chr1 : 149,103,464 – 149,103,617
153 bp 78 TFs 1 linked gene
This 153 bp open chromatin element is linked to NBPF9 and is bound by 78 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
NBPF9 at TSS At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:149,098,464 – 149,108,617
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
78 transcription factors
Source
Cell type
ARID4A 1 dataset
ChIP HepG2 ENCFF142DIE 153 bp overlap
ATF7 1 dataset
ChIP K562 ENCFF308SKS 153 bp overlap
BHLHE22 1 dataset
Motif DE_24h DE_24h-BHLHE22_MA1635.2 6 bp overlap
CREB1 1 dataset
ChIP MCF-7 ENCFF341ZEM 153 bp overlap
CTBP1 3 datasets
ChIP K562 ENCFF403WPG 60 bp overlap
ChIP K562 ENCFF403WPG 153 bp overlap
ChIP MCF-7 ENCFF969VBY 147 bp overlap
CTCF 19 datasets
ChIP HepG2 ENCFF757EKU 153 bp overlap
ChIP RWPE1 ENCFF200GQF 153 bp overlap
ChIP RWPE2 ENCFF911IEE 153 bp overlap
ChIP ascending aorta ENCFF451CCT 82 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF338KEP 153 bp overlap
ChIP dorsolateral prefrontal cortex ENCFF483ZLP 153 bp overlap
ChIP esophagus muscularis mucosa ENCFF544GAS 153 bp overlap
ChIP esophagus squamous epithelium ENCFF571ODZ 153 bp overlap
ChIP foreskin keratinocyte ENCFF980OWR 153 bp overlap
ChIP gastroesophageal sphincter ENCFF125ESZ 153 bp overlap
ChIP gastroesophageal sphincter ENCFF607YRA 99 bp overlap
ChIP heart left ventricle ENCFF987PUT 153 bp overlap
ChIP neural cell ENCFF335ADI 153 bp overlap
ChIP right atrium auricular region ENCFF696NTN 153 bp overlap
ChIP stomach ENCFF370OWL 153 bp overlap
ChIP thoracic aorta ENCFF012WJQ 153 bp overlap
ChIP tibial nerve ENCFF665IWH 153 bp overlap
ChIP upper lobe of left lung ENCFF962AIJ 153 bp overlap
ChIP uterus ENCFF631BWF 153 bp overlap
CTCFL 1 dataset
ChIP K-562 GSE70764.CTCFL.K-562 79 bp overlap
CXXC5 1 dataset
ChIP K562 ENCFF497CZN 153 bp overlap
DACH1 1 dataset
ChIP K562 ENCFF574LOW 153 bp overlap
E2F1 3 datasets
ChIP MCF-7 ENCFF692OYJ 153 bp overlap
ChIP MCF-7 ENCFF692OYJ 153 bp overlap
ChIP MCF-7 ENCSR000EWX.E2F1.MCF-7 153 bp overlap
E2F3 1 dataset
ChIP K562 ENCFF922ILX 153 bp overlap
E2F6 1 dataset
ChIP K-562 ENCSR000EWJ.E2F6.K-562 98 bp overlap
EP300 1 dataset
ChIP tibial nerve ENCFF346AYA 153 bp overlap
ERF::FIGLA 1 dataset
Motif DE_24h DE_24h-ERFFIGLA_MA1934.2 13 bp overlap
ERG 1 dataset
ChIP ME-1 GSE46044.ERG.ME-1 153 bp overlap
ETV2::FIGLA 1 dataset
Motif DE_24h DE_24h-ETV2FIGLA_MA1941.2 13 bp overlap
ETV5::FIGLA 1 dataset
