chr1 : 116,420,956 – 116,421,526
570 bp 81 TFs 4 linked genes
This 570 bp open chromatin element is linked to 4 target genes and is bound by 81 transcription factors.
Linked Genes
4 genes
Distance
Link type
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
ATP1A1-AS1 2.4 kb Proximal Proximity
ATP1A1 47.8 kb Distal Multiome
CD58 149.9 kb Distal Multiome
IGSF3 246.6 kb Distal Multiome
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:116,415,956 – 116,426,526
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
81 transcription factors
Source
Cell type
BRD4 2 datasets
ChIP CLL_patient3_4h_CpG GSE109411.BRD4.CLL_patient3_4h_CpG 208 bp overlap
ChIP HEK293_sgNT GSE129407.BRD4.HEK293_sgNT 119 bp overlap
CCNT2 1 dataset
ChIP K562 ENCFF199GSZ 122 bp overlap
CTCF 2 datasets
ChIP fibroblast of lung ENCFF505HVQ 143 bp overlap
ChIP fibroblast of lung ENCFF505HVQ 261 bp overlap
EGR1 2 datasets
ChIP HepG2 ENCFF674RQO 250 bp overlap
ChIP HepG2 ENCFF674RQO 456 bp overlap
ELF1 7 datasets
Motif DE_36h DE_36h-ELF1_MA0473.4 9 bp overlap
ChIP Hep-G2 ENCSR321VGW.ELF1.Hep-G2 139 bp overlap
ChIP Hep-G2 ENCSR000BMZ.ELF1.Hep-G2 150 bp overlap
ChIP HepG2 ENCFF838BCU 206 bp overlap
ChIP K-562 ENCSR000BMD.ELF1.K-562 173 bp overlap
ChIP K562 ENCFF496AKI 213 bp overlap
ChIP SK-N-MC_SHFLI_96H GSE61944.ELF1.SK-N-MC_SHFLI_96H 190 bp overlap
ELF3 4 datasets
Motif DE_36h DE_36h-ELF3_MA0640.3 9 bp overlap
ChIP PDAC GSE64557.ELF3.PDAC 297 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 306 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 312 bp overlap
EOMES 1 dataset
ChIP hESC GSE26097.EOMES.hESC 303 bp overlap
ESRRA 1 dataset
Motif DE_36h DE_36h-ESRRA_MA0592.4 9 bp overlap
ESRRB 1 dataset
Motif DE_36h DE_36h-ESRRB_MA0141.4 10 bp overlap
ETV4 1 dataset
ChIP Hep-G2 ENCSR714YZG.ETV4.Hep-G2 232 bp overlap
Esrrg 1 dataset
Motif DE_36h DE_36h-Esrrg_MA0643.2 9 bp overlap
FOXA1 1 dataset
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 90 bp overlap
FOXA2 1 dataset
ChIP DE DE-FOXA2-1 389 bp overlap
FOXP1 1 dataset
ChIP HepG2 ENCFF823ERM 55 bp overlap
GATA4 2 datasets
ChIP DE DE-GATA4-1 419 bp overlap
ChIP DE DE-GATA4-2 435 bp overlap
GATA6 9 datasets
ChIP DE DE-GATA6-1 467 bp overlap
ChIP DE DE-GATA6-2 440 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 501 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 537 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 430 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 570 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 501 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 516 bp overlap
