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 378 bp overlap
POU2F1 2 datasets
ChIP 22Rv1_DHT GSE123565.POU2F1.22Rv1_DHT 284 bp overlap
ChIP 22Rv1_Veh GSE123565.POU2F1.22Rv1_Veh 277 bp overlap
POU2F3 1 dataset
ChIP NCI-H1048 GSE115123.POU2F3.NCI-H1048 114 bp overlap
POU5F1 2 datasets
ChIP HUES-8 GSE109524.POU5F1.HUES-8 384 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 225 bp overlap
RAD21 6 datasets
ChIP H1 ENCFF698EWO 221 bp overlap
ChIP MCF-7 ERP000209.RAD21.MCF-7 124 bp overlap
ChIP MCF-7_E2 ERP000209.RAD21.MCF-7_E2 138 bp overlap
ChIP MCF-7_E2_SHCTCF ERP000209.RAD21.MCF-7_E2_SHCTCF 172 bp overlap
ChIP RH4 GSE83726.RAD21.RH4 314 bp overlap
ChIP neural cell ENCFF564MOT 367 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 120 bp overlap
REST 55 datasets
ChIP A-549 ENCSR892DRK.REST.A-549 412 bp overlap
ChIP A-549 ENCSR000BQP.REST.A-549 379 bp overlap
ChIP A549 ENCFF148AIS 372 bp overlap
ChIP GM12878 ENCFF235NGC 219 bp overlap
ChIP GM12878 ENCSR000BQS.REST.GM12878 180 bp overlap
ChIP GM12878 ENCSR000BGF.REST.GM12878 124 bp overlap
ChIP GM23338 ENCFF024TCL 170 bp overlap
ChIP GM23338 ENCSR871KYB.REST.GM23338 412 bp overlap
ChIP GP5D GSE51234.REST.GP5D 397 bp overlap
ChIP GP5D_SIRAD21 GSE51234.REST.GP5D_SIRAD21 412 bp overlap
ChIP H1 ENCFF203SWY 252 bp overlap
ChIP H1 ENCFF203SWY 170 bp overlap
ChIP H1 ENCFF429RUE 242 bp overlap
ChIP HCT-116 ENCSR000BVI.REST.HCT-116 116 bp overlap
ChIP HEK293 ENCFF073DOT 341 bp overlap
ChIP HEK293 ENCFF073DOT 141 bp overlap
ChIP HEK293 ENCSR896UBV.REST.HEK293 322 bp overlap
ChIP HL-60 ENCFF589LOF 194 bp overlap
ChIP HL-60 ENCSR000BTF.REST.HL-60 289 bp overlap
ChIP HeLa-S3 ENCFF911DTC 202 bp overlap
ChIP HeLa-S3 ENCSR000BMN.REST.HeLa-S3 243 bp overlap
ChIP Hep-G2 ENCSR000BOT.REST.Hep-G2 253 bp overlap
ChIP Hep-G2 ENCSR000BJL.REST.Hep-G2 197 bp overlap
ChIP HepG2 ENCFF122AWR 140 bp overlap
ChIP HepG2 ENCFF800JSL 234 bp overlap
ChIP Ishikawa ENCFF456OHV 270 bp overlap
ChIP Ishikawa ENCSR000BUU.REST.Ishikawa 412 bp overlap
ChIP K-562 ENCSR000ATM.REST.K-562 368 bp overlap
ChIP K-562 ENCSR000BMW.REST.K-562 164 bp overlap
ChIP MCF-7 ENCFF893RRD 277 bp overlap
ChIP MCF-7 ENCSR000BSP.REST.MCF-7 412 bp overlap
ChIP NCI-H295R GSE49014.REST.NCI-H295R 221 bp overlap
ChIP NCI-H295R_SF1 GSE49014.REST.NCI-H295R_SF1 234 bp overlap
ChIP PANC-1 ENCSR000BJO.REST.PANC-1 372 bp overlap
ChIP PANC-1 ENCSR000BUP.REST.PANC-1 320 bp overlap
ChIP PANC-1 ENCSR000BPK.REST.PANC-1 282 bp overlap
ChIP PFSK-1 ENCFF668WMP 255 bp overlap
ChIP PFSK-1 ENCFF845VHA 228 bp overlap
ChIP PFSK1 ENCSR000BOX.REST.PFSK1 412 bp overlap
ChIP PFSK1 ENCSR000BJP.REST.PFSK1 210 bp overlap
ChIP Panc1 ENCFF518EEQ 355 bp overlap
ChIP Panc1 ENCFF629OJO 250 bp overlap
ChIP SK-N-SH ENCFF635KBN 225 bp overlap
ChIP SK-N-SH ENCFF861MKH 164 bp overlap
ChIP SK-N-SH ENCSR000BJJ.REST.SK-N-SH 322 bp overlap
ChIP WA01 ENCSR663WAR.REST.WA01 412 bp overlap
ChIP WA01 ENCSR000BHM.REST.WA01 412 bp overlap
ChIP colorectal-cancer_CRC121_intact GSE112555.REST.colorectal-cancer_CRC121_intact 247 bp overlap
ChIP colorectal-cancer_shCDH1 GSE112555.REST.colorectal-cancer_shCDH1 346 bp overlap
