chr5 : 109,876,791 109,877,470
679 bp 87 TFs 0 linked genes
This 679 bp open chromatin element has no linked target genes and is bound by 87 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:109,871,791 – 109,882,470
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
87 transcription factors
Source
Cell type
ARID1A 3 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.ARID1A.MCF-7_4-hydroxytamoxifen 57 bp overlap
ChIP MCF-7_Fulvestrant GSE123284.ARID1A.MCF-7_Fulvestrant 89 bp overlap
ChIP endometrial-epithelial-cells GSE106660.ARID1A.endometrial-epithelial-cells 59 bp overlap
BRD2 2 datasets
ChIP MDA-MB-231_BAZ2AsiRNA GSE116879.BRD2.MDA-MB-231_BAZ2AsiRNA 52 bp overlap
ChIP MDA-MB-231_NTsiRNA_JQ1 GSE116879.BRD2.MDA-MB-231_NTsiRNA_JQ1 78 bp overlap
BRD4 8 datasets
ChIP HCC1395 GSE63581.BRD4.HCC1395 412 bp overlap
ChIP HCC1395_JQ1 GSE63581.BRD4.HCC1395_JQ1 162 bp overlap
ChIP MDA-MB-231_DMSO GSE116879.BRD4.MDA-MB-231_DMSO 68 bp overlap
ChIP MDA-MB-231_DMSO_rDNA GSE116879.BRD4.MDA-MB-231_DMSO_rDNA 68 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801 GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801 50 bp overlap
ChIP MDA-MB-231_JQ1_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_JQ1_MGSK2801_rDNA 50 bp overlap
ChIP MDA-MB-231_MGSK2801 GSE116879.BRD4.MDA-MB-231_MGSK2801 117 bp overlap
ChIP MDA-MB-231_MGSK2801_rDNA GSE116879.BRD4.MDA-MB-231_MGSK2801_rDNA 117 bp overlap
CBX2 2 datasets
ChIP K-562 ENCSR000ATU.CBX2.K-562 324 bp overlap
ChIP K-562 ENCSR000ATU.CBX2.K-562 193 bp overlap
CDKN1B 1 dataset
ChIP MDA-MB-231_p27CK-DD GSE112444.CDKN1B.MDA-MB-231_p27CK-DD 205 bp overlap
CREBBP 2 datasets
ChIP PC-3 GSE147455.CREBBP.PC-3 169 bp overlap
ChIP PC-3_GDC-resist GSE147455.CREBBP.PC-3_GDC-resist 216 bp overlap
CTCF 1 dataset
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 154 bp overlap
Cebpa 1 dataset
ChIP BLaER1 ENCFF031ISE 258 bp overlap
DUX4 2 datasets
ChIP HEK293 GSE75791.DUX4.HEK293 326 bp overlap
ChIP WA01 GSE94322.DUX4.WA01 367 bp overlap
E2F1 1 dataset
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 195 bp overlap
EBF1 1 dataset
Motif DE_12h DE_12h-EBF1_MA0154.5 11 bp overlap
ELF3 3 datasets
ChIP PDAC GSE64557.ELF3.PDAC 352 bp overlap
ChIP PDAC_KOKLF5 GSE64557.ELF3.PDAC_KOKLF5 384 bp overlap
ChIP PDAC_SHCTR GSE64557.ELF3.PDAC_SHCTR 507 bp overlap
EP300 4 datasets
ChIP PC-3 GSE147455.EP300.PC-3 146 bp overlap
ChIP SK-N-SH ENCFF451CNG 93 bp overlap
ChIP SK-N-SH ENCSR000BUA.EP300.SK-N-SH 87 bp overlap
ChIP tibial nerve ENCFF346AYA 192 bp overlap
ESR1 1 dataset
ChIP breast_tumor_Male_10 GSE104399.ESR1.breast_tumor_Male_10 159 bp overlap
ETV1 1 dataset