ChIP endoderm_KO GSE117136.GATA6.endoderm_KO 480 bp overlap
GATAD2A 1 dataset
ChIP HepG2 ENCFF252XNH 93 bp overlap
HMBOX1 1 dataset
ChIP K562 ENCFF055GAZ 140 bp overlap
HNRNPLL 2 datasets
ChIP K-562 ENCSR112RNT.HNRNPLL.K-562 158 bp overlap
ChIP K-562 GSE120104.HNRNPLL.K-562 158 bp overlap
HOXA5 1 dataset
ChIP HepG2 ENCFF580MCT 135 bp overlap
IKZF1 2 datasets
ChIP K-562 ENCSR395HWC.IKZF1.K-562 287 bp overlap
ChIP K562 ENCFF771OHZ 497 bp overlap
Ikzf3 1 dataset
Motif DE_36h DE_36h-Ikzf3_MA1992.2 9 bp overlap
JUN 2 datasets
ChIP DE_D2 S02-DE-d2-JUN-exp1 316 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 329 bp overlap
KDM1A 1 dataset
ChIP K562 ENCFF934ZRG 87 bp overlap
KLF1 1 dataset
Motif DE_36h DE_36h-KLF1_MA0493.3 8 bp overlap
KLF10 1 dataset
Motif DE_36h DE_36h-KLF10_MA1511.2 9 bp overlap
KLF11 1 dataset
Motif DE_36h DE_36h-KLF11_MA1512.2 10 bp overlap
KLF14 1 dataset
Motif DE_36h DE_36h-KLF14_MA0740.2 9 bp overlap
KLF16 1 dataset
Motif DE_36h DE_36h-KLF16_MA0741.1 11 bp overlap
KLF17 1 dataset
Motif DE_36h DE_36h-KLF17_MA1514.2 14 bp overlap
KLF2 1 dataset
Motif DE_36h DE_36h-KLF2_MA1515.2 8 bp overlap
KLF4 1 dataset
Motif DE_36h DE_36h-KLF4_MA0039.5 8 bp overlap
KLF5 1 dataset
Motif DE_36h DE_36h-KLF5_MA0599.1 10 bp overlap
KLF9 1 dataset
Motif DE_36h DE_36h-KLF9_MA1107.3 11 bp overlap
MED1 1 dataset
ChIP HepG2 ENCFF495TSS 216 bp overlap
MGA 1 dataset
Motif DE_36h DE_36h-MGA_MA0801.1 8 bp overlap
NKX2-5 1 dataset
Motif DE_36h DE_36h-NKX2-5_MA0063.3 7 bp overlap
NR2C1 1 dataset
Motif DE_36h DE_36h-NR2C1_MA1535.2 6 bp overlap
NR2C2 1 dataset
Motif DE_36h DE_36h-NR2C2_MA1536.2 6 bp overlap
NR2F2 1 dataset
Motif DE_36h DE_36h-NR2F2_MA1111.2 7 bp overlap
NR5A1 3 datasets
Motif DE_36h DE_36h-NR5A1_MA1540.3 12 bp overlap
ChIP Hep-G2 ENCSR310OZS.NR5A1.Hep-G2 205 bp overlap
ChIP HepG2 ENCFF970YZO 275 bp overlap
NUTM1 1 dataset
ChIP embryonic-kidney_induced GSE133122.NUTM1.embryonic-kidney_induced 142 bp overlap
Nr1H2 1 dataset
Motif DE_36h DE_36h-Nr1H2_MA1996.2 6 bp overlap
Nr1H4 1 dataset
Motif DE_36h DE_36h-Nr1H4_MA1110.3 6 bp overlap
Nr1h3 1 dataset
Motif DE_36h DE_36h-Nr1h3_MA2337.1 6 bp overlap
Nr5A2 1 dataset
Motif DE_36h DE_36h-Nr5A2_MA0505.3 9 bp overlap
PATZ1 1 dataset
Motif DE_36h DE_36h-PATZ1_MA1961.2 11 bp overlap
PAXIP1 1 dataset
ChIP Hep-G2 ENCSR530ARJ.PAXIP1.Hep-G2 152 bp overlap
PHF8 1 dataset
ChIP Hep-G2 ENCSR604VAE.PHF8.Hep-G2 89 bp overlap
PRDM10 2 datasets
ChIP HEK293 ENCFF145WQQ 493 bp overlap
ChIP Hep-G2 ENCSR289PSX.PRDM10.Hep-G2 202 bp overlap
