chr1 : 100,459,164 100,459,481
317 bp 73 TFs 0 linked genes
This 317 bp open chromatin element has no linked target genes and is bound by 73 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr1:100,454,164 – 100,464,481
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
73 transcription factors
Source
Cell type
AR 2 datasets
ChIP LNCaP-clone-FGC_DHT-DMSO GSE118247.AR.LNCaP-clone-FGC_DHT-DMSO 181 bp overlap
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 96 bp overlap
ATF7 1 dataset
ChIP GM12878 ENCSR014YCR.ATF7.GM12878 84 bp overlap
BAP1 1 dataset
ChIP NCI-H1963_shNONT GSE145028.BAP1.NCI-H1963_shNONT 113 bp overlap
BRD2 2 datasets
ChIP MDA-MB-231_JQ1 GSE116879.BRD2.MDA-MB-231_JQ1 151 bp overlap
ChIP MDA-MB-231_JQ1_rDNA GSE116879.BRD2.MDA-MB-231_JQ1_rDNA 151 bp overlap
BRD4 3 datasets
ChIP HAP1 GSE108387.BRD4.HAP1 278 bp overlap
ChIP HT29 GSE73319.BRD4.HT29 140 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 194 bp overlap
CTCF 90 datasets
ChIP 22Rv1 ENCFF466OXN 130 bp overlap
ChIP 22Rv1 ENCSR857PBV.CTCF.22Rv1 239 bp overlap
ChIP 22Rv1_hydroxy_10nM_4h ENCSR847XGE.CTCF.22Rv1_hydroxy_10nM_4h 166 bp overlap
ChIP A-549 ENCSR000AUF.CTCF.A-549 149 bp overlap
ChIP B-cell ENCSR000AUV.CTCF.B-cell 317 bp overlap
ChIP C4-2B ENCFF821XVN 306 bp overlap
ChIP CD14 ENCSR000ATN.CTCF.CD14 198 bp overlap
ChIP CD8-positive, alpha-beta T cell ENCFF092PSD 121 bp overlap
ChIP DOHH2 ENCSR084RDK.CTCF.DOHH2 138 bp overlap
ChIP GM04604 GSE148179.CTCF.GM04604 189 bp overlap
ChIP GM04648 GSE148179.CTCF.GM04648 120 bp overlap
ChIP GM06077 GSE148179.CTCF.GM06077 54 bp overlap
ChIP GM12878 GSE76922.CTCF.GM12878 97 bp overlap
ChIP GM17942 GSE76922.CTCF.GM17942 51 bp overlap
ChIP GM23338 ENCFF832KWE 75 bp overlap
ChIP HCT-116 GSE131606.CTCF.HCT-116 256 bp overlap
ChIP HCT-116_RAD21-mAC_500uM_auxin GSE104888.CTCF.HCT-116_RAD21-mAC_500uM_auxin 188 bp overlap
ChIP HFFc6 ENCFF005CJI 83 bp overlap
ChIP HT-1080 GSE135580.CTCF.HT-1080 236 bp overlap
ChIP ID00014 GSE76922.CTCF.ID00014 72 bp overlap
ChIP ID00016 GSE76922.CTCF.ID00016 75 bp overlap
ChIP K-562 GSE92879.CTCF.K-562 95 bp overlap
ChIP K-562_MonoC GSE137216.CTCF.K-562_MonoC 125 bp overlap
ChIP LNCaP-C4-2B ENCSR460LGH.CTCF.LNCaP-C4-2B 180 bp overlap
ChIP Loucy ENCSR464DKE.CTCF.Loucy 65 bp overlap
ChIP MDA-MB-157 GSE116868.CTCF.MDA-MB-157 84 bp overlap
ChIP NCI-H929 ENCSR634OAQ.CTCF.NCI-H929 126 bp overlap
ChIP OCI-Ly1 ENCSR072EUE.CTCF.OCI-Ly1 68 bp overlap
ChIP OCI-Ly7 ENCSR027HML.CTCF.OCI-Ly7 64 bp overlap
ChIP PANC-1 ENCSR203QEB.CTCF.PANC-1 74 bp overlap
ChIP PC-3 ENCSR359LOD.CTCF.PC-3 150 bp overlap
ChIP PC-9 ENCFF539ULB 66 bp overlap
ChIP Panc1 ENCFF056JQX 242 bp overlap
ChIP RH4 GSE83726.CTCF.RH4 195 bp overlap
ChIP RWPE-1 ENCSR303GFI.CTCF.RWPE-1 76 bp overlap
ChIP RWPE-2 ENCSR856JJB.CTCF.RWPE-2 263 bp overlap
ChIP RWPE1 ENCFF200GQF 81 bp overlap
ChIP RWPE1 ENCFF200GQF 81 bp overlap