ChIP colorectal-cancer_shCTRL_dissociated GSE112555.REST.colorectal-cancer_shCTRL_dissociated 238 bp overlap
ChIP hiPSC_IA12 GSE106870.REST.hiPSC_IA12 185 bp overlap
ChIP hiPSC_IB12 GSE106870.REST.hiPSC_IB12 196 bp overlap
ChIP hiPSC_IID12 GSE106870.REST.hiPSC_IID12 231 bp overlap
ChIP neural ENCSR000BTV.REST.neural 160 bp overlap
ChIP neural cell ENCFF882LXX 366 bp overlap
RNF2 3 datasets
ChIP HUES-64 GSE104059.RNF2.HUES-64 212 bp overlap
ChIP WA01 GSE104690.RNF2.WA01 412 bp overlap
ChIP WA01 ENCSR784VUY.RNF2.WA01 141 bp overlap
RUNX1 1 dataset
ChIP VCaP_DHT24H GSE58428.RUNX1.VCaP_DHT24H 77 bp overlap
RYBP 1 dataset
ChIP WA01 GSE104690.RYBP.WA01 264 bp overlap
SAP30 1 dataset
ChIP WA01 ENCSR000ATR.SAP30.WA01 288 bp overlap
SIN3A 5 datasets
ChIP H1 ENCFF042ZSL 369 bp overlap
ChIP H1 ENCFF896IJG 262 bp overlap
ChIP MCF-7 ENCSR000BUM.SIN3A.MCF-7 165 bp overlap
ChIP WA01 ENCSR000BIS.SIN3A.WA01 190 bp overlap
ChIP WA01 ENCSR000EBO.SIN3A.WA01 182 bp overlap
SMARCA4 9 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 197 bp overlap
ChIP BIN-67_lentivirus-SMARCA4-T910M GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4-T910M 304 bp overlap
ChIP NGP GSE134626.SMARCA4.NGP 206 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 209 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 171 bp overlap
ChIP TTC-1240 GSE124903.SMARCA4.TTC-1240 200 bp overlap
ChIP TTC-1240_R377H GSE124903.SMARCA4.TTC-1240_R377H 147 bp overlap
ChIP hiPSC GSE124903.SMARCA4.hiPSC 242 bp overlap
ChIP hiPSC_WT GSE124903.SMARCA4.hiPSC_WT 263 bp overlap
SMARCB1 2 datasets
ChIP MCF-7_Fulvestrant GSE123284.SMARCB1.MCF-7_Fulvestrant 172 bp overlap
ChIP hiPSC GSE124903.SMARCB1.hiPSC 221 bp overlap
SMARCC1 3 datasets
ChIP DE_D1 S15-DE-d1-BAF155-exp1 248 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 204 bp overlap
ChIP hiPSC_WT GSE124903.SMARCC1.hiPSC_WT 226 bp overlap
SMC3 1 dataset
ChIP neural cell ENCFF795YGY 243 bp overlap
SNAI2 1 dataset
ChIP SMS-CTR_shSNAI2 GSE137168.SNAI2.SMS-CTR_shSNAI2 222 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 190 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 383 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 311 bp overlap
ChIP hiPSC GSE56567.SOX2.hiPSC 196 bp overlap
STAG1 3 datasets
ChIP MCF-7 ERP000209.STAG1.MCF-7 169 bp overlap
ChIP MCF-7_E2 ERP000209.STAG1.MCF-7_E2 187 bp overlap
ChIP MCF-7_E2_SHCTCF ERP000209.STAG1.MCF-7_E2_SHCTCF 138 bp overlap
SUZ12 4 datasets
ChIP CRL-7250_shSS18-SSX GSE108025.SUZ12.CRL-7250_shSS18-SSX 165 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 152 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 90 bp overlap
ChIP hiPSC GSE124903.SUZ12.hiPSC 246 bp overlap
TEAD4 3 datasets
ChIP A-549 ENCSR000BUD.TEAD4.A-549 347 bp overlap
ChIP A549 ENCFF243FTL 147 bp overlap
ChIP MCF-7_BLRP_WT_Veh GSE125594.TEAD4.MCF-7_BLRP_WT_Veh 187 bp overlap
VDR 1 dataset
ChIP LNCaP GSE64656.VDR.LNCaP 192 bp overlap
YY1 1 dataset
ChIP NT2-D1 ENCSR000EXG.YY1.NT2-D1 97 bp overlap
ZNF24 1 dataset
ChIP MCF-7 ENCSR503VTG.ZNF24.MCF-7 278 bp overlap
ZNF335 1 dataset
ChIP HEK293 ENCFF784SLD 285 bp overlap