chr4 : 136,680,280 136,680,564
284 bp 92 TFs 0 linked genes
This 284 bp open chromatin element has no linked target genes and is bound by 92 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:136,675,280 – 136,685,564
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
92 transcription factors
Source
Cell type
AR 1 dataset
ChIP LAPC-4_R1881 GSE148358.AR.LAPC-4_R1881 242 bp overlap
ARID1A 2 datasets
ChIP HAP1 GSE108387.ARID1A.HAP1 256 bp overlap
ChIP NGP GSE134626.ARID1A.NGP 284 bp overlap
BCL6B 1 dataset
Motif DE_12h DE_12h-BCL6B_MA0731.1 17 bp overlap
BNC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 249 bp overlap
BRD4 9 datasets
ChIP BE2C GSE80151.BRD4.BE2C 190 bp overlap
ChIP HCC1395 GSE63581.BRD4.HCC1395 235 bp overlap
ChIP Kelly_resistant GSE103030.BRD4.Kelly_resistant 275 bp overlap
ChIP Kelly_sensitive GSE103030.BRD4.Kelly_sensitive 284 bp overlap
ChIP RH4_shCHD4 GSE140115.BRD4.RH4_shCHD4 195 bp overlap
ChIP RH4_shscr GSE140115.BRD4.RH4_shscr 230 bp overlap
ChIP SK-N-BE2-C GSE80151.BRD4.SK-N-BE2-C 190 bp overlap
ChIP SK-N-BE2-C_Naive-veh GSE107706.BRD4.SK-N-BE2-C_Naive-veh 284 bp overlap
ChIP SK-N-BE2-C_Resistant-veh GSE107706.BRD4.SK-N-BE2-C_Resistant-veh 277 bp overlap
CDK9 1 dataset
ChIP Kelly_CYC065 GSE107126.CDK9.Kelly_CYC065 234 bp overlap
CHD2 2 datasets
ChIP SK-N-SH ENCFF669KMB 277 bp overlap
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 254 bp overlap
CHD4 2 datasets
ChIP RH5 GSE155861.CHD4.RH5 284 bp overlap
ChIP SCMC GSE155861.CHD4.SCMC 284 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_neural-crest-cell GSE108506.CHD7.hiPSC_derived_neural-crest-cell 213 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR474KBG.CSDC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 96 bp overlap
CTCF 4 datasets
ChIP BE2C ENCSR000DQD.CTCF.BE2C 137 bp overlap
ChIP HAP1_WT GSE126634.CTCF.HAP1_WT 185 bp overlap
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 263 bp overlap
ChIP HAP1_clone21_TSS-CRISPR GSE152721.CTCF.HAP1_clone21_TSS-CRISPR 154 bp overlap
CTCFL 1 dataset
ChIP Kelly_resistant GSE103030.CTCFL.Kelly_resistant 215 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCFF829RWA 151 bp overlap
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 284 bp overlap
FLI1 4 datasets
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 217 bp overlap
ChIP A-673_2_KRAB_eSOX2_1 GSE106914.FLI1.A-673_2_KRAB_eSOX2_1 156 bp overlap
ChIP A-673_D14 GSE129155.FLI1.A-673_D14 231 bp overlap
ChIP A-673_D17 GSE129155.FLI1.A-673_D17 284 bp overlap
FOXA1 5 datasets
ChIP ZR-75-1_vehicle_ab2 GSE112969.FOXA1.ZR-75-1_vehicle_ab2 177 bp overlap
ChIP ZR751 GSE72249.FOXA1.ZR751 110 bp overlap
ChIP ZR751_DEX GSE72249.FOXA1.ZR751_DEX 90 bp overlap
ChIP ZR751_E2 GSE72249.FOXA1.ZR751_E2 84 bp overlap
ChIP ZR751_E2_TAM ERP000380.FOXA1.ZR751_E2_TAM 147 bp overlap
FOXJ3 2 datasets
ChIP SK-N-SH ENCFF124KVL 284 bp overlap
ChIP SK-N-SH ENCFF124KVL 137 bp overlap
GATA2 4 datasets
ChIP SH-SY5Y ENCFF485YIB 284 bp overlap