ChIP RWPE2 ENCFF911IEE 262 bp overlap
ChIP SK-N-SH ENCSR541AMF.CTCF.SK-N-SH 78 bp overlap
ChIP SLK_CTCF-KD GSE138105.CTCF.SLK_CTCF-KD 78 bp overlap
ChIP SLK_Ctrl GSE138105.CTCF.SLK_Ctrl 89 bp overlap
ChIP SLK_RAD21-KD GSE138105.CTCF.SLK_RAD21-KD 60 bp overlap
ChIP T-cell GSE115893.CTCF.T-cell 102 bp overlap
ChIP THP-1_PMA_Dex-6h GSE103477.CTCF.THP-1_PMA_Dex-6h 55 bp overlap
ChIP THP-1_Pam3csk-025m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-025m-Flavo-000m 183 bp overlap
ChIP THP-1_Pam3csk-120m-Flavo-000m GSE103477.CTCF.THP-1_Pam3csk-120m-Flavo-000m 64 bp overlap
ChIP THP-1_Pam3csk-180m-Flavo-060m GSE103477.CTCF.THP-1_Pam3csk-180m-Flavo-060m 63 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.CTCF.THP-1_Pam3csk-360m-Flavo-240m 105 bp overlap
ChIP THP-1_siCtrl-eGFP-Pam3csk-4h GSE103477.CTCF.THP-1_siCtrl-eGFP-Pam3csk-4h 53 bp overlap
ChIP VCaP ENCFF858YQT 118 bp overlap
ChIP VCaP ENCSR265ARE.CTCF.VCaP 74 bp overlap
ChIP activated CD8-positive, alpha-beta T cell ENCFF006MHW 103 bp overlap
ChIP brain ENCFF163BBN 117 bp overlap
ChIP brain ENCFF163BBN 117 bp overlap
ChIP chondrocyte ENCFF134ORZ 210 bp overlap
ChIP colon_sigmoid ENCSR721AHD.CTCF.colon_sigmoid 277 bp overlap
ChIP colon_transverse ENCSR236YGF.CTCF.colon_transverse 120 bp overlap
ChIP colon_transverse ENCSR769WKR.CTCF.colon_transverse 110 bp overlap
ChIP colon_transverse ENCSR102CSD.CTCF.colon_transverse 61 bp overlap
ChIP cortical-interneuron_KCl-neg_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-neg_JQ1-pos 111 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-neg GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-neg 57 bp overlap
ChIP cortical-interneuron_KCl-pos_JQ1-pos GSE117508.CTCF.cortical-interneuron_KCl-pos_JQ1-pos 216 bp overlap
ChIP epithelial cell of prostate ENCFF086GTI 187 bp overlap
ChIP esophagus_muscularis-mucosa ENCSR559KAB.CTCF.esophagus_muscularis-mucosa 62 bp overlap
ChIP esophagus_squamous-epithelium ENCSR003SZZ.CTCF.esophagus_squamous-epithelium 193 bp overlap
ChIP esophagus_squamous-epithelium ENCSR838RUX.CTCF.esophagus_squamous-epithelium 177 bp overlap
ChIP gastrocnemius-medialis ENCSR428BKN.CTCF.gastrocnemius-medialis 62 bp overlap
ChIP gastroesophageal-sphincter ENCSR146BGM.CTCF.gastroesophageal-sphincter 87 bp overlap
ChIP gastroesophageal-sphincter ENCSR206ETG.CTCF.gastroesophageal-sphincter 58 bp overlap
ChIP glutamatergic neuron ENCFF816BTR 86 bp overlap
ChIP hESC_D15 GSE116862.CTCF.hESC_D15 167 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 304 bp overlap
ChIP hESC_D80 GSE116862.CTCF.hESC_D80 86 bp overlap
ChIP hiPSC GSE115407.CTCF.hiPSC 67 bp overlap
ChIP lymphoblast GSE155324.CTCF.lymphoblast 58 bp overlap
ChIP lymphoblast_mut GSE155324.CTCF.lymphoblast_mut 263 bp overlap
ChIP neural ENCSR822CEA.CTCF.neural 84 bp overlap
ChIP neural cell ENCFF335ADI 79 bp overlap
