chr6 : 166,551,739 166,552,446
707 bp 88 TFs 3 linked genes
This 707 bp open chromatin element is linked to RPS6KA2, MPC1, and SFT2D1 and is bound by 88 transcription factors.
Linked Genes
3 genes
Gene Expression Dist. to TSS Distance Link type
RPS6KA2 75.1 kb Distal Multiome
MPC1 169.2 kb Distal Multiome
SFT2D1 209.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:166,546,739 – 166,557,446
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
88 transcription factors
Source
Cell type
ARNTL 1 dataset
ChIP U2OS GSE44236.ARNTL.U2OS 167 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 562 bp overlap
ATF2 1 dataset
ChIP WA01 ENCSR000BQU.ATF2.WA01 155 bp overlap
Ar 3 datasets
Motif DE_12h DE_12h-Ar_MA0007.4 16 bp overlap
Motif DE_48h DE_48h-Ar_MA0007.4 16 bp overlap
Motif DE_60h DE_60h-Ar_MA0007.4 16 bp overlap
Arid3a 4 datasets
Motif DE_12h DE_12h-Arid3a_MA0151.1 6 bp overlap
Motif DE_36h DE_36h-Arid3a_MA0151.1 6 bp overlap
Motif DE_48h DE_48h-Arid3a_MA0151.1 6 bp overlap
Motif DE_60h DE_60h-Arid3a_MA0151.1 6 bp overlap
BACH1 2 datasets
ChIP H1 ENCFF282VDB 321 bp overlap
ChIP WA01 ENCSR000EBQ.BACH1.WA01 189 bp overlap
BARX2 1 dataset
Motif DE_12h DE_12h-BARX2_MA1471.2 9 bp overlap
BCOR 1 dataset
ChIP WA01_RNF2-R_Doxycyclin GSE104690.BCOR.WA01_RNF2-R_Doxycyclin 158 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 201 bp overlap
CBX8 1 dataset
ChIP K-562 ENCSR000ATW.CBX8.K-562 318 bp overlap
CEBPA 1 dataset
Motif DE_12h DE_12h-CEBPA_MA0102.5 10 bp overlap
CEBPD 1 dataset
Motif DE_12h DE_12h-CEBPD_MA0836.3 8 bp overlap
CHD1 1 dataset
ChIP WA01 ENCSR000AQK.CHD1.WA01 157 bp overlap
CTBP2 1 dataset
ChIP WA01 ENCSR000EUO.CTBP2.WA01 352 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF093OYK 116 bp overlap
ChIP BLaER1 ENCFF460KDD 155 bp overlap
Crx 4 datasets
Motif DE_12h DE_12h-Crx_MA0467.3 6 bp overlap
Motif DE_36h DE_36h-Crx_MA0467.3 6 bp overlap
Motif DE_48h DE_48h-Crx_MA0467.3 6 bp overlap
Motif DE_60h DE_60h-Crx_MA0467.3 6 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 458 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 231 bp overlap
EZH2 1 dataset
ChIP A-1847_CARM1-KO GSE95643.EZH2.A-1847_CARM1-KO 707 bp overlap
FOXA2 2 datasets
ChIP DE DE-FOXA2-1 671 bp overlap
ChIP DE DE-FOXA2-2 707 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 650 bp overlap
ChIP DE DE-GATA4-2 587 bp overlap
GATA6 5 datasets
ChIP DE DE-GATA6-1 365 bp overlap
ChIP DE DE-GATA6-2 601 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 360 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 475 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 481 bp overlap
GLIS2 2 datasets
Motif DE_12h DE_12h-GLIS2_MA0736.1 14 bp overlap
Motif DE_36h DE_36h-GLIS2_MA0736.1 14 bp overlap
GSC 4 datasets
Motif DE_12h DE_12h-GSC_MA0648.2 6 bp overlap
Motif DE_36h DE_36h-GSC_MA0648.2 6 bp overlap
Motif DE_48h DE_48h-GSC_MA0648.2 6 bp overlap
