chr4 : 94,577,254 94,577,434
180 bp 66 TFs 0 linked genes
This 180 bp open chromatin element has no linked target genes and is bound by 66 transcription factors.
Linked Genes
No linked genes
Chromatin Accessibility

Genome Browser

Genomic view centred on this element. Tracks include ATAC-seq accessibility, RNA-seq expression, TF binding peaks, and element-to-gene loop arcs across the ESC → DE time course.

View limited to ±500 kb around this element.
For the full data, please see the UCSC track linked below.
chr4:94,572,254 – 94,582,434
This element Other elements ATAC-seq RNA-seq

Transcription factors with ChIP-seq peak overlap or TOBIAS motif footprint evidence at this element.

TF Binding
66 transcription factors
Source
Cell type
AR 1 dataset
ChIP LNCaP_sgCHD1 GSE117430.AR.LNCaP_sgCHD1 82 bp overlap
ARID1A 1 dataset
ChIP HAP1 GSE108387.ARID1A.HAP1 180 bp overlap
ATRX 1 dataset
ChIP metastatic-neuroblastoma_SKNFI GSE100148.ATRX.metastatic-neuroblastoma_SKNFI 151 bp overlap
BNC2 2 datasets
ChIP SK-N-SH ENCFF174EMC 180 bp overlap
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR754GYI.BNC2.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 102 bp overlap
BRD4 3 datasets
ChIP cortical-interneuron_KCl-pos GSE117508.BRD4.cortical-interneuron_KCl-pos 153 bp overlap
ChIP cortical-interneuron_R133C_KCl-neg_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-neg_JQ1-neg 180 bp overlap
ChIP cortical-interneuron_R133C_KCl-pos_JQ1-neg GSE117508.BRD4.cortical-interneuron_R133C_KCl-pos_JQ1-neg 147 bp overlap
CDK8 3 datasets
ChIP leiomyoma_PT886 GSE128230.CDK8.leiomyoma_PT886 148 bp overlap
ChIP myometrium_PT1063 GSE128230.CDK8.myometrium_PT1063 61 bp overlap
ChIP myometrium_PT967 GSE128230.CDK8.myometrium_PT967 74 bp overlap
CHD2 1 dataset
ChIP SK-N-SH ENCSR274SLQ.CHD2.SK-N-SH 77 bp overlap
CHD7 1 dataset
ChIP hiPSC_derived_lt-NES GSE108506.CHD7.hiPSC_derived_lt-NES 180 bp overlap
CREB1 1 dataset
ChIP LNCaP-abl_SHFOXA1 GSE63034.CREB1.LNCaP-abl_SHFOXA1 180 bp overlap
CREB5 1 dataset
ChIP SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour ENCSR758GOA.CREB5.SK-N-SH_all-trans-retinoic-acid_6-uM_48-hour 104 bp overlap
CRX 1 dataset
ChIP retina_Hu3 GSE137311.CRX.retina_Hu3 180 bp overlap
CSDC2 1 dataset
ChIP SK-N-SH ENCFF868MXA 180 bp overlap
CTCF 3 datasets
ChIP HAP1_clone21_CTCF-CRISPR GSE152721.CTCF.HAP1_clone21_CTCF-CRISPR 180 bp overlap
ChIP anterior-temporal-cortex_fetal GSE116825.CTCF.anterior-temporal-cortex_fetal 166 bp overlap
ChIP retina_Hu6 GSE137311.CTCF.retina_Hu6 180 bp overlap
E2F1 1 dataset
ChIP LNCaP_shRB GSE94958.E2F1.LNCaP_shRB 180 bp overlap
EP300 2 datasets
ChIP SK-N-SH ENCSR000EHV.EP300.SK-N-SH 117 bp overlap
ChIP WA01 ENCSR000BKK.EP300.WA01 128 bp overlap
FEZF1 1 dataset
ChIP HEK293 GSE76494.FEZF1.HEK293 157 bp overlap
FLI1 1 dataset
ChIP A-673_1_KRAB_GFP GSE106914.FLI1.A-673_1_KRAB_GFP 108 bp overlap
GATA2 2 datasets
ChIP LNCaP GSE38391.GATA2.LNCaP 109 bp overlap
