chr5 : 55,223,205 55,223,845
640 bp 79 TFs 2 linked genes
This 640 bp open chromatin element is linked to MCIDAS and CCNO and is bound by 79 transcription factors.
Linked Genes
2 genes
Gene Expression Dist. to TSS Distance Link type
MCIDAS 3.4 kb Proximal Proximity
CCNO 9.8 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr5:55,218,205 – 55,228,845
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
79 transcription factors
Source
Cell type
AATF 1 dataset
ChIP NALM-6 GSE93626.AATF.NALM-6 208 bp overlap
AGO1 2 datasets
ChIP K-562 ENCSR641BSL.AGO1.K-562 205 bp overlap
ChIP K-562 GSE120104.AGO1.K-562 192 bp overlap
AR 3 datasets
ChIP MDA-MB-453 ERP003503.AR.MDA-MB-453 189 bp overlap
ChIP MDA-MB-453_FOXA1 ERP003503.AR.MDA-MB-453_FOXA1 427 bp overlap
ChIP prostate_fetal-fibroblast GSE90772.AR.prostate_fetal-fibroblast 366 bp overlap
ARID4B 1 dataset
ChIP WTC11 ENCFF441HDK 415 bp overlap
ARNTL 1 dataset
ChIP NSC_hNP1 GSE134972.ARNTL.NSC_hNP1 243 bp overlap
ASH2L 1 dataset
ChIP WA01 ENCSR850KIP.ASH2L.WA01 640 bp overlap
BCOR 2 datasets
ChIP B-cell_GERMINAL_CENTER GSE43350.BCOR.B-cell_GERMINAL_CENTER 496 bp overlap
ChIP WA01_RNF2-R GSE104690.BCOR.WA01_RNF2-R 500 bp overlap
BRD1 1 dataset
ChIP HUES-64 GSE104059.BRD1.HUES-64 335 bp overlap
BRD4 4 datasets
ChIP CLL_patient2 GSE109411.BRD4.CLL_patient2 269 bp overlap
ChIP COLO-741 GSE73319.BRD4.COLO-741 242 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 224 bp overlap
ChIP retina_AB1-FW15 GSE86981.BRD4.retina_AB1-FW15 202 bp overlap
CBFB 1 dataset
ChIP ME-1 GSE46044.CBFB.ME-1 216 bp overlap
CBX4 1 dataset
ChIP hMSC GSE117084.CBX4.hMSC 308 bp overlap
CBX7 1 dataset
ChIP lymphocyte_DMSO GSE110139.CBX7.lymphocyte_DMSO 615 bp overlap
CBX8 1 dataset
ChIP H1 ENCFF095JHA 62 bp overlap
CHD1 2 datasets
ChIP WA01 ENCSR000AQK.CHD1.WA01 405 bp overlap
ChIP hMSC-TERT_osteoblast GSE89179.CHD1.hMSC-TERT_osteoblast 266 bp overlap
CTBP2 2 datasets
ChIP H1 ENCFF329MAX 489 bp overlap
ChIP WA01 ENCSR000EUO.CTBP2.WA01 586 bp overlap
CTCF 4 datasets
ChIP GM04604 GSE148179.CTCF.GM04604 157 bp overlap
ChIP SK-N-SH ENCSR000DXQ.CTCF.SK-N-SH 131 bp overlap
ChIP hESC_D5 GSE116862.CTCF.hESC_D5 485 bp overlap
ChIP neuron_bipolar_doxy_4d ENCSR619IUE.CTCF.neuron_bipolar_doxy_4d 136 bp overlap
E2F1 1 dataset
ChIP U-87MG_GBM GSE99171.E2F1.U-87MG_GBM 145 bp overlap
E2F6 5 datasets
ChIP H1 ENCFF785DWK 370 bp overlap
ChIP K-562 ENCSR000EWJ.E2F6.K-562 226 bp overlap
ChIP K-562 ENCSR000BLI.E2F6.K-562 168 bp overlap
ChIP K562 ENCFF136LTS 325 bp overlap
ChIP WA01 ENCSR000BSI.E2F6.WA01 583 bp overlap
EED 1 dataset
