chr4 : 140,653,633 – 140,654,475
842 bp 104 TFs 1 linked gene
This 842 bp open chromatin element is linked to TNRC18P1 and is bound by 104 transcription factors.
Linked Genes
1 gene
Gene↕ Expression Dist. to TSS↑ Distance↕ Link type↕
TNRC18P1 8.1 kb Proximal Proximity
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:140,648,633 – 140,659,475
This element Other elements Gene links ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
104 transcription factors
Source
Cell type
ARNT 1 dataset
ChIP SK-MEL-28 GSE85352.ARNT.SK-MEL-28 420 bp overlap
ASH2L 3 datasets
ChIP H1 ENCFF399KAM 627 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 634 bp overlap
ChIP WA01 ENCSR850KIP.ASH2L.WA01 100 bp overlap
CDK8 3 datasets
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 88 bp overlap
ChIP myometrium_PT916 GSE128230.CDK8.myometrium_PT916 54 bp overlap
ChIP myometrium_PT967 GSE128230.CDK8.myometrium_PT967 98 bp overlap
CDK9 1 dataset
ChIP MM1-S_JQ1_500NM GSE42355.CDK9.MM1-S_JQ1_500NM 169 bp overlap
CEBPA 1 dataset
ChIP liver ERP002306.CEBPA.liver 198 bp overlap
CEBPB 1 dataset
ChIP HFOB_DIFF GSE82295.CEBPB.HFOB_DIFF 239 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 361 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 261 bp overlap
CHD7 2 datasets
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 203 bp overlap
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 56 bp overlap
CTCF 2 datasets
ChIP adrenal-gland ENCSR450BLH.CTCF.adrenal-gland 283 bp overlap
ChIP hiPSC_parental-line GSE106870.CTCF.hiPSC_parental-line 155 bp overlap
Cebpa 3 datasets
ChIP BLaER1 ENCFF274GAT 523 bp overlap
ChIP BLaER1 ENCFF460KDD 251 bp overlap
ChIP BLaER1 ENCFF798NMV 251 bp overlap
EBF3_P177L 1 dataset
ChIP SK-N-SH GSE90682.EBF3_P177L.SK-N-SH 331 bp overlap
EMSY 1 dataset
ChIP K562 ENCFF511ZZZ 322 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 377 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 304 bp overlap
ESR1 3 datasets
ChIP MCF-7_E2-40min-ERalpha GSE94023.ESR1.MCF-7_E2-40min-ERalpha 167 bp overlap
ChIP MCF-7_estradiol-DHT_4h GSE99626.ESR1.MCF-7_estradiol-DHT_4h 210 bp overlap
ChIP MDA-MB-134-VI_E2 GSE109103.ESR1.MDA-MB-134-VI_E2 205 bp overlap
ESR1_pS118 2 datasets
ChIP MCF-7_E2_sc GSE117569.ESR1_pS118.MCF-7_E2_sc 213 bp overlap
ChIP MCF-7_Veh_sc GSE117569.ESR1_pS118.MCF-7_Veh_sc 200 bp overlap
EZH2_phosphoT487 1 dataset
ChIP hepatocyte ENCSR341VYI.EZH2_phosphoT487.hepatocyte 269 bp overlap
FIGLA 1 dataset
Motif DE_60h DE_60h-FIGLA_MA0820.2 6 bp overlap
FOS 1 dataset
ChIP myometrium_PT967 GSE128230.FOS.myometrium_PT967 85 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 264 bp overlap
ChIP SK-N-SH ENCFF764OZD 356 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 276 bp overlap
ChIP dermal-fibroblast_alone GSE51025.GATA2.dermal-fibroblast_alone 185 bp overlap
