chr6 : 99,607,682 – 99,608,664
982 bp 63 TFs 1 linked gene
This 982 bp open chromatin element is linked to PRDM13 and is bound by 63 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
PRDM13 850 bp At TSS Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr6:99,602,682 – 99,613,664
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
63 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 208 bp overlap
AFF4 1 dataset
ChIP MCF-7 GSE144036.AFF4.MCF-7 305 bp overlap
APC 1 dataset
ChIP HCT-116 GSE103894.APC.HCT-116 251 bp overlap
AR 1 dataset
ChIP LNCaP-abl GSE39459.AR.LNCaP-abl 209 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 149 bp overlap
Atoh1 1 dataset
Motif DE_12h DE_12h-Atoh1_MA0461.3 8 bp overlap
BCOR 2 datasets
ChIP WA01_KDM2B_KO GSE104690.BCOR.WA01_KDM2B_KO 764 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 570 bp overlap
BHLHA15 1 dataset
Motif DE_12h DE_12h-BHLHA15_MA0607.2 10 bp overlap
BHLHE22 1 dataset
Motif DE_12h DE_12h-BHLHE22_MA0818.2 10 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 790 bp overlap
BRD4 6 datasets
ChIP CLL_patient2_4h_CpG_BET GSE109411.BRD4.CLL_patient2_4h_CpG_BET 251 bp overlap
ChIP CLL_patient3_4h_CpG_BET GSE109411.BRD4.CLL_patient3_4h_CpG_BET 207 bp overlap
ChIP CLL_patient4_4h_CpG_BET GSE109411.BRD4.CLL_patient4_4h_CpG_BET 330 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 269 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 181 bp overlap
ChIP retina_AB1-RB GSE86981.BRD4.retina_AB1-RB 188 bp overlap
BRF1 1 dataset
ChIP H9_Activin GSE94418.BRF1.H9_Activin 148 bp overlap
CBX2 1 dataset
ChIP K-562 ENCSR000ATU.CBX2.K-562 543 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 171 bp overlap
CBX7 1 dataset
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 148 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 296 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 195 bp overlap
Cebpa 2 datasets
ChIP BLaER1 ENCFF031ISE 496 bp overlap
ChIP BLaER1 ENCFF364PUR 251 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 151 bp overlap
ESR1 2 datasets
ChIP MCF-7 GSE48930.ESR1.MCF-7 176 bp overlap
ChIP breast_tumor_Male_14 GSE104399.ESR1.breast_tumor_Male_14 177 bp overlap
ETS1 3 datasets
ChIP HUVEC-C_4h GSE93030.ETS1.HUVEC-C_4h 180 bp overlap
ChIP HUVEC-C_VEGF_4H GSE41166.ETS1.HUVEC-C_VEGF_4H 192 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.ETS1.HUVEC-C_VEGF_4h 180 bp overlap
EZH2 28 datasets
ChIP B cell ENCFF803EMO 425 bp overlap
ChIP DOHH2 ENCFF528GDC 441 bp overlap
ChIP DOHH2 ENCFF528GDC 441 bp overlap
ChIP DU145_SH4 GSE135623.EZH2.DU145_SH4 503 bp overlap
ChIP GM23248 ENCFF404ZHM 183 bp overlap
ChIP GM23248 ENCFF404ZHM 448 bp overlap
ChIP GM23338 ENCFF613YON 982 bp overlap
ChIP GM23338 ENCFF886DXX 420 bp overlap
ChIP H1 ENCFF232NZA 982 bp overlap
ChIP HepG2 ENCFF912EIW 837 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 434 bp overlap
ChIP LNCaP GSE39459.EZH2.LNCaP 261 bp overlap
ChIP SK-N-SH ENCFF657FZK 386 bp overlap
ChIP T98G GSE112240.EZH2.T98G 397 bp overlap
ChIP VCaP_DHAT_2H GSE28950.EZH2.VCaP_DHAT_2H 398 bp overlap
ChIP astrocyte ENCFF365JTP 982 bp overlap
ChIP astrocyte ENCFF365JTP 982 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 982 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 807 bp overlap
ChIP fibroblast of lung ENCFF479BAW 184 bp overlap
ChIP hESC GSE113817.EZH2.hESC 408 bp overlap
ChIP hepatocyte ENCFF118DKH 357 bp overlap
ChIP hepatocyte ENCFF552DZB 982 bp overlap
ChIP keratinocyte ENCFF070STK 155 bp overlap
ChIP keratinocyte ENCFF070STK 242 bp overlap
ChIP myoblast_skeletal_muscle ENCSR000ARH.EZH2.myoblast_skeletal_muscle 755 bp overlap
ChIP neural progenitor cell ENCFF018MKA 982 bp overlap
ChIP neural progenitor cell ENCFF472NFV 982 bp overlap
EZH2_phosphoT487 1 dataset
ChIP SK-N-SH ENCSR297MUV.EZH2_phosphoT487.SK-N-SH 205 bp overlap
HDAC1 1 dataset
ChIP PC-3 GSE147455.HDAC1.PC-3 136 bp overlap
HDAC2 1 dataset
ChIP PC-3 GSE147455.HDAC2.PC-3 147 bp overlap
JUN 3 datasets