ChIP osteoblast ENCSR000APF.CTCF.osteoblast 186 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.CTCF.peripheral-blood-neutrophil_PMA-1 122 bp overlap
ChIP peripheral-blood-neutrophil_US-1 GSE126755.CTCF.peripheral-blood-neutrophil_US-1 121 bp overlap
ChIP primary-glioblastoma_G523 GSE121601.CTCF.primary-glioblastoma_G523 111 bp overlap
ChIP primary-glioblastoma_G567 GSE121601.CTCF.primary-glioblastoma_G567 215 bp overlap
ChIP primary-glioblastoma_G583 GSE121601.CTCF.primary-glioblastoma_G583 68 bp overlap
ChIP prostate_epithelial ENCSR196HOM.CTCF.prostate_epithelial 128 bp overlap
ChIP prostate_gland ENCSR720USO.CTCF.prostate_gland 55 bp overlap
ChIP retina_AB1-FW14 GSE86981.CTCF.retina_AB1-FW14 104 bp overlap
ChIP retina_Hu25 GSE137311.CTCF.retina_Hu25 58 bp overlap
ChIP smooth-muscle-cell ENCSR261VAS.CTCF.smooth-muscle-cell 158 bp overlap
DDX5 1 dataset
ChIP NTERA2 GSE58641.DDX5.NTERA2 200 bp overlap
E2F8 1 dataset
ChIP GM12878 ENCSR793HVL.E2F8.GM12878 60 bp overlap
FEZF1 3 datasets
ChIP HEK293 ENCFF528YED 113 bp overlap
ChIP HEK293 ENCSR827NWO.FEZF1.HEK293 317 bp overlap
ChIP HEK293 GSE76494.FEZF1.HEK293 197 bp overlap
FOXA1 3 datasets
ChIP breast-cancer_Veh-2856 GSE128018.FOXA1.breast-cancer_Veh-2856 204 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 174 bp overlap
ChIP primary-prostate-cancer_P2_DSG GSE114737.FOXA1.primary-prostate-cancer_P2_DSG 64 bp overlap
FOXM1 1 dataset
ChIP GM12878 ENCFF264DJE 317 bp overlap
GATA4 1 dataset
ChIP Hep-G2 GSE135714.GATA4.Hep-G2 199 bp overlap
GATAD2A 1 dataset
ChIP K562 ENCFF071LJW 96 bp overlap
HDAC2 1 dataset
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 204 bp overlap
HMGXB4 1 dataset
ChIP HepG2 ENCFF179TAD 59 bp overlap
HOXC6 1 dataset
ChIP 22Rv1 GSE129951.HOXC6.22Rv1 147 bp overlap
IKZF3 1 dataset
ChIP HEK293 ENCFF518OXG 317 bp overlap
KDM2A 1 dataset
ChIP HepG2 ENCFF491GTR 59 bp overlap
KLF8 2 datasets
ChIP HEK293 ENCFF929IAJ 159 bp overlap
ChIP HEK293 ENCSR635NOQ.KLF8.HEK293 73 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 212 bp overlap
MAFG 1 dataset
ChIP K-562 ENCSR818DQV.MAFG.K-562 65 bp overlap
MAX 1 dataset
ChIP Ishikawa ENCFF064TDQ 55 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 208 bp overlap
MYCN 2 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 174 bp overlap
ChIP LNCaP_EtOH GSE117304.MYCN.LNCaP_EtOH 91 bp overlap
MZF1 1 dataset
ChIP HEK293 ENCSR298QUH.MZF1.HEK293 317 bp overlap
PHF19 1 dataset
ChIP DU145_CTR GSE135623.PHF19.DU145_CTR 187 bp overlap
PITX1 1 dataset
ChIP HepG2 ENCFF468QTQ 54 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 259 bp overlap
POLR2A 1 dataset
ChIP IMR-90 ENCFF672YWV 105 bp overlap
PRDM6 2 datasets
ChIP HEK293 ENCFF283AJL 181 bp overlap
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 79 bp overlap
RAD21 31 datasets
ChIP GP5D GSE51234.RAD21.GP5D 190 bp overlap