ChIP SH-SY5Y ENCSR000EYB.GATA2.SH-SY5Y 264 bp overlap
ChIP SK-N-SH ENCFF764OZD 252 bp overlap
ChIP SK-N-SH ENCSR706VOO.GATA2.SK-N-SH 196 bp overlap
GATA3 9 datasets
ChIP BE2C GSE65664.GATA3.BE2C 183 bp overlap
ChIP CLB-Ga GSE90683.GATA3.CLB-Ga 116 bp overlap
ChIP Kelly GSE94822.GATA3.Kelly 284 bp overlap
ChIP Kelly GSE65664.GATA3.Kelly 215 bp overlap
ChIP SH-SY5Y ENCFF475HYF 214 bp overlap
ChIP SH-SY5Y ENCSR000EXZ.GATA3.SH-SY5Y 143 bp overlap
ChIP SH-SY5Y GSE65664.GATA3.SH-SY5Y 131 bp overlap
ChIP SK-N-BE2-C GSE94822.GATA3.SK-N-BE2-C 191 bp overlap
ChIP SK-N-SH ENCFF040SSB 191 bp overlap
GLIS3 2 datasets
ChIP SK-N-SH ENCFF370MHZ 164 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR507BWM.GLIS3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 73 bp overlap
HAND2 3 datasets
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 284 bp overlap
ChIP Kelly GSE94822.HAND2.Kelly 284 bp overlap
ChIP SK-N-BE2-C GSE94822.HAND2.SK-N-BE2-C 284 bp overlap
HDAC2 2 datasets
ChIP RH4_DMSO-6H GSE116344.HDAC2.RH4_DMSO-6H 278 bp overlap
ChIP RH4_Entinostat-6H GSE116344.HDAC2.RH4_Entinostat-6H 259 bp overlap
HDAC3 1 dataset
ChIP RH4_DMSO-6H GSE116344.HDAC3.RH4_DMSO-6H 193 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 284 bp overlap
ChIP SK-N-SH ENCFF285GEQ 135 bp overlap
KDM1A 2 datasets
ChIP SH-SY5Y_B0 GSE58258.KDM1A.SH-SY5Y_B0 198 bp overlap
ChIP SH-SY5Y_B3 GSE58258.KDM1A.SH-SY5Y_B3 275 bp overlap
MAML3 2 datasets
ChIP SK-N-SH GSE69119.MAML3.SK-N-SH 284 bp overlap
ChIP SK-N-SH_RA GSE69119.MAML3.SK-N-SH_RA 284 bp overlap
MED1 6 datasets
ChIP hMSC-TERT4_D14 GSE104537.MED1.hMSC-TERT4_D14 175 bp overlap
ChIP hMSC-TERT4_D7 GSE104537.MED1.hMSC-TERT4_D7 198 bp overlap
ChIP hMSC-TERT4_adipocyte-D3 GSE113253.MED1.hMSC-TERT4_adipocyte-D3 199 bp overlap
ChIP hMSC-TERT4_adipocyte-D7 GSE113253.MED1.hMSC-TERT4_adipocyte-D7 175 bp overlap
ChIP hMSC-TERT4_osteoblast-D3 GSE113253.MED1.hMSC-TERT4_osteoblast-D3 210 bp overlap
ChIP hMSC-TERT4_osteoblast-D7 GSE113253.MED1.hMSC-TERT4_osteoblast-D7 234 bp overlap
MRTFB 1 dataset
ChIP A-673-clone-Asp114 GSE92738.MRTFB.A-673-clone-Asp114 280 bp overlap
MTA2 1 dataset
ChIP RH4 GSE155861.MTA2.RH4 284 bp overlap
MYBL2 1 dataset
ChIP A-673 GSE119971.MYBL2.A-673 284 bp overlap
MYCN 7 datasets
ChIP BE2C GSE80151.MYCN.BE2C 284 bp overlap
ChIP Kelly GSE94822.MYCN.Kelly 284 bp overlap
ChIP Kelly_sensitive GSE115249.MYCN.Kelly_sensitive 166 bp overlap
ChIP LA-N-5 GSE138295.MYCN.LA-N-5 261 bp overlap
ChIP NB-1643 GSE94782.MYCN.NB-1643 168 bp overlap
ChIP SK-N-BE2-C GSE80151.MYCN.SK-N-BE2-C 284 bp overlap
ChIP SK-N-BE2-C GSE94822.MYCN.SK-N-BE2-C 269 bp overlap
MYOD1 2 datasets
ChIP RH30_DMSO GSE85169.MYOD1.RH30_DMSO 200 bp overlap
ChIP RH4 GSE83726.MYOD1.RH4 210 bp overlap
MYOG 2 datasets
ChIP RH4 GSE83726.MYOG.RH4 274 bp overlap
ChIP RH4_DMSO-6H GSE116344.MYOG.RH4_DMSO-6H 234 bp overlap
NANOG 1 dataset
ChIP WA01_3IL ERP004238.NANOG.WA01_3IL 154 bp overlap