ChIP 786-O GSE86092.JUN.786-O 256 bp overlap
ChIP ESC S34-ESC-d0-JUN-exp2 90 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 299 bp overlap
KDM4A 1 dataset
ChIP H1 ENCFF078LED 620 bp overlap
KDM6B 1 dataset
ChIP CUTLL1 GSE56694.KDM6B.CUTLL1 133 bp overlap
MTA1 1 dataset
ChIP Hep-G2 ENCSR983KRB.MTA1.Hep-G2 220 bp overlap
MTF2 1 dataset
ChIP DU145_CTR GSE135623.MTF2.DU145_CTR 536 bp overlap
MYC 1 dataset
ChIP U2OS_SHMYC GSE77356.MYC.U2OS_SHMYC 93 bp overlap
MYCN 1 dataset
ChIP NB-1643 GSE138295.MYCN.NB-1643 229 bp overlap
NANOG 1 dataset
ChIP WA09 GSE105028.NANOG.WA09 243 bp overlap
NR1D1 1 dataset
Motif DE_12h DE_12h-NR1D1_MA1531.2 14 bp overlap
OGG1 3 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 305 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 319 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 339 bp overlap
PCGF2 2 datasets
ChIP fibroblast_MET GSE55605.PCGF2.fibroblast_MET 641 bp overlap
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 145 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 270 bp overlap
POU5F1 3 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 277 bp overlap
ChIP HUES-8 GSE109524.POU5F1.HUES-8 440 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 311 bp overlap
PRDM10 2 datasets
ChIP Hep-G2 ENCSR289PSX.PRDM10.Hep-G2 215 bp overlap
ChIP K-562 ENCSR120MPG.PRDM10.K-562 209 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 148 bp overlap
RING1 1 dataset
ChIP SYO-1_shRING1A-B GSE139053.RING1.SYO-1_shRING1A-B 432 bp overlap
RNF2 1 dataset
ChIP H1 ENCFF239FFS 982 bp overlap
RUNX1 1 dataset
ChIP Jurkat GSE85524.RUNX1.Jurkat 249 bp overlap
Rarb 1 dataset
Motif DE_12h DE_12h-Rarb_MA0857.1 16 bp overlap
Rarg 1 dataset
Motif DE_12h DE_12h-Rarg_MA0859.2 15 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 248 bp overlap
SMAD2_3 1 dataset
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 250 bp overlap
SMARCC1 2 datasets
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 982 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SMARCC1.SYO-1_shRING1A-B 88 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 172 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 237 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 229 bp overlap
SS18 5 datasets
ChIP Aska-SS GSE108025.SS18.Aska-SS 292 bp overlap
ChIP Aska-SS GSE108025.SS18.Aska-SS 208 bp overlap
ChIP Aska-SS_BAF47KO1 GSE108025.SS18.Aska-SS_BAF47KO1 279 bp overlap
ChIP SYO-1 GSE108025.SS18.SYO-1 203 bp overlap
ChIP SYO-1_shRING1A-B GSE139053.SS18.SYO-1_shRING1A-B 298 bp overlap
SS18-SSX 2 datasets
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 126 bp overlap
ChIP fibroblast_78aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_78aa-SSX-Tail 220 bp overlap
SUZ12 7 datasets
ChIP GM12878 ENCSR744XTG.SUZ12.GM12878 306 bp overlap
ChIP H1 ENCFF881NFR 982 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 313 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 329 bp overlap
ChIP LNCaP-abl GSE39459.SUZ12.LNCaP-abl 455 bp overlap
ChIP NT2/D1 ENCFF574SXS 615 bp overlap
ChIP SYO-1_shCt GSE139053.SUZ12.SYO-1_shCt 715 bp overlap
TBP 1 dataset
ChIP K-562 GSE55306.TBP.K-562 123 bp overlap
TCF12 1 dataset
ChIP WA01 ENCSR000BIT.TCF12.WA01 135 bp overlap
TCF21 1 dataset
Motif DE_12h DE_12h-TCF21_MA1568.2 10 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 117 bp overlap
ChIP UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_2d_TFAP2C_Induc 247 bp overlap
TRIM28 1 dataset
ChIP AF22 GSE84259.TRIM28.AF22 434 bp overlap
ZBTB48 1 dataset
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 464 bp overlap
ZNF263 1 dataset
ChIP K-562 ENCSR000EWN.ZNF263.K-562 193 bp overlap
ZNF534 1 dataset
ChIP HEK293T GSE78099.ZNF534.HEK293T 110 bp overlap
ZNF550 1 dataset
ChIP Hep-G2 ENCSR198BHH.ZNF550.Hep-G2 262 bp overlap
ZNF652 1 dataset
ChIP Hep-G2 ENCSR502GAX.ZNF652.Hep-G2 82 bp overlap
ZNF93 1 dataset
Motif DE_12h DE_12h-ZNF93_MA1721.2 14 bp overlap
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