ChIP COLO-800 GSE80443.ETV1.COLO-800 154 bp overlap
Ebf4 1 dataset
Motif DE_12h DE_12h-Ebf4_MA2122.1 11 bp overlap
FOS 2 datasets
ChIP CFPAC-1 GSE119930.FOS.CFPAC-1 173 bp overlap
ChIP MCF-10A ENCSR000DON.FOS.MCF-10A 172 bp overlap
FOSL1 2 datasets
ChIP BT-549 GSE46166.FOSL1.BT-549 448 bp overlap
ChIP BT-549 GSE112961.FOSL1.BT-549 365 bp overlap
FOSL2 4 datasets
ChIP LPS141 GSE111253.FOSL2.LPS141 206 bp overlap
ChIP NPC_K755R-pos GSE122631.FOSL2.NPC_K755R-pos 115 bp overlap
ChIP NPC_R1159Q GSE122631.FOSL2.NPC_R1159Q 73 bp overlap
ChIP SK-N-SH ENCSR000BVB.FOSL2.SK-N-SH 100 bp overlap
FOXA1 5 datasets
ChIP CFPAC-1 GSE119930.FOXA1.CFPAC-1 78 bp overlap
ChIP CFPAC-1_FOXA2-KO GSE119930.FOXA1.CFPAC-1_FOXA2-KO 64 bp overlap
ChIP PDAC GSE64557.FOXA1.PDAC 206 bp overlap
ChIP PDAC_KOKLF5 GSE64557.FOXA1.PDAC_KOKLF5 189 bp overlap
ChIP PDAC_SHCTR GSE64557.FOXA1.PDAC_SHCTR 135 bp overlap
FOXA2 4 datasets
ChIP CFPAC-1_EV GSE119930.FOXA2.CFPAC-1_EV 79 bp overlap
ChIP CFPAC-1_HOXB8-OE GSE119930.FOXA2.CFPAC-1_HOXB8-OE 94 bp overlap
ChIP DE DE-FOXA2-1 383 bp overlap
ChIP DE DE-FOXA2-2 457 bp overlap
FOXM1 1 dataset
ChIP SK-N-SH ENCFF404RGX 117 bp overlap
FOXP2 1 dataset
ChIP PFSK1 ENCSR000BGA.FOXP2.PFSK1 101 bp overlap
GATA3 2 datasets
ChIP SK-N-SH ENCFF040SSB 97 bp overlap
ChIP breast_tumor_Male_21 GSE104399.GATA3.breast_tumor_Male_21 208 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 328 bp overlap
ChIP DE DE-GATA4-2 446 bp overlap
ChIP foregut GSE117136.GATA4.foregut 370 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 400 bp overlap
GATA6 4 datasets
ChIP DE DE-GATA6-1 340 bp overlap
ChIP DE DE-GATA6-2 434 bp overlap
ChIP foregut GSE117136.GATA6.foregut 316 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA6.pancreatic-progenitor 414 bp overlap
HDAC2 2 datasets
ChIP PC-3 GSE147455.HDAC2.PC-3 165 bp overlap
ChIP PC-3 GSE147455.HDAC2.PC-3 123 bp overlap
HIF1A 1 dataset
ChIP U2OS_DMOG GSE85096.HIF1A.U2OS_DMOG 118 bp overlap
HOXB8 1 dataset
ChIP CFPAC-1_HOXB8-OE GSE119930.HOXB8.CFPAC-1_HOXB8-OE 71 bp overlap
Hnf1A 1 dataset
Motif DE_12h DE_12h-Hnf1A_MA1991.2 10 bp overlap
IRF1 1 dataset
ChIP PDAC GSE64557.IRF1.PDAC 147 bp overlap
JUN 5 datasets
ChIP BT-549 GSE46166.JUN.BT-549 444 bp overlap
ChIP BT-549 GSE71976.JUN.BT-549 92 bp overlap
ChIP BT-549_TNF GSE71976.JUN.BT-549_TNF 262 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 550 bp overlap
ChIP MCF10A-Er-Src_EtOH GSE115597.JUN.MCF10A-Er-Src_EtOH 51 bp overlap
JUNB 1 dataset
ChIP CFPAC-1 GSE119930.JUNB.CFPAC-1 90 bp overlap
JUND 3 datasets
ChIP HCT116 ENCFF748ZQX 152 bp overlap
ChIP PC-3 GSE29808.JUND.PC-3 118 bp overlap