Motif DE_60h DE_60h-GSC_MA0648.2 6 bp overlap
GSC2 4 datasets
Motif DE_12h DE_12h-GSC2_MA0891.2 6 bp overlap
Motif DE_36h DE_36h-GSC2_MA0891.2 6 bp overlap
Motif DE_48h DE_48h-GSC2_MA0891.2 6 bp overlap
Motif DE_60h DE_60h-GSC2_MA0891.2 6 bp overlap
Gli2 2 datasets
Motif DE_12h DE_12h-Gli2_MA0734.4 9 bp overlap
Motif DE_36h DE_36h-Gli2_MA0734.4 9 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 356 bp overlap
IKZF2 1 dataset
Motif DE_12h DE_12h-IKZF2_MA2326.1 6 bp overlap
Irf1 4 datasets
Motif DE_12h DE_12h-Irf1_MA0050.4 11 bp overlap
Motif DE_36h DE_36h-Irf1_MA0050.4 11 bp overlap
Motif DE_48h DE_48h-Irf1_MA0050.4 11 bp overlap
Motif DE_60h DE_60h-Irf1_MA0050.4 11 bp overlap
JUN 4 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 438 bp overlap
ChIP DE_D1 S13-DE-d1-JUN-exp1 264 bp overlap
ChIP DE_D1 S40-DE-d1-JUN-exp2 356 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 586 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 281 bp overlap
MAFK 4 datasets
ChIP H1 ENCFF854XWE 285 bp overlap
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 151 bp overlap
ChIP HepG2 ENCFF743ZOF 241 bp overlap
ChIP WA01 ENCSR000EBS.MAFK.WA01 137 bp overlap
MAZ 2 datasets
Motif DE_12h DE_12h-MAZ_MA1522.2 8 bp overlap
Motif DE_60h DE_60h-MAZ_MA1522.2 8 bp overlap
MED26 1 dataset
ChIP HEK293T GSE121024.MED26.HEK293T 341 bp overlap
MEIS1 1 dataset
Motif DE_12h DE_12h-MEIS1_MA0498.3 5 bp overlap
NANOG 9 datasets
ChIP GM23338 ENCSR061DGF.NANOG.GM23338 154 bp overlap
ChIP H1 ENCFF747ZPQ 241 bp overlap
ChIP HUES-8 GSE109524.NANOG.HUES-8 438 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 244 bp overlap
ChIP WA01 ENCSR000BMT.NANOG.WA01 178 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 533 bp overlap
ChIP WA09 GSE105028.NANOG.WA09 390 bp overlap
ChIP WA09_heat-shock GSE105028.NANOG.WA09_heat-shock 284 bp overlap
ChIP hESC GSE20650.NANOG.hESC 244 bp overlap
NR1H4::RXRA 4 datasets
Motif DE_12h DE_12h-NR1H4RXRA_MA1146.2 13 bp overlap
Motif DE_36h DE_36h-NR1H4RXRA_MA1146.2 13 bp overlap
Motif DE_48h DE_48h-NR1H4RXRA_MA1146.2 13 bp overlap
Motif DE_60h DE_60h-NR1H4RXRA_MA1146.2 13 bp overlap
NR2C2 4 datasets
Motif DE_12h DE_12h-NR2C2_MA0504.2 14 bp overlap
Motif DE_36h DE_36h-NR2C2_MA0504.2 14 bp overlap
Motif DE_48h DE_48h-NR2C2_MA0504.2 14 bp overlap
Motif DE_60h DE_60h-NR2C2_MA0504.2 14 bp overlap
NR2F1 4 datasets
Motif DE_12h DE_12h-NR2F1_MA1538.1 15 bp overlap
Motif DE_36h DE_36h-NR2F1_MA1538.1 15 bp overlap
Motif DE_48h DE_48h-NR2F1_MA1538.1 15 bp overlap
Motif DE_60h DE_60h-NR2F1_MA1538.1 15 bp overlap
NR2F6 4 datasets
Motif DE_12h DE_12h-NR2F6_MA1539.1 15 bp overlap
Motif DE_36h DE_36h-NR2F6_MA1539.1 15 bp overlap
Motif DE_48h DE_48h-NR2F6_MA1539.1 15 bp overlap
Motif DE_60h DE_60h-NR2F6_MA1539.1 15 bp overlap
NR3C1 3 datasets
Motif DE_12h DE_12h-NR3C1_MA0113.4 15 bp overlap