ChIP GP5D_SIRAD21 GSE51234.RAD21.GP5D_SIRAD21 63 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 65 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 52 bp overlap
ChIP HCT-116 GSE131606.RAD21.HCT-116 317 bp overlap
ChIP HCT-116 GSE121355.RAD21.HCT-116 119 bp overlap
ChIP HCT-116_RAD21-mAC GSE104888.RAD21.HCT-116_RAD21-mAC 262 bp overlap
ChIP HEK293_siCtrl GSE130135.RAD21.HEK293_siCtrl 317 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 317 bp overlap
ChIP HEK293_siE1A-TAZ GSE130135.RAD21.HEK293_siE1A-TAZ 165 bp overlap
ChIP HEK293_siYAP GSE130135.RAD21.HEK293_siYAP 317 bp overlap
ChIP HeLa-S3_CTCF-s-OE GSE108869.RAD21.HeLa-S3_CTCF-s-OE 172 bp overlap
ChIP HeLa-Tet-On GSE112028.RAD21.HeLa-Tet-On 83 bp overlap
ChIP MDM GSE103477.RAD21.MDM 53 bp overlap
ChIP MDM_IFNb GSE103477.RAD21.MDM_IFNb 68 bp overlap
ChIP SLK_CTCF-KD GSE138105.RAD21.SLK_CTCF-KD 125 bp overlap
ChIP SLK_Ctrl GSE138105.RAD21.SLK_Ctrl 110 bp overlap
ChIP SLK_RAD21-KD GSE138105.RAD21.SLK_RAD21-KD 63 bp overlap
ChIP THP-1_PMA_Dex-0h GSE103477.RAD21.THP-1_PMA_Dex-0h 87 bp overlap
ChIP THP-1_PMA_Dex-6h GSE103477.RAD21.THP-1_PMA_Dex-6h 134 bp overlap
ChIP THP-1_PMA_IFNb-6h GSE103477.RAD21.THP-1_PMA_IFNb-6h 92 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-000m 185 bp overlap
ChIP THP-1_Pam3csk-000m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-000m-Flavo-240m 51 bp overlap
ChIP THP-1_Pam3csk-020m-Flavo-000m GSE103477.RAD21.THP-1_Pam3csk-020m-Flavo-000m 65 bp overlap
ChIP THP-1_Pam3csk-150m-Flavo-030m GSE103477.RAD21.THP-1_Pam3csk-150m-Flavo-030m 163 bp overlap
ChIP THP-1_Pam3csk-360m-Flavo-240m GSE103477.RAD21.THP-1_Pam3csk-360m-Flavo-240m 221 bp overlap
ChIP lymphoblast GSE155324.RAD21.lymphoblast 162 bp overlap
ChIP lymphoblast_mut GSE155324.RAD21.lymphoblast_mut 249 bp overlap
ChIP neural ENCSR198ZYJ.RAD21.neural 61 bp overlap
ChIP neural cell ENCFF564MOT 67 bp overlap
ChIP peripheral-blood-neutrophil_PMA-1 GSE126755.RAD21.peripheral-blood-neutrophil_PMA-1 208 bp overlap
RBBP4 1 dataset
ChIP SCMC GSE155861.RBBP4.SCMC 95 bp overlap
RELB 1 dataset
ChIP GM12878 ENCSR387QUV.RELB.GM12878 68 bp overlap
SATB1 2 datasets
ChIP MCF-10A_N-term_CUT1 GSE123292.SATB1.MCF-10A_N-term_CUT1 161 bp overlap
ChIP MCF-10A_dHD GSE123292.SATB1.MCF-10A_dHD 266 bp overlap
SMARCA4 4 datasets
ChIP 501-mel_SHCTR GSE61965.SMARCA4.501-mel_SHCTR 135 bp overlap
ChIP 501-mel_SHSOX10 GSE61965.SMARCA4.501-mel_SHSOX10 150 bp overlap
ChIP NGP_ARID1A-mut2 GSE134626.SMARCA4.NGP_ARID1A-mut2 108 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 141 bp overlap
SMC1 2 datasets
ChIP DKO GSE131606.SMC1.DKO 237 bp overlap
ChIP HCAEC GSE101921.SMC1.HCAEC 191 bp overlap
SMC1A 1 dataset
ChIP primary-epidermal-keratinocyte_diff_d6 GSE84657.SMC1A.primary-epidermal-keratinocyte_diff_d6 146 bp overlap
SMC3 7 datasets
ChIP GP5D GSE51234.SMC3.GP5D 189 bp overlap