Motif DE_24h DE_24h-ETV5FIGLA_MA1945.2 14 bp overlap
GTF2F1 1 dataset
ChIP MCF-7 ENCFF576OTX 153 bp overlap
HCFC1 1 dataset
ChIP MCF-7 ENCFF595ZTV 153 bp overlap
HDAC1 2 datasets
ChIP K562 ENCFF928TKZ 153 bp overlap
ChIP K562 ENCFF968WBH 153 bp overlap
KLF9 1 dataset
ChIP MCF-7 ENCFF618FCM 125 bp overlap
L3MBTL2 1 dataset
ChIP K562 ENCFF320EQC 153 bp overlap
LIN54 2 datasets
ChIP HepG2 ENCFF662XDE 153 bp overlap
ChIP HepG2 ENCFF662XDE 153 bp overlap
MAX 1 dataset
ChIP MCF-7 ENCFF169IXS 153 bp overlap
MAZ 1 dataset
ChIP K562 ENCFF982GSZ 153 bp overlap
MEIS2 1 dataset
ChIP K562 ENCFF320GSD 153 bp overlap
MGA 1 dataset
ChIP K562 ENCFF140CEX 153 bp overlap
MNT 2 datasets
ChIP K562 ENCFF450LDL 153 bp overlap
ChIP MCF-7 ENCFF144ZFZ 153 bp overlap
MTA1 1 dataset
ChIP MCF-7 ENCFF365KTT 153 bp overlap
MTA3 1 dataset
ChIP K562 ENCFF289UFB 153 bp overlap
MYC 2 datasets
ChIP MCF-7 ENCFF394LGD 137 bp overlap
ChIP MCF-7 ENCFF542NWJ 153 bp overlap
NFIC 1 dataset
ChIP K562 ENCFF167YID 153 bp overlap
NRF1 11 datasets
ChIP HCC1954 GSE67867.NRF1.HCC1954 75 bp overlap
ChIP HepG2 ENCFF694NVY 153 bp overlap
ChIP HepG2 ENCFF942ICJ 153 bp overlap
ChIP HepG2 ENCFF942ICJ 96 bp overlap
ChIP K-562_Ab_R157-1-3D4 GSE97661.NRF1.K-562_Ab_R157-1-3D4 61 bp overlap
ChIP K562 ENCFF130SGK 153 bp overlap
ChIP K562 ENCFF130SGK 82 bp overlap
ChIP K562 ENCFF689EWI 153 bp overlap
ChIP K562 ENCFF791UHF 153 bp overlap
ChIP MCF-7 ENCFF148IMD 153 bp overlap
ChIP MCF-7_Ab_R157-1-3D4 GSE97661.NRF1.MCF-7_Ab_R157-1-3D4 83 bp overlap
Neurod2 1 dataset
Motif DE_24h DE_24h-Neurod2_MA1993.2 6 bp overlap
OVOL1 1 dataset
ChIP MCF-7 ENCFF537GWI 153 bp overlap
Olig2 1 dataset
Motif DE_24h DE_24h-Olig2_MA1997.2 6 bp overlap
PHF8 2 datasets
ChIP HepG2 ENCFF065NWR 153 bp overlap
ChIP K562 ENCFF217UCA 89 bp overlap
POLR2A 45 datasets
ChIP H54 ENCFF398BXN 141 bp overlap
ChIP K562 ENCFF215CWW 153 bp overlap
ChIP MCF-7 ENCFF164XWP 153 bp overlap
ChIP Peyer's patch ENCFF990IYL 153 bp overlap
ChIP Raji ENCFF613VGX 129 bp overlap
ChIP adrenal gland ENCFF843OBJ 153 bp overlap
ChIP body of pancreas ENCFF501FEC 153 bp overlap
ChIP body of pancreas ENCFF675RCN 153 bp overlap
ChIP body of pancreas ENCFF727UBE 153 bp overlap
ChIP breast epithelium ENCFF045XXN 153 bp overlap
ChIP esophagus muscularis mucosa ENCFF432ZCY 153 bp overlap
ChIP esophagus muscularis mucosa ENCFF759BBR 153 bp overlap
ChIP esophagus muscularis mucosa ENCFF791ZXN 153 bp overlap