ChIP LNCaP GSE52725.GATA2.LNCaP 109 bp overlap
HAND2 1 dataset
ChIP CLB-Ga GSE90683.HAND2.CLB-Ga 135 bp overlap
HOXB13 3 datasets
ChIP prostate_P13_T GSE130408.HOXB13.prostate_P13_T 140 bp overlap
ChIP prostate_P19 GSE130408.HOXB13.prostate_P19 158 bp overlap
ChIP prostate_P29_T GSE130408.HOXB13.prostate_P29_T 117 bp overlap
ISL1 2 datasets
ChIP SK-N-BE2-C GSE94822.ISL1.SK-N-BE2-C 77 bp overlap
ChIP SK-N-SH ENCFF285GEQ 85 bp overlap
KDM1A 1 dataset
ChIP SH-SY5Y_B0_SHLSD18A GSE58258.KDM1A.SH-SY5Y_B0_SHLSD18A 145 bp overlap
KLF4 1 dataset
ChIP HAP1 GSE130417.KLF4.HAP1 97 bp overlap
LHX2 1 dataset
ChIP retina_pigment GSE60024.LHX2.retina_pigment 149 bp overlap
MAFB 1 dataset
ChIP islet ERP004003.MAFB.islet 157 bp overlap
MED1 1 dataset
ChIP G296S_4 GSE85628.MED1.G296S_4 139 bp overlap
MED12 8 datasets
ChIP leiomyoma_PT1063 GSE128230.MED12.leiomyoma_PT1063 69 bp overlap
ChIP leiomyoma_PT848 GSE128230.MED12.leiomyoma_PT848 92 bp overlap
ChIP leiomyoma_PT886 GSE128230.MED12.leiomyoma_PT886 151 bp overlap
ChIP leiomyoma_PT967 GSE128230.MED12.leiomyoma_PT967 142 bp overlap
ChIP myometrium_PT1063 GSE128230.MED12.myometrium_PT1063 57 bp overlap
ChIP myometrium_PT848 GSE128230.MED12.myometrium_PT848 101 bp overlap
ChIP myometrium_PT886 GSE128230.MED12.myometrium_PT886 67 bp overlap
ChIP myometrium_PT916 GSE128230.MED12.myometrium_PT916 152 bp overlap
MXI1 2 datasets
ChIP SK-N-SH ENCFF746HVJ 180 bp overlap
ChIP SK-N-SH ENCSR000EIA.MXI1.SK-N-SH 153 bp overlap
MYOD1 1 dataset
ChIP RD_shSNAI2 GSE137168.MYOD1.RD_shSNAI2 171 bp overlap
NANOG 1 dataset
ChIP WA01 ENCSR000BMT.NANOG.WA01 153 bp overlap
NEUROD1 5 datasets
ChIP D283-Med GSE92582.NEUROD1.D283-Med 111 bp overlap
ChIP D283-Med_shNEUROD1-1579 GSE92582.NEUROD1.D283-Med_shNEUROD1-1579 136 bp overlap
ChIP D341-Med_shGFP GSE92582.NEUROD1.D341-Med_shGFP 180 bp overlap
ChIP D341-Med_shNEUROD1-1154 GSE92582.NEUROD1.D341-Med_shNEUROD1-1154 137 bp overlap
ChIP D341-Med_shNEUROD1-1579 GSE92582.NEUROD1.D341-Med_shNEUROD1-1579 180 bp overlap
NFKB1 1 dataset
ChIP L1236 GSE63736.NFKB1.L1236 114 bp overlap
NKX2-1 1 dataset
ChIP H9_derived-cIN GSE99937.NKX2-1.H9_derived-cIN 180 bp overlap
NKX3-1 1 dataset
ChIP islet ERP004003.NKX3-1.islet 180 bp overlap
NOTCH1 1 dataset
ChIP GSC8-11_dasatinib GSE74557.NOTCH1.GSC8-11_dasatinib 149 bp overlap
NUTM1 1 dataset
ChIP NUT_DMSO GSE133122.NUTM1.NUT_DMSO 180 bp overlap
OSR2 3 datasets
ChIP HEK293 ENCFF875BDB 180 bp overlap
ChIP HEK293 ENCSR324LTM.OSR2.HEK293 180 bp overlap
ChIP HEK293 GSE76494.OSR2.HEK293 180 bp overlap
OTX2 3 datasets
ChIP WTC11 ENCFF634NAO 148 bp overlap
ChIP retina_Hu7 GSE137311.OTX2.retina_Hu7 180 bp overlap
ChIP retina_pigment GSE60024.OTX2.retina_pigment 147 bp overlap
PGR 1 dataset
ChIP myometrium_NP1 GSE137550.PGR.myometrium_NP1 180 bp overlap
PHOX2B 2 datasets
ChIP CLB-Ga GSE90683.PHOX2B.CLB-Ga 180 bp overlap
ChIP SK-N-BE2-C GSE94822.PHOX2B.SK-N-BE2-C 92 bp overlap
PITX3 1 dataset
ChIP SH-SY5Y GSE93275.PITX3.SH-SY5Y 180 bp overlap