Motif DE_48h DE_48h-NR3C1_MA0113.4 15 bp overlap
Motif DE_60h DE_60h-NR3C1_MA0113.4 15 bp overlap
NR3C2 3 datasets
Motif DE_12h DE_12h-NR3C2_MA0727.2 15 bp overlap
Motif DE_48h DE_48h-NR3C2_MA0727.2 15 bp overlap
Motif DE_60h DE_60h-NR3C2_MA0727.2 15 bp overlap
NR4A2::RXRA 4 datasets
Motif DE_12h DE_12h-NR4A2RXRA_MA1147.2 13 bp overlap
Motif DE_36h DE_36h-NR4A2RXRA_MA1147.2 13 bp overlap
Motif DE_48h DE_48h-NR4A2RXRA_MA1147.2 13 bp overlap
Motif DE_60h DE_60h-NR4A2RXRA_MA1147.2 13 bp overlap
OTX1 4 datasets
Motif DE_12h DE_12h-OTX1_MA0711.2 6 bp overlap
Motif DE_36h DE_36h-OTX1_MA0711.2 6 bp overlap
Motif DE_48h DE_48h-OTX1_MA0711.2 6 bp overlap
Motif DE_60h DE_60h-OTX1_MA0711.2 6 bp overlap
PBX3 1 dataset
Motif DE_12h DE_12h-PBX3_MA1114.2 11 bp overlap
PGR 3 datasets
Motif DE_12h DE_12h-PGR_MA2327.1 9 bp overlap
Motif DE_48h DE_48h-PGR_MA2327.1 9 bp overlap
Motif DE_60h DE_60h-PGR_MA2327.1 9 bp overlap
PITX1 4 datasets
Motif DE_12h DE_12h-PITX1_MA0682.3 6 bp overlap
Motif DE_36h DE_36h-PITX1_MA0682.3 6 bp overlap
Motif DE_48h DE_48h-PITX1_MA0682.3 6 bp overlap
Motif DE_60h DE_60h-PITX1_MA0682.3 6 bp overlap
PITX2 4 datasets
Motif DE_12h DE_12h-PITX2_MA1547.2 8 bp overlap
Motif DE_36h DE_36h-PITX2_MA1547.2 8 bp overlap
Motif DE_48h DE_48h-PITX2_MA1547.2 8 bp overlap
Motif DE_60h DE_60h-PITX2_MA1547.2 8 bp overlap
PITX3 4 datasets
Motif DE_12h DE_12h-PITX3_MA0714.2 6 bp overlap
Motif DE_36h DE_36h-PITX3_MA0714.2 6 bp overlap
Motif DE_48h DE_48h-PITX3_MA0714.2 6 bp overlap
Motif DE_60h DE_60h-PITX3_MA0714.2 6 bp overlap
PKNOX1 1 dataset
Motif DE_12h DE_12h-PKNOX1_MA0782.3 10 bp overlap
POU5F1 8 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 463 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 493 bp overlap
ChIP NCCIT_SNF5 GSE36134.POU5F1.NCCIT_SNF5 687 bp overlap
ChIP SKM-1 GSE93706.POU5F1.SKM-1 249 bp overlap
ChIP hESC ENCSR264RJX.POU5F1.hESC 136 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 356 bp overlap
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 440 bp overlap
ChIP hiPSC GSE56567.POU5F1.hiPSC 294 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 541 bp overlap
RARA::RXRA 4 datasets
Motif DE_12h DE_12h-RARARXRA_MA0159.1 17 bp overlap
Motif DE_36h DE_36h-RARARXRA_MA0159.1 17 bp overlap
Motif DE_48h DE_48h-RARARXRA_MA0159.1 17 bp overlap
Motif DE_60h DE_60h-RARARXRA_MA0159.1 17 bp overlap
RELA 1 dataset
ChIP KB GSE52469.RELA.KB 103 bp overlap
RHOXF1 4 datasets
Motif DE_12h DE_12h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_36h DE_36h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_48h DE_48h-RHOXF1_MA0719.2 6 bp overlap
Motif DE_60h DE_60h-RHOXF1_MA0719.2 6 bp overlap
SIN3A 1 dataset
ChIP WA01 ENCSR000EBO.SIN3A.WA01 142 bp overlap
SMAD2 3 datasets
Motif DE_12h DE_12h-SMAD2_MA1964.2 6 bp overlap
ChIP hESC_YAP-_activinA_15h GSE99202.SMAD2.hESC_YAP-_activinA_15h 511 bp overlap