NEUROD1 4 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 223 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 182 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 241 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 174 bp overlap
NEUROG2 5 datasets
ChIP MRC-5_NFD_02DPT GSE75910.NEUROG2.MRC-5_NFD_02DPT 176 bp overlap
ChIP MRC-5_NFD_05DPT GSE75910.NEUROG2.MRC-5_NFD_05DPT 229 bp overlap
ChIP MRC-5_NFD_1DPT GSE75910.NEUROG2.MRC-5_NFD_1DPT 242 bp overlap
ChIP MRC-5_N_02DPT GSE75910.NEUROG2.MRC-5_N_02DPT 167 bp overlap
ChIP MRC-5_N_1DPT GSE75910.NEUROG2.MRC-5_N_1DPT 195 bp overlap
NFIC 2 datasets
ChIP SK-N-SH ENCFF965AKM 230 bp overlap
ChIP SK-N-SH ENCSR000BSV.NFIC.SK-N-SH 204 bp overlap
NKX2-1 1 dataset
ChIP NCI-H3122 GSE39998.NKX2-1.NCI-H3122 184 bp overlap
NKX2-3 1 dataset
Motif DE_12h DE_12h-NKX2-3_MA0672.2 8 bp overlap
NKX2-4 1 dataset
Motif DE_12h DE_12h-NKX2-4_MA2003.2 8 bp overlap
NKX2-8 1 dataset
Motif DE_12h DE_12h-NKX2-8_MA0673.2 8 bp overlap
Olig2 1 dataset
Motif DE_12h DE_12h-Olig2_MA1997.2 6 bp overlap
PBX3 1 dataset
ChIP SK-N-SH ENCFF876BMC 255 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 269 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 284 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 284 bp overlap
POLR2A 2 datasets
ChIP SK-N-MC ENCFF088IVG 218 bp overlap
ChIP SK-N-SH ENCFF683PFH 229 bp overlap
POU2F3 1 dataset
Motif DE_12h DE_12h-POU2F3_MA0627.3 9 bp overlap
POU5F1 2 datasets
Motif DE_12h DE_12h-POU5F1_MA1115.2 7 bp overlap
ChIP hESC_NAIVE GSE69646.POU5F1.hESC_NAIVE 284 bp overlap
Ptf1A 1 dataset
Motif DE_12h DE_12h-Ptf1A_MA1619.2 8 bp overlap
RAD21 7 datasets
ChIP HAP1 GSE126634.RAD21.HAP1 284 bp overlap
ChIP HAP1 GSE152721.RAD21.HAP1 284 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 284 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 271 bp overlap
ChIP HEK293_siE1A GSE130135.RAD21.HEK293_siE1A 283 bp overlap
ChIP SK-N-SH ENCFF747MAS 251 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 284 bp overlap
RARA 1 dataset
ChIP SK-N-SH GSE69119.RARA.SK-N-SH 231 bp overlap
RBBP4 2 datasets
ChIP RH5 GSE155861.RBBP4.RH5 284 bp overlap
ChIP SCMC GSE155861.RBBP4.SCMC 284 bp overlap
RBPJ 1 dataset
Motif DE_12h DE_12h-RBPJ_MA1116.2 6 bp overlap
RCOR1 2 datasets
ChIP SK-N-SH ENCFF518EXB 214 bp overlap
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 284 bp overlap
RELA 2 datasets
ChIP SGBS_TNF GSE64233.RELA.SGBS_TNF 149 bp overlap
ChIP aortic-endothelial-cell_IL1B_D4 GSE139377.RELA.aortic-endothelial-cell_IL1B_D4 184 bp overlap
SMARCA2 1 dataset
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCA2.SK-N-MC_shEWSFLI1 263 bp overlap
SMARCA4 3 datasets
ChIP NGP GSE134626.SMARCA4.NGP 284 bp overlap
ChIP NGP_ARID1A-het GSE134626.SMARCA4.NGP_ARID1A-het 284 bp overlap
ChIP NGP_ARID1A-mut1 GSE134626.SMARCA4.NGP_ARID1A-mut1 251 bp overlap
SMARCC1 3 datasets
ChIP SK-N-MC GSE94275.SMARCC1.SK-N-MC 284 bp overlap
ChIP SK-N-MC_shEWSFLI1 GSE94275.SMARCC1.SK-N-MC_shEWSFLI1 272 bp overlap
ChIP SK-N-MC_shGFP GSE94275.SMARCC1.SK-N-MC_shGFP 241 bp overlap
SNAI2 2 datasets