ChIP SK-N-SH ENCSR000BSK.JUND.SK-N-SH 50 bp overlap
KLF4 1 dataset
ChIP PDAC GSE64557.KLF4.PDAC 322 bp overlap
KLF6 1 dataset
ChIP PDAC GSE64557.KLF6.PDAC 77 bp overlap
MAFF 1 dataset
Motif DE_12h DE_12h-MAFF_MA0495.4 11 bp overlap
MCM5 1 dataset
ChIP K-562 ENCSR628APV.MCM5.K-562 216 bp overlap
MED1 3 datasets
ChIP U-87MG GSE36354.MED1.U-87MG 318 bp overlap
ChIP hMSC-TERT4_4h GSE104537.MED1.hMSC-TERT4_4h 316 bp overlap
ChIP hMSC-TERT4_adipocyte-4H GSE113253.MED1.hMSC-TERT4_adipocyte-4H 221 bp overlap
MEIS2 1 dataset
ChIP K-562 ENCSR851BNE.MEIS2.K-562 297 bp overlap
MYOD1 2 datasets
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 140 bp overlap
ChIP myoblast GSE50413.MYOD1.myoblast 142 bp overlap
Mafb 1 dataset
Motif DE_12h DE_12h-Mafb_MA0117.3 11 bp overlap
Mafg 1 dataset
Motif DE_12h DE_12h-Mafg_MA0659.4 12 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 157 bp overlap
NEUROD1 1 dataset
ChIP D283-Med GSE92582.NEUROD1.D283-Med 179 bp overlap
NFIC 1 dataset
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 123 bp overlap
NFKB1 1 dataset
ChIP MCF10A-Er-Src_TAM GSE115597.NFKB1.MCF10A-Er-Src_TAM 158 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 104 bp overlap
NR3C1 1 dataset
ChIP breast_tumor_Male_21 GSE104399.NR3C1.breast_tumor_Male_21 149 bp overlap
NRL 1 dataset
Motif DE_12h DE_12h-NRL_MA0842.3 12 bp overlap
ONECUT2 1 dataset
ChIP PC-3_normoxia GSE106305.ONECUT2.PC-3_normoxia 52 bp overlap
PATZ1 1 dataset
Motif DE_12h DE_12h-PATZ1_MA1961.2 11 bp overlap
PGR 3 datasets
ChIP AB32 GSE31129.PGR.AB32 98 bp overlap
ChIP breast_tumor_Male_28 GSE104399.PGR.breast_tumor_Male_28 107 bp overlap
ChIP breast_tumor_Male_30 GSE104399.PGR.breast_tumor_Male_30 143 bp overlap
PPARG 1 dataset
ChIP HUVEC-C_DMSO_HYPO GSE50144.PPARG.HUVEC-C_DMSO_HYPO 147 bp overlap
RCOR1 1 dataset
ChIP keratinocyte_diff GSE57702.RCOR1.keratinocyte_diff 103 bp overlap
RELA 4 datasets
ChIP aortic-endothelial-cell_IL1B_D14 GSE139377.RELA.aortic-endothelial-cell_IL1B_D14 53 bp overlap
ChIP aortic-endothelial-cell_IL1B_D21 GSE139377.RELA.aortic-endothelial-cell_IL1B_D21 67 bp overlap
ChIP aortic-endothelial-cell_IL1B_D39 GSE139377.RELA.aortic-endothelial-cell_IL1B_D39 121 bp overlap
ChIP aortic-endothelial-cell_IL1B_D6 GSE139377.RELA.aortic-endothelial-cell_IL1B_D6 60 bp overlap
SMAD2-3 2 datasets
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 270 bp overlap
ChIP HUVEC-C_TGFB1 GSE134556.SMAD2-3.HUVEC-C_TGFB1 261 bp overlap
SMAD3 5 datasets
ChIP HCC1954 GSE104760.SMAD3.HCC1954 50 bp overlap
ChIP HCC1954_TGFb GSE104760.SMAD3.HCC1954_TGFb 94 bp overlap
ChIP NCI-H441 GSE51509.SMAD3.NCI-H441 168 bp overlap