ChIP ProEs GSE59087.EED.ProEs 623 bp overlap
EP300 1 dataset
ChIP fibroblast_senescent GSE106146.EP300.fibroblast_senescent 144 bp overlap
ERG 1 dataset
ChIP ME-1 GSE46044.ERG.ME-1 227 bp overlap
EZH2 30 datasets
ChIP B cell ENCFF803EMO 409 bp overlap
ChIP DOHH2 ENCFF528GDC 231 bp overlap
ChIP GM23248 ENCFF404ZHM 72 bp overlap
ChIP GM23338 ENCFF613YON 640 bp overlap
ChIP GM23338 ENCFF886DXX 640 bp overlap
ChIP H1 ENCFF232NZA 640 bp overlap
ChIP HUVEC-C GSE109625.EZH2.HUVEC-C 640 bp overlap
ChIP HUVEC-C_VEGF_12h GSE109625.EZH2.HUVEC-C_VEGF_12h 622 bp overlap
ChIP HUVEC-C_VEGF_1h GSE109625.EZH2.HUVEC-C_VEGF_1h 640 bp overlap
ChIP HUVEC-C_VEGF_4h GSE109625.EZH2.HUVEC-C_VEGF_4h 640 bp overlap
ChIP KG-1_shPLZF GSE109619.EZH2.KG-1_shPLZF 635 bp overlap
ChIP RCH-ACV GSE135024.EZH2.RCH-ACV 620 bp overlap
ChIP SK-N-SH ENCFF657FZK 402 bp overlap
ChIP astrocyte ENCFF365JTP 640 bp overlap
ChIP endothelial cell of umbilical vein ENCFF539AKL 640 bp overlap
ChIP fibroblast of dermis ENCFF029VZK 338 bp overlap
ChIP fibroblast of lung ENCFF479BAW 263 bp overlap
ChIP fibroblast of lung ENCFF479BAW 501 bp overlap
ChIP fibroblast of lung ENCFF479BAW 301 bp overlap
ChIP hESC GSE113817.EZH2.hESC 627 bp overlap
ChIP hESC_KO GSE113817.EZH2.hESC_KO 555 bp overlap
ChIP hepatocyte ENCFF118DKH 140 bp overlap
ChIP hepatocyte ENCFF118DKH 340 bp overlap
ChIP hepatocyte ENCFF118DKH 247 bp overlap
ChIP hepatocyte ENCFF552DZB 640 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.EZH2.hiPSC_WTa_RNase-neg 530 bp overlap
ChIP myotube ENCSR000ASZ.EZH2.myotube 345 bp overlap
ChIP neural cell ENCFF610EPB 367 bp overlap
ChIP neural progenitor cell ENCFF018MKA 640 bp overlap
ChIP neural progenitor cell ENCFF472NFV 640 bp overlap
FIP1L1 1 dataset
ChIP K-562 GSE120104.FIP1L1.K-562 192 bp overlap
FLI1 1 dataset
ChIP TSU-1621MT GSE60477.FLI1.TSU-1621MT 202 bp overlap
FOXA2 1 dataset
ChIP BJ1-hTERT_FoxHnf1aCoExp GSE90454.FOXA2.BJ1-hTERT_FoxHnf1aCoExp 428 bp overlap
HDAC2 1 dataset
ChIP WA01 ENCSR000AVB.HDAC2.WA01 534 bp overlap
HMGXB4 2 datasets
ChIP WTC11 ENCFF962POR 531 bp overlap
ChIP WTC11 ENCFF962POR 527 bp overlap
HNRNPLL 2 datasets
ChIP Hep-G2 ENCSR804HMZ.HNRNPLL.Hep-G2 210 bp overlap
ChIP Hep-G2 GSE120104.HNRNPLL.Hep-G2 181 bp overlap
IRF4 1 dataset
ChIP T-cell GSE136853.IRF4.T-cell 580 bp overlap
JARID2 1 dataset
ChIP AMIPS6 GSE48516.JARID2.AMIPS6 640 bp overlap
JUN 5 datasets
ChIP DE_D1 S08-DE-d1-JUN-exp1 319 bp overlap
ChIP DE_D2 S02-DE-d2-JUN-exp1 300 bp overlap
ChIP ESC S24-ESC-d0-JUN-exp1 500 bp overlap