GATA3 1 dataset
ChIP SK-N-SH ENCFF040SSB 352 bp overlap
GATA4 4 datasets
ChIP DE DE-GATA4-1 347 bp overlap
ChIP DE DE-GATA4-1 332 bp overlap
ChIP DE DE-GATA4-2 842 bp overlap
ChIP pancreatic-progenitor GSE117136.GATA4.pancreatic-progenitor 258 bp overlap
GATA6 10 datasets
ChIP DE DE-GATA6-1 842 bp overlap
ChIP DE DE-GATA6-2 842 bp overlap
ChIP DE_D1 S09-DE-d1-GATA6-exp1 387 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 256 bp overlap
ChIP DE_D1 S14-DE-d1-GATA6-exp1 289 bp overlap
ChIP DE_D1 S41-DE-d1-GATA6-exp2 283 bp overlap
ChIP DE_D2 S55-DE-d2-GATA6-exp2 795 bp overlap
ChIP HUES-8_DE_JNKi GSE109524.GATA6.HUES-8_DE_JNKi 347 bp overlap
ChIP HUES-8_DE_ctrl GSE109524.GATA6.HUES-8_DE_ctrl 128 bp overlap
ChIP foregut GSE117136.GATA6.foregut 279 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 428 bp overlap
HIC2 1 dataset
Motif DE_60h DE_60h-HIC2_MA0738.2 6 bp overlap
HNRNPK 1 dataset
ChIP HepG2 ENCFF493GNS 184 bp overlap
Hnf1A 1 dataset
Motif DE_60h DE_60h-Hnf1A_MA1991.2 10 bp overlap
IRF1 1 dataset
ChIP K-562_EPZ GSE129380.IRF1.K-562_EPZ 337 bp overlap
ISL1 1 dataset
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 236 bp overlap
Isl1 1 dataset
Motif DE_60h DE_60h-Isl1_MA1608.2 7 bp overlap
KDM1A 2 datasets
ChIP SH-SY5Y_B0_SHLSD18A GSE58258.KDM1A.SH-SY5Y_B0_SHLSD18A 163 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 394 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 346 bp overlap
MAFF 4 datasets
ChIP HeLa-S3 ENCSR140DSL.MAFF.HeLa-S3 138 bp overlap
ChIP HepG2 ENCFF452YUT 141 bp overlap
ChIP K-562 ENCSR000EGI.MAFF.K-562 207 bp overlap
ChIP K562 ENCFF071YKK 281 bp overlap
MAFG 2 datasets
ChIP K-562 ENCSR818DQV.MAFG.K-562 368 bp overlap
ChIP K562 ENCFF455EEO 229 bp overlap
MAFK 11 datasets
ChIP A549 ENCFF371EPR 159 bp overlap
ChIP GM12878 ENCFF605LFT 265 bp overlap
ChIP H1 ENCFF854XWE 285 bp overlap
ChIP Hep-G2 ENCSR000EDZ.MAFK.Hep-G2 258 bp overlap
ChIP HepG2 ENCFF743ZOF 154 bp overlap
ChIP HepG2 ENCFF767LDG 257 bp overlap
ChIP IMR-90 ENCFF336DHZ 193 bp overlap
ChIP K-562 ENCSR000EGX.MAFK.K-562 189 bp overlap
ChIP K562 ENCFF380WHM 281 bp overlap
ChIP MCF-7 ENCFF558JLG 361 bp overlap
ChIP WA01 ENCSR000EBS.MAFK.WA01 227 bp overlap
MED1 2 datasets
ChIP cardiomyocyte_5 GSE85628.MED1.cardiomyocyte_5 411 bp overlap
ChIP cardiomyocyte_7 GSE85628.MED1.cardiomyocyte_7 224 bp overlap
MED13 1 dataset
ChIP HepG2 ENCFF143ZBX 465 bp overlap
MEIS1 1 dataset
Motif DE_60h DE_60h-MEIS1_MA0498.3 5 bp overlap
MITF 1 dataset
ChIP melanocyte_BRAFV600E GSE50681.MITF.melanocyte_BRAFV600E 210 bp overlap
MXI1 1 dataset
ChIP SK-N-SH ENCFF746HVJ 375 bp overlap
MYB 1 dataset
Motif DE_60h DE_60h-MYB_MA0100.4 6 bp overlap
NANOG 1 dataset
ChIP HUES-8 GSE109524.NANOG.HUES-8 334 bp overlap
NFIB 1 dataset