ChIP esophagus squamous epithelium ENCFF297FPP 153 bp overlap
ChIP gastrocnemius medialis ENCFF081DTE 153 bp overlap
ChIP gastrocnemius medialis ENCFF145VIB 153 bp overlap
ChIP gastroesophageal sphincter ENCFF043KAM 153 bp overlap
ChIP gastroesophageal sphincter ENCFF070PCA 59 bp overlap
ChIP gastroesophageal sphincter ENCFF238INU 153 bp overlap
ChIP gastroesophageal sphincter ENCFF461UHJ 153 bp overlap
ChIP gastroesophageal sphincter ENCFF826EZZ 153 bp overlap
ChIP prostate gland ENCFF881OMH 135 bp overlap
ChIP right lobe of liver ENCFF026NCK 153 bp overlap
ChIP sigmoid colon ENCFF653CQA 153 bp overlap
ChIP sigmoid colon ENCFF661AMI 153 bp overlap
ChIP sigmoid colon ENCFF725QFT 153 bp overlap
ChIP sigmoid colon ENCFF748YVT 153 bp overlap
ChIP sigmoid colon ENCFF754JQR 137 bp overlap
ChIP spleen ENCFF044PYR 153 bp overlap
ChIP spleen ENCFF446ZGT 153 bp overlap
ChIP spleen ENCFF706IUS 153 bp overlap
ChIP stomach ENCFF278MYS 153 bp overlap
ChIP stomach ENCFF820WZN 128 bp overlap
ChIP suprapubic skin ENCFF832BBO 153 bp overlap
ChIP thyroid gland ENCFF979LRR 153 bp overlap
ChIP tibial nerve ENCFF983HAU 153 bp overlap
ChIP transverse colon ENCFF193UMS 77 bp overlap
ChIP transverse colon ENCFF607LKE 117 bp overlap
ChIP transverse colon ENCFF840PXT 153 bp overlap
ChIP upper lobe of left lung ENCFF199JUI 153 bp overlap
ChIP upper lobe of left lung ENCFF603FIH 153 bp overlap
ChIP upper lobe of left lung ENCFF640VPA 153 bp overlap
ChIP uterus ENCFF566ZPY 153 bp overlap
ChIP vagina ENCFF305NWS 153 bp overlap
ChIP vagina ENCFF384GAB 153 bp overlap
POLR2B 1 dataset
ChIP K562 ENCFF513ENO 153 bp overlap
POLR2G 2 datasets
ChIP K562 ENCFF047BLG 153 bp overlap
ChIP K562 ENCFF648YPL 153 bp overlap
POU5F1 1 dataset
ChIP DE_D1 DED1-OCT4_Batch_II 153 bp overlap
RAD21 3 datasets
ChIP K562 ENCFF634XYR 153 bp overlap
ChIP K562 ENCFF634XYR 62 bp overlap
ChIP liver ENCFF485PAC 132 bp overlap
RB1 1 dataset
ChIP K562 ENCFF627ZBG 153 bp overlap
RBFOX2 3 datasets
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 152 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 152 bp overlap
ChIP K562 ENCFF967GRF 153 bp overlap
SALL1 1 dataset
ChIP HepG2 ENCFF426MCK 153 bp overlap
SCRT2 1 dataset
ChIP HEK293 ENCFF711QQB 82 bp overlap
SIN3A 2 datasets
ChIP A549 ENCFF752ATT 153 bp overlap
ChIP MCF-7 ENCFF437VFY 139 bp overlap
SKI 1 dataset
ChIP HepG2 ENCFF631IPX 153 bp overlap
SKIL 2 datasets