ChIP HUES-8 GSE109524.JUN.HUES-8 408 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.JUN.HUES-8_DE_ctrl 482 bp overlap
KAT7 2 datasets
ChIP WTC11 ENCFF581TPB 363 bp overlap
ChIP WTC11 ENCFF581TPB 163 bp overlap
KDM4A 2 datasets
ChIP H1 ENCFF078LED 538 bp overlap
ChIP WA01 ENCSR000AVC.KDM4A.WA01 589 bp overlap
KDM5B 1 dataset
ChIP WA01 ENCSR000AUR.KDM5B.WA01 125 bp overlap
KMT2A 1 dataset
ChIP RCH-ACV GSE83671.KMT2A.RCH-ACV 213 bp overlap
MAX 2 datasets
ChIP H1 ENCFF914VQY 217 bp overlap
ChIP WA01 ENCSR000EUP.MAX.WA01 138 bp overlap
MYCN 2 datasets
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 428 bp overlap
ChIP NB-1643 GSE138295.MYCN.NB-1643 598 bp overlap
MYOCD 1 dataset
ChIP A-549 GSE128921.MYOCD.A-549 322 bp overlap
MYOD1 1 dataset
ChIP IMR-90_GM GSE128527.MYOD1.IMR-90_GM 480 bp overlap
NANOG 3 datasets
ChIP HUES-8 GSE109524.NANOG.HUES-8 295 bp overlap
ChIP WA01 ERP004238.NANOG.WA01 208 bp overlap
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 209 bp overlap
OGG1 4 datasets
ChIP HEK293 GSE89017.OGG1.HEK293 467 bp overlap
ChIP HEK293_15min GSE89017.OGG1.HEK293_15min 401 bp overlap
ChIP HEK293_30_min GSE89017.OGG1.HEK293_30_min 329 bp overlap
ChIP HEK293_60_min GSE89017.OGG1.HEK293_60_min 398 bp overlap
PCGF2 1 dataset
ChIP fibroblast_OHT GSE55605.PCGF2.fibroblast_OHT 141 bp overlap
POU2F1 2 datasets
ChIP T-47D GSE148277.POU2F1.T-47D 243 bp overlap
ChIP T-47D_D538G GSE148277.POU2F1.T-47D_D538G 219 bp overlap
POU5F1 2 datasets
ChIP DE_D1 DED1-OCT4_Batch_II 558 bp overlap
ChIP WA01_3IL ERP004238.POU5F1.WA01_3IL 540 bp overlap
POU5F1_M 1 dataset
ChIP DE_D1 DED1-OCT4-M_Batch_II 250 bp overlap
PRDM14 1 dataset
ChIP NCCIT GSE71675.PRDM14.NCCIT 281 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 432 bp overlap
RBFOX2 2 datasets
ChIP K-562 ENCSR822LBD.RBFOX2.K-562 189 bp overlap
ChIP K-562 GSE120104.RBFOX2.K-562 185 bp overlap
RNF2 6 datasets
ChIP GM12878 ENCSR679FAB.RNF2.GM12878 311 bp overlap
ChIP H1 ENCFF239FFS 640 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 182 bp overlap
ChIP HUES-64 GSE104059.RNF2.HUES-64 313 bp overlap
ChIP NCCIT GSE71675.RNF2.NCCIT 564 bp overlap
ChIP SYO-1_shCt GSE139053.RNF2.SYO-1_shCt 262 bp overlap
RORC 2 datasets
ChIP HCC70 GSE126380.RORC.HCC70 433 bp overlap
ChIP HCC70_XY018 GSE126380.RORC.HCC70_XY018 586 bp overlap
RUNX1 2 datasets
ChIP AML_Blast GSE60130.RUNX1.AML_Blast 200 bp overlap
ChIP CD34 GSE64862.RUNX1.CD34 200 bp overlap
RXR 1 dataset
ChIP TSU-1621MT GSE60477.RXR.TSU-1621MT 198 bp overlap
SALL3 1 dataset
ChIP hiPSC GSE104863.SALL3.hiPSC 253 bp overlap
SIRT6 1 dataset