ChIP GP5D_SIRAD21 GSE51234.SMC3.GP5D_SIRAD21 69 bp overlap
ChIP HeLa-Kyoto_WAPL_PDS-depleted GSE102884.SMC3.HeLa-Kyoto_WAPL_PDS-depleted 123 bp overlap
ChIP neural ENCSR404BPV.SMC3.neural 202 bp overlap
ChIP neural cell ENCFF795YGY 61 bp overlap
ChIP neural cell ENCFF795YGY 61 bp overlap
ChIP peripheral-blood-neutrophil_Ecoli-1 GSE126755.SMC3.peripheral-blood-neutrophil_Ecoli-1 85 bp overlap
SP7 1 dataset
ChIP HEK293 ENCSR468IJT.SP7.HEK293 59 bp overlap
STAG1 3 datasets
ChIP HeLa GSE126990.STAG1.HeLa 79 bp overlap
ChIP HeLa-Kyoto GSE138405.STAG1.HeLa-Kyoto 79 bp overlap
ChIP Hep-G2 ENCSR167MTG.STAG1.Hep-G2 165 bp overlap
STAG2 2 datasets
ChIP HL-60 GSE131577.STAG2.HL-60 91 bp overlap
ChIP OCI-AML-3 GSE111537.STAG2.OCI-AML-3 241 bp overlap
TRIM28 1 dataset
ChIP HEK293 ENCFF582MWI 245 bp overlap
YY1 1 dataset
ChIP Hep-G2_RBM25-KD GSE120104.YY1.Hep-G2_RBM25-KD 317 bp overlap
ZBTB17 1 dataset
ChIP HEK293 ENCFF865LIO 163 bp overlap
ZBTB20 2 datasets
ChIP HEK293 ENCFF524ADK 317 bp overlap
ChIP HEK293 ENCSR460MBI.ZBTB20.HEK293 110 bp overlap
ZBTB8A 2 datasets
ChIP HEK293 ENCFF303WRD 281 bp overlap
ChIP HEK293 ENCSR481FEC.ZBTB8A.HEK293 118 bp overlap
ZEB2 2 datasets
ChIP HEK293 ENCFF847JIE 149 bp overlap
ChIP HEK293 ENCSR417VWF.ZEB2.HEK293 93 bp overlap
ZFP37 2 datasets
ChIP HEK293 ENCFF968PWB 202 bp overlap
ChIP HEK293 ENCSR365GRX.ZFP37.HEK293 72 bp overlap
ZIC2 1 dataset
ChIP HEK293 ENCFF033NQQ 310 bp overlap
ZNF10 3 datasets
ChIP HEK293 ENCFF611ZJI 224 bp overlap
ChIP HEK293 ENCFF611ZJI 100 bp overlap
ChIP HEK293 ENCSR019WUS.ZNF10.HEK293 317 bp overlap
ZNF134 1 dataset
ChIP HEK293 GSE76494.ZNF134.HEK293 176 bp overlap
ZNF189 2 datasets
ChIP HEK293 ENCFF638TIB 293 bp overlap
ChIP HEK293 ENCSR163RYW.ZNF189.HEK293 217 bp overlap
ZNF2 2 datasets
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 111 bp overlap
ChIP HEK293 ENCSR011CKE.ZNF2.HEK293 75 bp overlap
ZNF319 2 datasets
ChIP K-562 ENCSR231PDA.ZNF319.K-562 106 bp overlap
ChIP K562 ENCFF561ZSB 139 bp overlap
ZNF335 3 datasets
ChIP HEK293 ENCFF784SLD 234 bp overlap
ChIP HEK293 ENCFF784SLD 234 bp overlap
ChIP HEK293 ENCSR328SUD.ZNF335.HEK293 317 bp overlap
ZNF34 2 datasets
ChIP HEK293 ENCFF481TFV 124 bp overlap
ChIP HEK293 ENCSR727PIC.ZNF34.HEK293 70 bp overlap
ZNF366 2 datasets
ChIP HEK293 ENCFF799ATK 205 bp overlap
ChIP HEK293 ENCSR106EBH.ZNF366.HEK293 295 bp overlap
ZNF660 2 datasets
ChIP HEK293 ENCFF282RUS 180 bp overlap
ChIP HEK293 ENCSR283DOU.ZNF660.HEK293 157 bp overlap
ZNF778 1 dataset
ChIP HEK293 GSE76494.ZNF778.HEK293 173 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 179 bp overlap
ZSCAN30 2 datasets
ChIP HEK293 ENCFF082YBI 292 bp overlap
ChIP HEK293 ENCSR768VNZ.ZSCAN30.HEK293 260 bp overlap
ZSCAN4 2 datasets
ChIP HEK293 ENCFF381BKT 162 bp overlap
ChIP HEK293 ENCSR211GNP.ZSCAN4.HEK293 317 bp overlap
ZXDB 1 dataset
ChIP HEK293 ENCSR559IOZ.ZXDB.HEK293 317 bp overlap