Motif DE_60h DE_60h-NFIB_MA1643.2 17 bp overlap
NFIC 3 datasets
Motif DE_60h DE_60h-NFIC_MA1527.2 15 bp overlap
ChIP Ishikawa ENCFF029AAD 381 bp overlap
ChIP Ishikawa ENCSR000BUT.NFIC.Ishikawa 139 bp overlap
NFIC::TLX1 1 dataset
Motif DE_60h DE_60h-NFICTLX1_MA0119.1 14 bp overlap
NFIX 1 dataset
Motif DE_60h DE_60h-NFIX_MA1528.2 14 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 210 bp overlap
NR1D1 1 dataset
Motif DE_60h DE_60h-NR1D1_MA1531.2 14 bp overlap
NR2F2 2 datasets
ChIP liver ENCSR168SMX.NR2F2.liver 291 bp overlap
ChIP liver ENCSR338MMB.NR2F2.liver 175 bp overlap
NR4A1 1 dataset
Motif DE_60h DE_60h-NR4A1_MA1112.3 8 bp overlap
NR4A2 1 dataset
Motif DE_60h DE_60h-NR4A2_MA0160.3 8 bp overlap
PGR 2 datasets
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 378 bp overlap
ChIP myometrium_NP2 GSE137550.PGR.myometrium_NP2 308 bp overlap
PHOX2B 1 dataset
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 311 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 516 bp overlap
POLR2A 2 datasets
ChIP SK-N-MC ENCFF088IVG 195 bp overlap
ChIP spleen ENCFF044PYR 267 bp overlap
POU5F1 1 dataset
ChIP HUES-8 GSE109524.POU5F1.HUES-8 287 bp overlap
PRDM1 1 dataset
ChIP HEK293 ENCFF302TBP 413 bp overlap
PRDM9 1 dataset
Motif DE_60h DE_60h-PRDM9_MA1723.2 20 bp overlap
PSIP1 1 dataset
ChIP T-REx-293 GSE117155.PSIP1.T-REx-293 155 bp overlap
Pparg::Rxra 1 dataset
Motif DE_60h DE_60h-PpargRxra_MA0065.3 13 bp overlap
RAD21 2 datasets
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 179 bp overlap
ChIP liver ENCFF522JHE 401 bp overlap
RBBP5 1 dataset
ChIP WA01 ENCSR000AQC.RBBP5.WA01 240 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 365 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 371 bp overlap
REST 1 dataset
ChIP SK-N-SH ENCFF861MKH 245 bp overlap
RFX1 1 dataset
Motif DE_60h DE_60h-RFX1_MA0509.3 16 bp overlap
RFX2 1 dataset
Motif DE_60h DE_60h-RFX2_MA0600.3 14 bp overlap
RFX3 1 dataset
Motif DE_60h DE_60h-RFX3_MA0798.3 16 bp overlap
RFX5 1 dataset
Motif DE_60h DE_60h-RFX5_MA0510.3 14 bp overlap
Rfx6 1 dataset
Motif DE_60h DE_60h-Rfx6_MA1724.2 9 bp overlap
SMAD2-3 1 dataset
ChIP HUES-8_DE GSE109524.SMAD2-3.HUES-8_DE 450 bp overlap
SMAD2_3 2 datasets
ChIP DE_D2 S01-DE-d2-SMAD2_3-exp1 374 bp overlap
ChIP DE_D2 S53-DE-d2-SMAD2_3-exp2 544 bp overlap
SMARCA2 2 datasets
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 449 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 79 bp overlap
SMARCA4 3 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 402 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 334 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 231 bp overlap
SMARCC1 2 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 489 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 259 bp overlap
SOX10 1 dataset