ChIP K562 ENCFF560QSF 153 bp overlap
ChIP K562 ENCFF560QSF 153 bp overlap
SMAD4 1 dataset
ChIP K562 ENCFF628RBP 153 bp overlap
SPEN 1 dataset
ChIP HepG2 ENCFF939VPY 153 bp overlap
SUPT5H 1 dataset
ChIP K562 ENCFF902PAW 153 bp overlap
TAF1 1 dataset
ChIP HepG2 ENCFF946IUP 153 bp overlap
TFAP2A 2 datasets
Motif DE_24h DE_24h-TFAP2A_MA0003.5 9 bp overlap
Motif DE_24h DE_24h-TFAP2A_MA0003.5 9 bp overlap
TFAP2B 2 datasets
Motif DE_24h DE_24h-TFAP2B_MA0812.2 9 bp overlap
ChIP SK-N-SH ENCFF869XXQ 153 bp overlap
TFAP2C 4 datasets
Motif DE_24h DE_24h-TFAP2C_MA0814.3 9 bp overlap
Motif DE_24h DE_24h-TFAP2C_MA0814.3 9 bp overlap
ChIP MCF-7_E2 GSE23852.TFAP2C.MCF-7_E2 126 bp overlap
ChIP MCF-7_ETOH GSE23852.TFAP2C.MCF-7_ETOH 123 bp overlap
TFAP2E 1 dataset
Motif DE_24h DE_24h-TFAP2E_MA1569.2 9 bp overlap
TFAP4 2 datasets
ChIP HepG2 ENCFF932XOY 148 bp overlap
ChIP K562 ENCFF727PXG 153 bp overlap
TFAP4::ETV1 1 dataset
Motif DE_24h DE_24h-TFAP4ETV1_MA1966.2 13 bp overlap
TFAP4::FLI1 1 dataset
Motif DE_24h DE_24h-TFAP4FLI1_MA1967.2 14 bp overlap
TFDP1 1 dataset
ChIP K562 ENCFF584VSB 153 bp overlap
Tcf12 1 dataset
Motif DE_24h DE_24h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_24h DE_24h-Twist2_MA0633.3 6 bp overlap
UBTF 1 dataset
ChIP HepG2 ENCFF424RNN 153 bp overlap
YY1 1 dataset
ChIP liver ENCFF400MBC 153 bp overlap
ZBTB1 1 dataset
ChIP K562 ENCFF038CML 153 bp overlap
ZBTB17 2 datasets
ChIP HEK293 ENCFF865LIO 153 bp overlap
ChIP K562 ENCFF731UTU 153 bp overlap
ZBTB2 1 dataset
ChIP K562 ENCFF290ESQ 153 bp overlap
ZBTB26 2 datasets
ChIP HEK293 ENCFF752POA 153 bp overlap
ChIP HEK293 ENCFF752TCU 153 bp overlap
ZFP91 5 datasets
ChIP HepG2 ENCFF012CME 153 bp overlap
ChIP HepG2 ENCFF012CME 153 bp overlap
ChIP K562 ENCFF185FKB 153 bp overlap
ChIP K562 ENCFF185FKB 54 bp overlap
ChIP K562 ENCFF501CDP 153 bp overlap
ZFX 4 datasets
ChIP HCT116 ENCFF324IZY 153 bp overlap
ChIP HepG2 ENCFF016NZF 148 bp overlap
ChIP K562 ENCFF536AJO 153 bp overlap
ChIP MCF-7 ENCFF009NAJ 153 bp overlap
ZNF217 1 dataset
ChIP MCF-7 ENCFF379OSU 153 bp overlap
ZNF341 1 dataset
ChIP HEK293 ENCFF944VMC 149 bp overlap
ZNF639 1 dataset
ChIP K562 ENCFF267NLX 153 bp overlap
ZNF687 1 dataset
ChIP HepG2 ENCFF653WIX 153 bp overlap
ZNF7 1 dataset
ChIP K562 ENCFF096OHS 153 bp overlap
ZNF777 1 dataset
ChIP HepG2 ENCFF362XDA 153 bp overlap
ZSCAN30 1 dataset
ChIP HEK293 ENCFF082YBI 153 bp overlap
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