PROX1 1 dataset
ChIP HepG2 ENCFF016ZJS 186 bp overlap
Ppara 1 dataset
Motif DE_36h DE_36h-Ppara_MA2338.1 7 bp overlap
RARA 1 dataset
ChIP HepG2 ENCFF582XUA 317 bp overlap
RARG 1 dataset
Motif DE_36h DE_36h-RARG_MA1553.2 13 bp overlap
RORA 1 dataset
Motif DE_36h DE_36h-RORA_MA0071.1 10 bp overlap
RREB1 1 dataset
Motif DE_36h DE_36h-RREB1_MA0073.2 19 bp overlap
RXRB 1 dataset
Motif DE_36h DE_36h-RXRB_MA1555.1 14 bp overlap
RXRG 1 dataset
Motif DE_36h DE_36h-RXRG_MA1556.1 14 bp overlap
SALL1 1 dataset
ChIP HepG2 ENCFF426MCK 215 bp overlap
SIN3A 1 dataset
ChIP HUVEC-C GSE103245.SIN3A.HUVEC-C 50 bp overlap
SMAD2-3 3 datasets
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 539 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 383 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 380 bp overlap
SMAD2_3 5 datasets
ChIP DE_D1 S07-DE-d1-SMAD2_3-exp1 368 bp overlap
ChIP DE_D1 S12-DE-d1-SMAD2_3-exp1 346 bp overlap
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 351 bp overlap
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 489 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 477 bp overlap
SMAD3 1 dataset
ChIP Hep-G2 ENCSR005GZH.SMAD3.Hep-G2 138 bp overlap
SMAD4 1 dataset
ChIP endoderm GSE29422.SMAD4.endoderm 178 bp overlap
SOX17 1 dataset
ChIP DE_D2 DED2-SOX17_Batch_II 290 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 482 bp overlap
SP3 1 dataset
Motif DE_36h DE_36h-SP3_MA0746.3 11 bp overlap
SP8 1 dataset
Motif DE_36h DE_36h-SP8_MA0747.2 11 bp overlap
TBX1 1 dataset
Motif DE_36h DE_36h-TBX1_MA0805.1 8 bp overlap
TBX15 1 dataset
Motif DE_36h DE_36h-TBX15_MA0803.1 8 bp overlap
TBX5 1 dataset
Motif DE_36h DE_36h-TBX5_MA0807.1 8 bp overlap
VEZF1 1 dataset
Motif DE_36h DE_36h-VEZF1_MA1578.2 6 bp overlap
ZBTB11 1 dataset
ChIP K562 ENCFF215OUF 219 bp overlap
ZBTB7A 1 dataset
Motif DE_36h DE_36h-ZBTB7A_MA0750.3 9 bp overlap
ZBTB7B 2 datasets
ChIP Hep-G2 ENCSR322ULL.ZBTB7B.Hep-G2 125 bp overlap
ChIP HepG2 ENCFF763OCV 227 bp overlap
ZGPAT 1 dataset
ChIP Hep-G2 ENCSR704IGU.ZGPAT.Hep-G2 232 bp overlap
ZNF148 2 datasets
Motif DE_36h DE_36h-ZNF148_MA1653.2 10 bp overlap
ChIP K-562 ENCSR018MSO.ZNF148.K-562 248 bp overlap
ZNF281 2 datasets
Motif DE_36h DE_36h-ZNF281_MA1630.3 10 bp overlap
ChIP HepG2 ENCFF585QNU 246 bp overlap
ZNF547 1 dataset
ChIP HepG2 ENCFF834XWI 304 bp overlap
ZNF580 2 datasets
ChIP HepG2 ENCFF943KSI 74 bp overlap
ChIP HepG2 ENCFF943KSI 274 bp overlap
ZNF684 1 dataset
Motif DE_36h DE_36h-ZNF684_MA1600.2 14 bp overlap
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