Motif DE_60h DE_60h-SOX10_MA0442.3 6 bp overlap
SOX17_M 1 dataset
ChIP DE_D2 DED2-SOX17-M_Batch_II 631 bp overlap
SOX2 2 datasets
ChIP HNSC GSE69479.SOX2.HNSC 697 bp overlap
ChIP NPC GSE122631.SOX2.NPC 69 bp overlap
SOX4 1 dataset
Motif DE_60h DE_60h-SOX4_MA0867.3 8 bp overlap
SP1 1 dataset
ChIP liver ENCFF597LFJ 485 bp overlap
SRF 4 datasets
ChIP H1 ENCFF036PEF 83 bp overlap
ChIP Ishikawa ENCFF992QXM 280 bp overlap
ChIP Ishikawa ENCSR000BTD.SRF.Ishikawa 141 bp overlap
ChIP WA01 ENCSR000BIV.SRF.WA01 178 bp overlap
SUZ12 1 dataset
ChIP K-562 ENCSR000AUC.SUZ12.K-562 179 bp overlap
Sox11 1 dataset
Motif DE_60h DE_60h-Sox11_MA0869.3 8 bp overlap
Sox17 1 dataset
Motif DE_60h DE_60h-Sox17_MA0078.3 10 bp overlap
Sox5 1 dataset
Motif DE_60h DE_60h-Sox5_MA0087.3 8 bp overlap
Sox6 1 dataset
Motif DE_60h DE_60h-Sox6_MA0515.1 10 bp overlap
Sox7 1 dataset
Motif DE_60h DE_60h-Sox7_MA2095.1 10 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 115 bp overlap
TBX5 5 datasets
ChIP G296S GSE85628.TBX5.G296S 98 bp overlap
ChIP G296S_2 GSE85628.TBX5.G296S_2 98 bp overlap
ChIP cardiomyocyte GSE85628.TBX5.cardiomyocyte 434 bp overlap
ChIP cardiomyocyte_1 GSE85628.TBX5.cardiomyocyte_1 434 bp overlap
ChIP cardiomyocyte_7 GSE85628.TBX5.cardiomyocyte_7 187 bp overlap
TCF21 1 dataset
ChIP HCASMC GSE124011.TCF21.HCASMC 176 bp overlap
TCF4 1 dataset
ChIP SK-N-SH ENCFF270OWF 437 bp overlap
TEAD2 1 dataset
Motif DE_60h DE_60h-TEAD2_MA1121.2 7 bp overlap
TEAD3 1 dataset
Motif DE_60h DE_60h-TEAD3_MA0808.1 8 bp overlap
TEAD4 1 dataset
Motif DE_60h DE_60h-TEAD4_MA0809.3 8 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 364 bp overlap
TOX2 1 dataset
ChIP SK-N-SH ENCFF415OYE 297 bp overlap
TP53 3 datasets
ChIP GM06170 GSE55727.TP53.GM06170 177 bp overlap
ChIP H9 GSE142050.TP53.H9 74 bp overlap
ChIP MCF-7_nutlin GSE86164.TP53.MCF-7_nutlin 79 bp overlap
TWIST1 2 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 232 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 232 bp overlap
YY1 6 datasets
ChIP H1 ENCFF524BTL 337 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 180 bp overlap
ChIP WA01 ENCSR000BKD.YY1.WA01 263 bp overlap
ChIP liver ENCFF400MBC 547 bp overlap
ChIP liver ENCFF515BWJ 537 bp overlap
ChIP liver ENCSR994YLZ.YY1.liver 317 bp overlap
ZEB1 1 dataset
Motif DE_60h DE_60h-ZEB1_MA0103.4 6 bp overlap
ZIC1 1 dataset
Motif DE_60h DE_60h-ZIC1_MA0696.1 14 bp overlap
ZNF316 1 dataset
ChIP K562 ENCFF838QCD 241 bp overlap
ZNF317 2 datasets
ChIP HEK293 GSE76494.ZNF317.HEK293 207 bp overlap
ChIP WTC11 ENCFF537KXI 357 bp overlap
ZNF440 1 dataset
ChIP HEK293T GSE78099.ZNF440.HEK293T 223 bp overlap
ZNF462 1 dataset
ChIP GM23338 ENCSR334UWP.ZNF462.GM23338 195 bp overlap
ZNF823 1 dataset
ChIP HEK293T GSE78099.ZNF823.HEK293T 290 bp overlap
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