ChIP SK-MEL-239_L-C-B GSE102813.SIRT6.SK-MEL-239_L-C-B 417 bp overlap
SMAD2-3 4 datasets
ChIP HUES-8 GSE109524.SMAD2-3.HUES-8 461 bp overlap
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 406 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.SMAD2-3.HUES-8_DE_JNKi 306 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.SMAD2-3.HUES-8_DE_ctrl 605 bp overlap
SMAD2_3 3 datasets
ChIP DE_D1 S39-DE-d1-SMAD2_3-exp2 350 bp overlap
ChIP ESC S23-ESC-d0-SMAD2_3-exp1 309 bp overlap
ChIP ESC S33-ESC-d0-SMAD2_3-exp2 321 bp overlap
SMAD3 1 dataset
ChIP WTC11 ENCFF815YYQ 357 bp overlap
SMAD4 1 dataset
ChIP WTC11 ENCFF195KVB 371 bp overlap
SMARCC1 2 datasets
ChIP HS-SY-2 GSE108025.SMARCC1.HS-SY-2 511 bp overlap
ChIP hiPSC GSE124903.SMARCC1.hiPSC 230 bp overlap
SREBP2 2 datasets
ChIP HCC70 GSE126380.SREBP2.HCC70 506 bp overlap
ChIP HCC70_XY018 GSE126380.SREBP2.HCC70_XY018 469 bp overlap
STAT3 1 dataset
ChIP WA01 ERP004237.STAT3.WA01 241 bp overlap
SUZ12 9 datasets
ChIP Aska-SS GSE108025.SUZ12.Aska-SS 640 bp overlap
ChIP GM12878 ENCSR091BOQ.SUZ12.GM12878 640 bp overlap
ChIP H1 ENCFF507HGF 229 bp overlap
ChIP H1 ENCFF881NFR 640 bp overlap
ChIP K-562 ENCSR000AUC.SUZ12.K-562 369 bp overlap
ChIP NT2-D1 ENCSR000EXH.SUZ12.NT2-D1 640 bp overlap
ChIP ProEs GSE59087.SUZ12.ProEs 306 bp overlap
ChIP WA01 ENCSR000EUQ.SUZ12.WA01 563 bp overlap
ChIP hiPSC_WTa_RNase-neg GSE128135.SUZ12.hiPSC_WTa_RNase-neg 377 bp overlap
TBP 1 dataset
ChIP WA01 ENCSR000ECB.TBP.WA01 313 bp overlap
TCF12 1 dataset
ChIP H1 ENCFF203EBH 251 bp overlap
TCF3 1 dataset
ChIP GM12878 ENCSR000BQT.TCF3.GM12878 104 bp overlap
TRIM25 1 dataset
ChIP BT-549 GSE79588.TRIM25.BT-549 316 bp overlap
TRIM28 2 datasets
ChIP AF22 GSE84259.TRIM28.AF22 496 bp overlap
ChIP HCT-116 GSE72622.TRIM28.HCT-116 195 bp overlap
USF1 1 dataset
ChIP WTC11 ENCFF699QGS 409 bp overlap
WDR5 1 dataset
ChIP SMMC-7721 GSE126982.WDR5.SMMC-7721 454 bp overlap
YY1 1 dataset
ChIP WA01 ENCSR000BKD.YY1.WA01 170 bp overlap
ZBTB33 5 datasets
ChIP K-562 ENCSR876GXA.ZBTB33.K-562 498 bp overlap
ChIP K562 ENCFF427SDV 460 bp overlap
ChIP K562 ENCFF427SDV 349 bp overlap
ChIP K562 ENCFF875HLX 465 bp overlap
ChIP WTC11 ENCFF048CFR 391 bp overlap
ZBTB48 2 datasets
ChIP U2OS GSE96776.ZBTB48.U2OS 499 bp overlap
ChIP U2OS_ZBTB48-KO GSE96776.ZBTB48.U2OS_ZBTB48-KO 520 bp overlap
ZNF2 1 dataset
ChIP HEK293T GSE78099.ZNF2.HEK293T 227 bp overlap
ZNF205 1 dataset
ChIP HEK293T GSE78099.ZNF205.HEK293T 295 bp overlap
ZNF563 1 dataset
ChIP HEK293 GSE76494.ZNF563.HEK293 226 bp overlap
ZNF667 1 dataset
ChIP HEK293 GSE76494.ZNF667.HEK293 226 bp overlap