ChIP SK-N-SH ENCFF449PID 199 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR106GVM.SNAI2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 135 bp overlap
SOX8 1 dataset
ChIP RH4 GSE116344.SOX8.RH4 274 bp overlap
SPIB 1 dataset
Motif DE_12h DE_12h-SPIB_MA0081.3 13 bp overlap
STAT3 4 datasets
ChIP HCC1187 GSE152203.STAT3.HCC1187 225 bp overlap
ChIP MCF-10A ENCSR000DOQ.STAT3.MCF-10A 148 bp overlap
ChIP MCF10A-Er-Src_TAM GSE115597.STAT3.MCF10A-Er-Src_TAM 194 bp overlap
ChIP MDA-MB-157_EtOH GSE85579.STAT3.MDA-MB-157_EtOH 284 bp overlap
Smad4 1 dataset
Motif DE_12h DE_12h-Smad4_MA1153.2 7 bp overlap
Stat5b 1 dataset
Motif DE_12h DE_12h-Stat5b_MA1625.2 9 bp overlap
TBX2 2 datasets
ChIP Kelly GSE94822.TBX2.Kelly 284 bp overlap
ChIP SK-N-BE2-C GSE94822.TBX2.SK-N-BE2-C 284 bp overlap
TCF12 1 dataset
ChIP SK-N-SH ENCFF147AHB 243 bp overlap
TCF4 2 datasets
ChIP SH-SY5Y GSE96915.TCF4.SH-SY5Y 190 bp overlap
ChIP SK-N-SH ENCFF270OWF 247 bp overlap
TEAD1 1 dataset
ChIP adipocyte GSE140782.TEAD1.adipocyte 250 bp overlap
TEAD4 4 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 284 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 284 bp overlap
ChIP SK-N-SH ENCFF754TJT 240 bp overlap
ChIP SK-N-SH ENCSR000BUQ.TEAD4.SK-N-SH 168 bp overlap
TFAP2A 1 dataset
ChIP WA09 GSE105081.TFAP2A.WA09 265 bp overlap
TFAP2B 1 dataset
ChIP SK-N-SH ENCFF869XXQ 284 bp overlap
TFAP2C 2 datasets
ChIP UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc GSE101074.TFAP2C.UCLA1-hESCs_TFAP2C--_1d_TFAP2C_Induc 191 bp overlap
ChIP WA09 GSE105081.TFAP2C.WA09 163 bp overlap
TFAP4 1 dataset
Motif DE_12h DE_12h-TFAP4_MA0691.1 10 bp overlap
TOX2 2 datasets
ChIP SK-N-SH ENCFF415OYE 175 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR226NRS.TOX2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 218 bp overlap
TSHZ2 2 datasets
ChIP SK-N-SH ENCFF182EBB 236 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR282NLQ.TSHZ2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 284 bp overlap
TWIST1 4 datasets
ChIP BE2C GSE80151.TWIST1.BE2C 284 bp overlap
ChIP SHEP-21N GSE80151.TWIST1.SHEP-21N 284 bp overlap
ChIP SHEP-21N_DOX_0H GSE80151.TWIST1.SHEP-21N_DOX_0H 284 bp overlap
ChIP SK-N-BE2-C GSE80151.TWIST1.SK-N-BE2-C 284 bp overlap
Tcf12 1 dataset
Motif DE_12h DE_12h-Tcf12_MA0521.3 6 bp overlap
Twist2 1 dataset
Motif DE_12h DE_12h-Twist2_MA0633.3 6 bp overlap
YY1 2 datasets
ChIP RH4_DMSO-6H GSE116344.YY1.RH4_DMSO-6H 200 bp overlap
ChIP SK-N-SH ENCSR000BLZ.YY1.SK-N-SH 155 bp overlap
ZC3H10 1 dataset
ChIP SK-N-SH ENCFF465WAR 111 bp overlap
ZFP3 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR581GUY.ZFP3.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 200 bp overlap
ZNF317 1 dataset
Motif DE_12h DE_12h-ZNF317_MA1593.2 8 bp overlap
ZNF70 1 dataset
ChIP SK-N-SH ENCFF833ACX 212 bp overlap
ZNF768 1 dataset
Motif DE_12h DE_12h-ZNF768_MA1731.2 9 bp overlap
ZSCAN4 1 dataset
ChIP HEK293 ENCFF381BKT 106 bp overlap
Zfx 1 dataset
Motif DE_12h DE_12h-Zfx_MA0146.3 10 bp overlap