ChIP hESC_activinA_15h GSE99202.SMAD2.hESC_activinA_15h 315 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 612 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 659 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 707 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 592 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 645 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 707 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 658 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 638 bp overlap
SMAD3 1 dataset
ChIP BG03_DIFF_48H GSE36578.SMAD3.BG03_DIFF_48H 442 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 161 bp overlap
SMARCA4 2 datasets
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 94 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 360 bp overlap
SOX10 1 dataset
Motif DE_12h DE_12h-SOX10_MA0442.3 6 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 489 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 607 bp overlap
SOX2 1 dataset
ChIP hiPSC GSE56567.SOX2.hiPSC 321 bp overlap
SOX4 1 dataset
Motif DE_12h DE_12h-SOX4_MA0867.3 8 bp overlap
STAT1 1 dataset
Motif DE_12h DE_12h-STAT1_MA0137.4 9 bp overlap
Sox11 1 dataset
Motif DE_12h DE_12h-Sox11_MA0869.3 8 bp overlap
Stat4 1 dataset
Motif DE_12h DE_12h-Stat4_MA0518.2 10 bp overlap
THRB 2 datasets
Motif DE_12h DE_12h-THRB_MA1575.2 17 bp overlap
Motif DE_36h DE_36h-THRB_MA1575.2 17 bp overlap
VEZF1 2 datasets
Motif DE_12h DE_12h-VEZF1_MA1578.2 6 bp overlap
Motif DE_36h DE_36h-VEZF1_MA1578.2 6 bp overlap
ZBTB17 1 dataset
Motif DE_12h DE_12h-ZBTB17_MA2102.1 8 bp overlap
ZBTB21 1 dataset
ChIP WTC11 ENCFF677ZYY 401 bp overlap
ZBTB32 4 datasets
Motif DE_12h DE_12h-ZBTB32_MA1580.1 10 bp overlap
Motif DE_36h DE_36h-ZBTB32_MA1580.1 10 bp overlap
Motif DE_48h DE_48h-ZBTB32_MA1580.1 10 bp overlap
Motif DE_60h DE_60h-ZBTB32_MA1580.1 10 bp overlap
ZIC5 2 datasets
Motif DE_12h DE_12h-ZIC5_MA1584.2 15 bp overlap
Motif DE_36h DE_36h-ZIC5_MA1584.2 15 bp overlap
ZNF143 1 dataset
ChIP HeLa GSE39263.ZNF143.HeLa 336 bp overlap
ZNF148 2 datasets
Motif DE_12h DE_12h-ZNF148_MA1653.2 10 bp overlap
Motif DE_60h DE_60h-ZNF148_MA1653.2 10 bp overlap
ZNF257 1 dataset
Motif DE_12h DE_12h-ZNF257_MA1710.2 10 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 416 bp overlap
ZNF331 4 datasets
Motif DE_12h DE_12h-ZNF331_MA1726.2 10 bp overlap
Motif DE_36h DE_36h-ZNF331_MA1726.2 10 bp overlap
Motif DE_48h DE_48h-ZNF331_MA1726.2 10 bp overlap
Motif DE_60h DE_60h-ZNF331_MA1726.2 10 bp overlap
ZNF8 3 datasets
Motif DE_12h DE_12h-ZNF8_MA1718.1 20 bp overlap
Motif DE_48h DE_48h-ZNF8_MA1718.1 20 bp overlap
Motif DE_60h DE_60h-ZNF8_MA1718.1 20 bp overlap
ZSCAN4 1 dataset
Motif DE_12h DE_12h-ZSCAN4_MA1155.1 15 bp overlap
Zfp335 2 datasets
Motif DE_12h DE_12h-Zfp335_MA2002.2 7 bp overlap
Motif DE_60h DE_60h-Zfp335_MA2002.2 7 bp overlap