POU4F2 1 dataset
ChIP HNPC_DIF GSE74814.POU4F2.HNPC_DIF 180 bp overlap
POU5F1 1 dataset
ChIP hESC_PRIMED GSE69646.POU5F1.hESC_PRIMED 87 bp overlap
PRDM10 1 dataset
ChIP HEK293 ENCFF145WQQ 180 bp overlap
PRDM6 1 dataset
ChIP HEK293 ENCSR892QHR.PRDM6.HEK293 180 bp overlap
RAD21 5 datasets
ChIP HAP1 GSE152721.RAD21.HAP1 180 bp overlap
ChIP HAP1 GSE126634.RAD21.HAP1 180 bp overlap
ChIP HAP1_CTCF GSE126634.RAD21.HAP1_CTCF 180 bp overlap
ChIP HAP1_clone25 GSE152721.RAD21.HAP1_clone25 180 bp overlap
ChIP SK-N-SH ENCSR000EHX.RAD21.SK-N-SH 120 bp overlap
RBPJ 3 datasets
ChIP GIC GSE79734.RBPJ.GIC 180 bp overlap
ChIP GSC8-11_12d-das GSE74557.RBPJ.GSC8-11_12d-das 180 bp overlap
ChIP GSC8-11_dasatinib GSE74557.RBPJ.GSC8-11_dasatinib 180 bp overlap
RCOR1 1 dataset
ChIP SK-N-SH ENCSR009TKN.RCOR1.SK-N-SH 144 bp overlap
RELA 2 datasets
ChIP HAEC GSE89970.RELA.HAEC 146 bp overlap
ChIP HAEC_TNFa_4h GSE89970.RELA.HAEC_TNFa_4h 173 bp overlap
REST 1 dataset
ChIP WA01 ENCSR000BHM.REST.WA01 109 bp overlap
RFX1 4 datasets
ChIP K-562 ENCSR968GIB.RFX1.K-562 180 bp overlap
ChIP K-562 ENCSR041AXL.RFX1.K-562 180 bp overlap
ChIP K562 ENCFF421AVO 147 bp overlap
ChIP K562 ENCFF809XVG 180 bp overlap
SMARCA2 3 datasets
ChIP NPC_K755R-siAP GSE122631.SMARCA2.NPC_K755R-siAP 180 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA2.NPC_K755R-siCT 180 bp overlap
ChIP NPC_R1159Q_AM GSE122631.SMARCA2.NPC_R1159Q_AM 175 bp overlap
SMARCA4 7 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCA4.BIN-67_lentivirus-SMARCA4 106 bp overlap
ChIP BT-16_Dox GSE71504.SMARCA4.BT-16_Dox 180 bp overlap
ChIP NPC_K755R-siAP GSE122631.SMARCA4.NPC_K755R-siAP 180 bp overlap
ChIP NPC_K755R-siCT GSE122631.SMARCA4.NPC_K755R-siCT 180 bp overlap
ChIP NPC_siCT GSE122631.SMARCA4.NPC_siCT 180 bp overlap
ChIP NPC_siSOX GSE122631.SMARCA4.NPC_siSOX 180 bp overlap
ChIP NSC GSE125033.SMARCA4.NSC 180 bp overlap
SMARCC1 2 datasets
ChIP BIN-67_lentivirus-SMARCA4 GSE117734.SMARCC1.BIN-67_lentivirus-SMARCA4 118 bp overlap
ChIP BT-16_Dox GSE71504.SMARCC1.BT-16_Dox 119 bp overlap
SOX2 3 datasets
ChIP HNSC GSE69479.SOX2.HNSC 180 bp overlap
ChIP LK2_GFP GSE137459.SOX2.LK2_GFP 180 bp overlap
ChIP RENVM GSE49404.SOX2.RENVM 177 bp overlap
SP1 1 dataset
ChIP WA01 ENCSR000BIR.SP1.WA01 156 bp overlap
SUPT5H 1 dataset
ChIP HCT-116_pThr806 GSE138548.SUPT5H.HCT-116_pThr806 98 bp overlap
T 1 dataset
ChIP H9_MESODERM GSE60606.T.H9_MESODERM 142 bp overlap
TAF1 1 dataset
ChIP WA01 ENCSR000BHO.TAF1.WA01 117 bp overlap
TEAD4 2 datasets
ChIP BE2C GSE84389.TEAD4.BE2C 151 bp overlap
ChIP SK-N-BE2 GSE84389.TEAD4.SK-N-BE2 151 bp overlap
ZNF341 3 datasets
ChIP HEK293 ENCFF944VMC 180 bp overlap
ChIP HEK293 ENCSR185FOY.ZNF341.HEK293 180 bp overlap
ChIP HEK293 GSE76494.ZNF341.HEK293 165 bp overlap
ZNF362 2 datasets
ChIP HEK293 ENCFF436CGE 104 bp overlap
ChIP HEK293 ENCSR715QNO.ZNF362.HEK293 107 bp overlap
ZSCAN16 1 dataset
ChIP HEK293 GSE76494.ZSCAN16.HEK293 115 bp overlap