ChIP NCI-H441_SIITTF1 GSE51509.SMAD3.NCI-H441_SIITTF1 150 bp overlap
ChIP PC-3_hypoxia GSE106305.SMAD3.PC-3_hypoxia 93 bp overlap
SMARCA2 2 datasets
ChIP NPC_K755R-pos_ab GSE122631.SMARCA2.NPC_K755R-pos_ab 120 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 207 bp overlap
SMARCB1 3 datasets
ChIP MCF-7_4-hydroxytamoxifen GSE123284.SMARCB1.MCF-7_4-hydroxytamoxifen 53 bp overlap
ChIP proliferating-human-fibroblast_ASO_Ctrl GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_Ctrl 525 bp overlap
ChIP proliferating-human-fibroblast_ASO_LINC GSE131711.SMARCB1.proliferating-human-fibroblast_ASO_LINC 207 bp overlap
SNAI2 2 datasets
ChIP keratinocyte_LacZ GSE55421.SNAI2.keratinocyte_LacZ 195 bp overlap
ChIP keratinocyte_SHCTR GSE55421.SNAI2.keratinocyte_SHCTR 90 bp overlap
SP1 1 dataset
ChIP HCT116 ENCFF800LBN 142 bp overlap
SP5 1 dataset
Motif DE_12h DE_12h-SP5_MA1965.2 6 bp overlap
SP8 1 dataset
Motif DE_12h DE_12h-SP8_MA0747.2 11 bp overlap
SPI1 1 dataset
ChIP DC_LPS GSE123347.SPI1.DC_LPS 105 bp overlap
SS18 1 dataset
ChIP SYO-1_shSSX GSE108025.SS18.SYO-1_shSSX 121 bp overlap
SS18-SSX 1 dataset
ChIP fibroblast_23aa-SSX-Tail GSE139053.SS18-SSX.fibroblast_23aa-SSX-Tail 118 bp overlap
STAT3 9 datasets
ChIP FaDu_DMSO GSE78212.STAT3.FaDu_DMSO 75 bp overlap
ChIP HCC1143_EtOH GSE85579.STAT3.HCC1143_EtOH 98 bp overlap
ChIP HCC1187 GSE152203.STAT3.HCC1187 360 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 283 bp overlap
ChIP MCF-7_jc5840 GSE126004.STAT3.MCF-7_jc5840 53 bp overlap
ChIP MCF-7_jc5848 GSE126004.STAT3.MCF-7_jc5848 89 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 238 bp overlap
ChIP MDA-MB-231_EtOH GSE85579.STAT3.MDA-MB-231_EtOH 96 bp overlap
ChIP SUM159PT GSE152203.STAT3.SUM159PT 69 bp overlap
TAL1 1 dataset
ChIP MOLT-3 GSE59657.TAL1.MOLT-3 231 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 65 bp overlap
TCF7L1 1 dataset
Motif DE_12h DE_12h-TCF7L1_MA1421.1 12 bp overlap
TEAD1 3 datasets
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 174 bp overlap
ChIP HUCCT1 GSE68296.TEAD1.HUCCT1 50 bp overlap
ChIP adipocyte GSE140782.TEAD1.adipocyte 335 bp overlap
TEAD4 1 dataset
ChIP hMSC-TERT4 GSE140782.TEAD4.hMSC-TERT4 548 bp overlap
ZBTB5 1 dataset
ChIP K-562 ENCSR389PWB.ZBTB5.K-562 275 bp overlap
ZFP57 1 dataset
ChIP hESC GSE115387.ZFP57.hESC 599 bp overlap
ZNF143 1 dataset
ChIP FLP76_T4 GSE39263.ZNF143.FLP76_T4 148 bp overlap
ZNF281 1 dataset
Motif DE_12h DE_12h-ZNF281_MA1630.3 10 bp overlap
ZNF283 1 dataset
ChIP HEK293T GSE78099.ZNF283.HEK293T 141 bp overlap
ZNF701 1 dataset
Motif DE_12h DE_12h-ZNF701_MA1987.2 17 bp overlap
ZNF75A 1 dataset
Motif DE_12h DE_12h-ZNF75A_MA2097.1 12 bp overlap